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Lec. 1
1
Stereochemistry
Is the branch of chemistry concerned with the three dimensional
aspects of molecules.
Isomers: different compounds that have the have the same number
and kinds of atoms, but they are different in connections.
Lec. 1
2
Lec. 1
3
Enantiomers: are stereoisomers that are mirror images but cannot be
superimposed.
Lec. 1
4
Enantiomers have identical physical properties but different in
biological activity. One enantiomer of a drug can be considered as a
cure for a disease while another could be very toxic.
D-amino acids are biologically not active, while L-amino acids are active.
D-sugars are biologically active, while L- sugars are not.
Chiral carbon atom
Tetrahedral carbon atom connected to four different groups is called
chiral carbon, it has asymmetrical carbon.
Example
Lec. 1
5
(a) (b)
D-alanine called a chiral molecule. It has mirror image and they are
superimposed.
Number of isomers (I)=2n
I=number of isomers
n= number of chiral atoms
In alanine n=1,
I=21
=2
Lec. 1
6
CH2OH-CHOH-CHOH-CHOH-CHO
n=2
I=22
=4
CH2OH-CHOH-CHOH- CHO
n= 2
I=22
=4
Lec. 1
7
Example
Give me all isomer of ribose C5H10O5
Optical activity
All biological compounds such as sugars, amino acids and drugs with
chiral carbon atoms can rotate the polarized light to the right or to the
left.
Lec. 1
8
Mesocompound: A molecule that contains chiral centers but optically
inactive. It contains internal plane of symmetry:
Lec. 1
9
Smiley face has an internal mirror plane of symmetry
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10
Example for cyclic enantiomers and diastereomers.
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11
Stereoisomers of carbon compounds
Configuration: The arrangement in space of the atoms of a molecule.
Chiral carbon atom: a carbon atom bonded to for different atom or
groups.
Optical activity: all chiral molecules have the ability to rotate plane-
polarized light.
Polarized light: light in which all rays vibrate in a single plane.
Lec. 1
12
Any substance that will rotate plane polarized light is said to be
optically active.
A compound that rotates plane-polarized light to the right is called
dextrorotatory. If the rotation is to the left, the compound is called
levorotatory.These compound are called optical isomers.
A mixture of equal amounts of the two enantiomers is called a racemic
mixture. Such a mixture is optically inactive.
Diastereomers: Stereoisomers that are optically active but are not
mirror images.
Lec. 1
13
Meso stereoisomers:
A molecule that contains chiral centers but is optically inactive.

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Stereochemistry

  • 1. Lec. 1 1 Stereochemistry Is the branch of chemistry concerned with the three dimensional aspects of molecules. Isomers: different compounds that have the have the same number and kinds of atoms, but they are different in connections.
  • 3. Lec. 1 3 Enantiomers: are stereoisomers that are mirror images but cannot be superimposed.
  • 4. Lec. 1 4 Enantiomers have identical physical properties but different in biological activity. One enantiomer of a drug can be considered as a cure for a disease while another could be very toxic. D-amino acids are biologically not active, while L-amino acids are active. D-sugars are biologically active, while L- sugars are not. Chiral carbon atom Tetrahedral carbon atom connected to four different groups is called chiral carbon, it has asymmetrical carbon. Example
  • 5. Lec. 1 5 (a) (b) D-alanine called a chiral molecule. It has mirror image and they are superimposed. Number of isomers (I)=2n I=number of isomers n= number of chiral atoms In alanine n=1, I=21 =2
  • 7. Lec. 1 7 Example Give me all isomer of ribose C5H10O5 Optical activity All biological compounds such as sugars, amino acids and drugs with chiral carbon atoms can rotate the polarized light to the right or to the left.
  • 8. Lec. 1 8 Mesocompound: A molecule that contains chiral centers but optically inactive. It contains internal plane of symmetry:
  • 9. Lec. 1 9 Smiley face has an internal mirror plane of symmetry
  • 10. Lec. 1 10 Example for cyclic enantiomers and diastereomers.
  • 11. Lec. 1 11 Stereoisomers of carbon compounds Configuration: The arrangement in space of the atoms of a molecule. Chiral carbon atom: a carbon atom bonded to for different atom or groups. Optical activity: all chiral molecules have the ability to rotate plane- polarized light. Polarized light: light in which all rays vibrate in a single plane.
  • 12. Lec. 1 12 Any substance that will rotate plane polarized light is said to be optically active. A compound that rotates plane-polarized light to the right is called dextrorotatory. If the rotation is to the left, the compound is called levorotatory.These compound are called optical isomers. A mixture of equal amounts of the two enantiomers is called a racemic mixture. Such a mixture is optically inactive. Diastereomers: Stereoisomers that are optically active but are not mirror images.
  • 13. Lec. 1 13 Meso stereoisomers: A molecule that contains chiral centers but is optically inactive.