Abstract
Brassica species are of great importance for human food and animal feed supply. Brassica napus occupies the second position among the oilseed crops behind soybean. Brassica oleracea includes numerous species of vegetables. Salinity is one of the abiotic stresses that adversely affect the productivity of these crops globally. The objectives were: (1) to study the effect of salinity on two stages of plant growth, namely seed germination and the vegetative stage, and to map QTL (Quantitative Trait Loci) for salt tolerance in both growth stages in doubled-haploid (DH) mapping populations of B. napus and B. oleracea, (2) to examine the variation in leaf gulcosinolates content and the impact of salinity on GSL. In all populations, several QTL were mapped under control and salt stress for, seed germination traits, vegetative growth and gulcosinolates content. A number of QTL hotspots were mapped on different linkage groups (LGs). No consistency was found between for seed germination and the QTL for vegetative growth.
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Genetic Mapping of QTL controlling salt tolerance and glucosinolates in Brassica napus and Brassica oleracea
1. Genetic mapping of QTL controlling salt
tolerance and glucosinolates in Brassica
napus and Brassica oleracea
Botany department, Faculty of Science, Fayoum University
Date 11.12.2017
PhD project in University of Goettingen, Germany
Dr. Yasser Moursi
2017/2018
2. Genetic mapping of QTL controlling salt
tolerance and glucosinolates in Brassica
napus and Brassica oleracea
2
Presented by
Dr. Yasser Moursi
Botany department, Faculty of Science, Fayoum University
Assiut University, 11.12.2017
12. Objectives:
Mapping QTL for salt tolerance at seed
germination
Mapping QTL for salt tolerance at the
young plant stage
Mapping QTL for glucosinolates under
salt stress
12
13. Mapping QTL for salt tolerance at
seed germination
Part I
13
14. Three DH
populations
B. napus
Alesi x H30
Mansholts x
Samourai
B. oleracea
TO1000DH3
x Early Big
Population Source Map
Alesi x H30 KWS Sebastian Miersch
Mansholts x Samourai Plant breeding
division(our institute)
Dr. Ecke
TO1000 DH3 x Early
Big (Bo1TBDH) Warwick University, UK
Iniguez-Luy et al.
(2009)
Plant materials
14
15. Methods
5 ml tap water
Germination conditions: 20°C /darkness for 8 days
Germination percentage (G%) = 𝐆% =
𝐧
𝐍
𝐱 𝟏𝟎𝟎
Germination pace (GP) = GP
𝐍
𝚺 (𝐧 𝐱 𝐠)
Salt tolerance index (STI) =
𝐏𝐞𝐫𝐟𝐨𝐫𝐦𝐚𝐧𝐜𝐞 𝐮𝐧𝐝𝐞𝐫 𝐬𝐚𝐥𝐭
𝐏𝐞𝐫𝐟𝐨𝐫𝐦𝐚𝐧𝐜𝐞 𝐮𝐧𝐝𝐞𝐫 𝐜𝐨𝐧𝐭𝐫𝐨𝐥
x 𝟏𝟎𝟎
Estimated traits:
15
DH Line A: GP =
𝟏𝟎
𝟒 𝐱 𝟏 + 𝟑 𝐱 𝟐 +(𝟑 𝐱 𝟑)
= 0.52
DH Line 𝐁: GP =
𝟏𝟎
𝟐 𝐱 𝟏 + 𝟑 𝐱 𝟐 + 𝟑 𝐱 𝟑 + 𝟐 𝐱 𝟒
= 0.37
18. 18
G%GP
0
20
40
60
80
100
0 0.15 0.3 0.45 0.6
NumberofDHlines
c) Control M
S
0
20
40
60
80
100
120
140
0 20 40 60 80 100
NumberofDHlines
a) Control
0
20
40
60
80
100
120
140
0 20 40 60 80 100
NumberofDHlines
b) Salt
S
M
0
20
40
60
80
100
0 0.1 0.2 0.3 0.4 0.5 0.6
NumberofDHlines
SM
d) Salt
M
S
Frequency distribution of germination parameters under
control under salt stress in B. napus mapping population
Mansholts × Samourai
21. Conclusion I
Salinity stress reduced the seed germination
parameters significantly.
The effect of salinity on GP was higher than
the effect on G%.
Adaptive (stress specific) QTL and constitutive
(stress nonspecific) QTL were mapped in all
populations.
21
22. Mapping QTL for salt tolerance at
the young plant growth stage
Part II
22
24. Methods
Brassica napus
Mansholts x Samourai
Brassica oleracea
Bo1TBDH
140 DH lines (2 parental lines + 138 DH lines)
10 greenhouse tables (5 for control and 5 for salt)
5 pots per DH line; 2 plants per pot
Salt treatment was 200 mM NaCl 100 mM NaCl
The experiment has been terminated 35 das
The salt stress began 21 days after sowing (das)
24
32. 32
Traits variation under control and salt stress in
B. oleracea
Traits Control Salt
FW(g) 4.1 2.8
DW(g) 0.4 0.3
RWC 89.7 87.2
SPAD 52.2 55.1
Na+ mg/g DM 2.7 28.2
K+ mg/g DM 67.9 44.6
Na+/K+ 0.04 0.6
36. Conclusion II
The effect of salinity on the traits in both populations
was similar except the K+ content that increased in B.
napus and decreased in B. oleracea.
Hotspot QTL regions were identified in both
populations.
Adaptive QTL and Constitutive QTL were mapped in
both populations.
NO common QTL were mapped for both germination
and vegetative growth traits.
36
38. Materials and methods
38
One pot was harvested 34 das.
Freezing in liquid N2
Lyophilization (96 h)
Grinding in a shaker with 3.4 mm metal balls
Extraction by Methanol and measurement by
high pressure liquid chromatography (HPLC)
Materials and methods
39. Names and classes of glucosinolates components that were
identified in both populations
Common name Abbreviation Source Group
Glucoiberin IBE Methionine Aliphatic
Progoitrin PRO Methionine Aliphatic
Sinigrin SIN Methionine Aliphatic
Gluconapin GNA Methionine Aliphatic
Glucoraphanin RAA Methionine Aliphatic
Glucoraphenin RAE Methionine Aliphatic
Glucobrassicanapin GBN Methionine Aliphatic
Napoleiferin GNL Methionine Aliphatic
Glucoalyssin ALY Methionine Aliphatic
Glucobrassicin GBC Tryptophan Indolic
4-Hydroxyglucobrassicin 4OH Tryptophan Indolic
Gluconasturtiin NAS Tryptophan Indolic
4-Methoxyglucobrassicin 4ME Tryptophan Indolic
Neoglucobrassicin NEO
Tyrosine,
Phenylalanine
Aromatic
39
40. 7.6 8.2
6.7
4.2 4.2
2.7
1.8
1.6
2.6
2.7 2.0
1.0
0.2 0.1 0.2
0.7
0.2
0.4
0
5
10
Control Salt Control Salt Control Salt
Mansholts DH population Samourai
µMol/gDM Aliphatic Indolic Aromatic
Glucosinolates variations in the parents and the B. napus DH
population ''Mansholts × Samourai'' 40
43. 8.9
4.0
2.6 1.8 1
0
1.2
1.5
2.8
1.4 3.1
0
1.3
1.3 1.6
0.9
0.5
00
2
4
6
8
10
12
Control Salt Control Salt Control Salt
TO1000DH3 DH population Early Big
µMOL/gDM Aliphatic Indolic Aromatic
Glucosinolates variations in the parents and the B.
oleracea DH population Bo1TBDH 43
46. General conclusion:
The effect of salinity on G% was lower than the
effect on GP.
Adaptive QTL and constitutive QTL were
mapped in the three tested populations.
In B. napus population there was an increase in
the K+ content but not in B. oleracea
population.
Both adaptive QTL and constitutive QTL were
found in both populations.
46
47. NO consistency was found between QTL for
SEED GERMINATION and QTL for
GROWTH TRAITS
The salt stress reduced the GSL content in both
populations.
An increases in glucobrassicin (GBC) and
glucoraphanin (RAA) has been observed in B.
napus but not in B. oleracea.
In B. napus The QTL for LEAF GSL co-localize
with QTL for SEED GSL that were mapped
previously
47
54. Dormancy
ABI3, FUS3 and LEC2 induce specific seed
maturation genes.
Primary dormancy is established during seed
development, specifically at a later stage of seed
development to suppress vivipary on the mother plant
54
55. Types of dormancy:
Physiological dormancy (PD), morphological
dormancy (MD), morphophysiological dormancy
(MPD), physical dormancy (PY) and
combinational dormancy (PY + PD).
Dormancy release:
GAs
Dark, low temperature, smoking
55
56. Correlation between G% and GP in Brassica napus (Alesi x H30)
under salt stress
95
100100
0
20
40
60
80
100
0 0.1 0.2 0.3 0.4
Germinationprecentage(G%)
Germination pace
57. 57
Treat
ment
Trait Name of QTL LG LOD
Position
(cM)
interval Flanking Markers
Additiv
e Effect
Phenotypic
Variation
explained
(%)
C
GP GP-1C A9 3.0 81 80-89 ra08600 -ra07944 -0.03 10.45
GP GP-2C C1
5.3 44 32-54 ra08390 -sN00983 -0.04 17.5
GP GP-3C C4b
2.6 11 0-22 MR155 -CB10335 0.03 8.79
S G% G%-1S C1 1.8 54 43-79 sN00983-ra03282 -10.70 6.41
G%-STI G%-STI-1 A3
1.8 51 50-54 ra00527-sN08841 -10.56 6.31
GP-STI
GP-STI-1
A9
2.0 81 80-89
ra08600-ra07944
4.54 7.27
GP-STI
GP-STI-2
A10
2.2 56 35-57
CB10021-ra12416
-4.66 7.59
Table III-10: QTL detected at under control treatment (C) and Salt treatment
(S) for germination traits in B. napus mapping population Alesi × H30. (QTL
significant with P = 0.05 are marked red)
58. 58
Table III-11: QTL detected under control treatment (C) and Salt treatment (S) for
germination traits in B. napus mapping population Mansholts × Samourai. (QTL
significant with P = 0.05 are marked bold)
Treat
ment
Trait
Name
of
QTL
LG LOD
Positi
on
(cM)
interval Flanking Markers
Additive
Effect
Phenotypi
c Variation
explained
C
G%
G%-
1C
C1 1.8 24 8-27 BRAS067 - W1D7.H1 1.88 6.12
G%
G%-
2C
C1 3.4 53 52-58 RP1119.E1 -F4E4060.1 -2.48 11.28
GP
GP-1C A9 1.8 14 13-16 MD41 - WG3F7.H1 0.02 6.06
S
G%
G%-
1S
C5 1.2 107 90-110 MR97B -MR97A -5.99 4.31
GP
GP-1S A8 1.8 77 68-78 RP299.E1 -OPQ9.1590 -0.02 6.27
GP-
STI
GP-
STI
A8 1.5 77 68-78 RP299.E1 -OPQ9.1590 -3.80 5.15
59. 59
Treatm
ent
Trait
Name
of QTL
LG LOD
Positio
n (cM)
Interval Flanking markers Additive Effect
Phenotypic
variation
explained (%)
C
G% G%-1C C2 2.6 63 53-72 pW189bX -fit081a -4.50 8.65
G% G%-2C C4 1.6 44 32-48 pW120cX -pW193bE 3.70 5.34
G% G%-3C C4 4.1 99 92-102 fit102 -BRMS034 6.93 15.66
GP GP-1C C4 2.7 40 32-47 pX105cE -pW120cX 0.02 9.08
GP GP-2C C4 3.3 102 98-108 BRMS034 -pW177bH 0.02 10.91
GP GP-3C C5 3.1 114 109-114 fit353 -pX119dH -0.02 10.45
S
G% G%-1S C1 2 90 84-95 pW225a -pW239bX 7.12 6.93
GP GP-1S C4 1.8 91 83-99 PMR181 -fit102 0.01 6.07
G%-
STI
G%-STI C3 2.0 28 21-31 Fit272- fit066 -13.02 8.44
Table III-12: QTL detected under control treatment (C) and salt treatment (S) for
germination traits in B. oleracea mapping population Bo1TBDH. (QTL significant
with P = 0.05 are marked red)
60. 60
AB/ab → cis or coupling phase
Ab/aB → trans or repulsion phase
62. 62
Murata et al. (2005)ITCs induced
stomatal closure by ROS, NO and Ca2+
signalling
glutathione monoethyl ester (GSHmee)
inhibits the stomatal closure induced by ITCs
63. 63
Moreno et al. (2008) Salinity stress of 40mM NaCl or foliar
spraying of (Meth. Try) increased the RAA and GBC
Robbins et al. (2005) selenium increased GSL especially
sulphoraphane
Santiago Pe´ rez-Balibrea et al. (2008)
Broccoli sprouts grown in the light were found to
have much higher concentrations of vitamin C by
(83%), glucosinolates (by 33%) and phenolic
compounds (by 61%) than those grown in the dark
87. 87
Species Stress Metabolic changes References
Brassica
rapa
jasmonate
(MeJA)
elicitation
glucose, sucrose and amino acids decreased (Liang et
al., 2006a),
or
Brassica
napus
Drought Amino acids increased under until cell
dehydration
(Good and
Zaplachinski
, 1994).
Brassica
oleracea
Salinity /
drought
sugar contents increased (Sasaki et
al., 1998).
Brassica Heavy metals Temporal increase of photosynthetic pigments,
amino acids, sugars
(Singh
and Sinha,
2005)
Arabidopsis Cadmium stress Toxic levels of ROS and severe chlorophyll loss (Zawoznik et
al., 2007).
Brassica
pekinensis
Cupper stress High levels of free amino acids (Xiong et al.,
2006)
Brassica Metal stress Increase of the low molecular weight organic
acids
(Seth et al.,
2008)
88. 88
Species Stress Metabolic changes References
Brassica napus Stress Reduction of ß-
carotene
(Gebczynski and
Lisiewska, 2006).
Brassica oleracea
(Broccoli)
Boiling and cooking Considerable
reduction of Ascorbic
acid
(Gebczynski and
Lisiewska, 2006;
Sikora et al., 2008),
Brassica oleracea
(Broccoli)
UV
7–13 ◦C
Increase of Ascorbic
acid
(Schonhof et al.,
2007).
Brassica oleracea
(Broccoli)
(6 h after)
Harvest
Reduction in protein,
organic acids- after
that increase in free
amino acids (GLU-
ASP)
(King and Morris,
1994;
Eason et al., 2007)
Brassica oleracea
(Broccoli)
7 d in high CO2 levels High levels of non-
protein amino acids
90. 90
Summary of the biosynthetic pathway and stress-induced metabolite production.
(+) Increased (−) Decreased
Menard et al .
(1999). B. oleracea
Downy mildew
Bodnaryk 1994.
B. napus/rapa/
Juncea
20-fold MeJA/JA
Aksouh (2001) /B.n /40 C/15
d
Shonhof (2007). B.o_ (RAA)
7-13 C ;7-13 mol.
(Song and Thornalley 2007) 4-
8 C/7d (SIN,PRO,GNA- IBE,
RAA,ALY).
Martinez-Sanchez et al.
(2006) Er.Sa. 4-33% loss open
air
60%-100% low O2 and High
CO2
** Shonhof 2007 Aliphatic
GSL increased storage/ 7_13
C
Low N and High S
Robbins et al. (2005)
Selenium/ Sulforaphane
91. 91
Salt-tolerant varieties Ren et al. 2005
Drought-tolerant
varieties
Araus et al. 2008
Ozone-tolerant
varieties
Frei et al. 2008
Heat-tolerant
varieties
Pinto et al. 2010
100. Zhixin Zhao et al. (2008)
Isothiocyanate lead to the inhibition of inward K+
channels in the guard cells to avoid water loss by
stomatal closure.
100
110. Traits variation under control and salt stress in B. napus
Traits Control Salt
FW(g) 4.6 2.7
DW(g) 0.6 0.4
RWC 87.2 84.6
SPAD1 38.1 42.3
SPAD2 38.9 44.9
Na+ mg/g DM 1.1 24.2
K+ mg/g DM 47.9 50.3
Na+/K+ 0.03 0.5
11
111. 11
Traits variation under control and salt stress in
B. oleracea
Traits Control Salt
FW(g) 4.1 2.8
DW(g) 0.4 0.3
RWC 89.7 87.2
SPAD 52.2 55.1
Na+ mg/g DM 2.7 28.2
K+ mg/g DM 67.9 44.6
Na+/K+ 0.04 0.6