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John B. Cole,1,*, K. F. Stock,2 J. Pryce,3 A. Bradley,4 N. Gengler,5
L. Andrews,6 and C. Egger-Danner7
1 Animal Improvement Programs Laboratory, Agricultural Research Service, USDA, Beltsville, MD
2 Vereinigte Informationssysteme Tierhaltung w.V. (vit), Verden, Germany
3 Department of Primary Industries, Victorian AgriBiosciences Centre, Bundoora / Victoria, Australia
4 Quality Milk Management Services Ltd, Westbury-sub-Mendip, Wells / Somerset, United Kingdom
5 University of Liège, Gembloux Agro-Bio Tech (GxABT), Animal Science, Gembloux, Belgium
6 Holstein UK, Rickmansworth / Herts, UK
7 ZuchtData EDV-Dienstleistungen GmbH, Vienna, Austria
john.cole@ars.usda.gov
An international overview of the
recording and use of functional
traits in dairy breeding and
management
2012 ADSA-AMPA-ASAS-CSAS-WSASAS Joint Annual Meeting, Phoenix, AZ, July 17, 2012 (2) Cole
Recording and use of functional traits
 Growing emphasis on functional traits
 No direct economic value, but
economically important because they
impact other traits
 Challenges with functional traits
 Inconsistent trait definitions
 Limited knowledge of international
activities
2012 ADSA-AMPA-ASAS-CSAS-WSASAS Joint Annual Meeting, Phoenix, AZ, July 17, 2012 (3) Cole
Trait
Relative emphasis on traits in index (%)
PD$
1971
MFP$
1976
CY$
1984
NM$
1994
NM$
2000
NM$
2003
NM$
2006
NM$
2010
Milk 52 27 –2 6 5 0 0 0
Fat 48 46 45 25 21 22 23 19
Protein … 27 53 43 36 33 23 16
PL … … … 20 14 11 17 22
SCS … … … –6 –9 –9 –9 –10
UDC … … … … 7 7 6 7
FLC … … … … 4 4 3 4
BDC … … … … –4 –3 –4 –6
DPR … … … … … 7 9 11
SCE … … … … … –2 … …
DCE … … … … … –2 … …
CA$ … … … … … … 6 5
Increased emphasis on functional traits
2012 ADSA-AMPA-ASAS-CSAS-WSASAS Joint Annual Meeting, Phoenix, AZ, July 17, 2012 (4) Cole
Functional traits working group (FTWG)
 ICAR working group (authors)
 7 members from 6 countries
 Standards and guidelines for functional
traits
 Recording schemes
 Evaluation procedures
 Breeding programs
2012 ADSA-AMPA-ASAS-CSAS-WSASAS Joint Annual Meeting, Phoenix, AZ, July 17, 2012 (5) Cole
ICAR FTWG survey – rationale
 International experiences with
functional traits (FT)
 Definitions in participating countries
 Strategies to improve functionality
 Exchange of information and experiences
 Goals for Working Group
 Needs of participants
 Priorities
2012 ADSA-AMPA-ASAS-CSAS-WSASAS Joint Annual Meeting, Phoenix, AZ, July 17, 2012 (6) Cole
ICAR FTWG survey – responses
 E-mail to all 52 ICAR member countries
 27 countries responded
 N = 2 countries without FT programs
 N = 25 countries with FT programs
 Species breakdown
 N = 1 only beef
 N = 12 only dairy
 N = 12 dairy and beef
2012 ADSA-AMPA-ASAS-CSAS-WSASAS Joint Annual Meeting, Phoenix, AZ, July 17, 2012 (7) Cole
ICAR FTWG survey – design
 20 questions in 4 sections
 Groups of functional traits
 Calving, fertility, longevity, & mobility
 Indirect health traits, e.g., SCC
 Direct health traits, e.g., veterinary
diagnoses
 Others traits, e.g., feed intake
2012 ADSA-AMPA-ASAS-CSAS-WSASAS Joint Annual Meeting, Phoenix, AZ, July 17, 2012 (8) Cole
I. General role of functional traits
Routine Evaluations
Trait group Traditional Genomic Developing
Calving 18 9 4
Fertility 20 9 6
Longevity 17 8 4
Feet & legs 17 8 7
Indirect health 20 9 4
Direct health 7 2 4
Other 5 4 0
2012 ADSA-AMPA-ASAS-CSAS-WSASAS Joint Annual Meeting, Phoenix, AZ, July 17, 2012 (9) Cole
What traits receive genetic evaluations?
2012 ADSA-AMPA-ASAS-CSAS-WSASAS Joint Annual Meeting, Phoenix, AZ, July 17, 2012 (10) Cole
What new traits are being studied?
2012 ADSA-AMPA-ASAS-CSAS-WSASAS Joint Annual Meeting, Phoenix, AZ, July 17, 2012 (11) Cole
Where do the data come from?
 >2/3 of countries use multiple sources
2012 ADSA-AMPA-ASAS-CSAS-WSASAS Joint Annual Meeting, Phoenix, AZ, July 17, 2012 (12) Cole
Who collects the data?
 2/3 of respondents use multiple groups
2012 ADSA-AMPA-ASAS-CSAS-WSASAS Joint Annual Meeting, Phoenix, AZ, July 17, 2012 (13) Cole
How are the data recorded?
 >2/3 of respondents use multiple methods
2012 ADSA-AMPA-ASAS-CSAS-WSASAS Joint Annual Meeting, Phoenix, AZ, July 17, 2012 (14) Cole
What are the data used for?
2012 ADSA-AMPA-ASAS-CSAS-WSASAS Joint Annual Meeting, Phoenix, AZ, July 17, 2012 (15) Cole
Concerns of data providers
2012 ADSA-AMPA-ASAS-CSAS-WSASAS Joint Annual Meeting, Phoenix, AZ, July 17, 2012 (16) Cole
Survey conclusions
 Functional traits are important
 Lots of research underway
 24 countries planning health analyses
 People want to exchange knowledge
 Lots of interest in workshops
 Some interest in new guidelines
2012 ADSA-AMPA-ASAS-CSAS-WSASAS Joint Annual Meeting, Phoenix, AZ, July 17, 2012 (17) Cole
Current FTWG activities
 “Recording, Evaluation and Genetic
Improvement of Health Traits”
 Accepted by the ICAR General Assembly
38th ICAR Biennial Session
 Included in the 2012 ICAR Guidelines
 “Recording, Evaluation and Genetic
Improvement of Female Fertility”
 Under development
2012 ADSA-AMPA-ASAS-CSAS-WSASAS Joint Annual Meeting, Phoenix, AZ, July 17, 2012 (18) Cole
Thanks to our participants!
Argentina, Australia, Austria, Belgium, Canada,
Chile, Croatia, Czech Republic, Denmark,
Estonia, Finland, France, Germany, Greece,
Hungary, Ireland, Island of Jersey, Korea,
Lithuania, The
Netherlands, Norway,
Poland, Portugal,
Romania, Slovenia, South
Africa, United States,
Uzbekistan
2012 ADSA-AMPA-ASAS-CSAS-WSASAS Joint Annual Meeting, Phoenix, AZ, July 17, 2012 (19) Cole
It's not too late to respond!
 Submissions accepted through 30
September, 2012
 Download PDF from FTWG website
 http://www.icar.org/pages/working_groups
/wg_functional_traits.htm
 Complete form and return by e-mail
 icar@icar.org

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An international overview of the recording and use of functional traits in dairy breeding and management

  • 1. John B. Cole,1,*, K. F. Stock,2 J. Pryce,3 A. Bradley,4 N. Gengler,5 L. Andrews,6 and C. Egger-Danner7 1 Animal Improvement Programs Laboratory, Agricultural Research Service, USDA, Beltsville, MD 2 Vereinigte Informationssysteme Tierhaltung w.V. (vit), Verden, Germany 3 Department of Primary Industries, Victorian AgriBiosciences Centre, Bundoora / Victoria, Australia 4 Quality Milk Management Services Ltd, Westbury-sub-Mendip, Wells / Somerset, United Kingdom 5 University of Liège, Gembloux Agro-Bio Tech (GxABT), Animal Science, Gembloux, Belgium 6 Holstein UK, Rickmansworth / Herts, UK 7 ZuchtData EDV-Dienstleistungen GmbH, Vienna, Austria john.cole@ars.usda.gov An international overview of the recording and use of functional traits in dairy breeding and management
  • 2. 2012 ADSA-AMPA-ASAS-CSAS-WSASAS Joint Annual Meeting, Phoenix, AZ, July 17, 2012 (2) Cole Recording and use of functional traits  Growing emphasis on functional traits  No direct economic value, but economically important because they impact other traits  Challenges with functional traits  Inconsistent trait definitions  Limited knowledge of international activities
  • 3. 2012 ADSA-AMPA-ASAS-CSAS-WSASAS Joint Annual Meeting, Phoenix, AZ, July 17, 2012 (3) Cole Trait Relative emphasis on traits in index (%) PD$ 1971 MFP$ 1976 CY$ 1984 NM$ 1994 NM$ 2000 NM$ 2003 NM$ 2006 NM$ 2010 Milk 52 27 –2 6 5 0 0 0 Fat 48 46 45 25 21 22 23 19 Protein … 27 53 43 36 33 23 16 PL … … … 20 14 11 17 22 SCS … … … –6 –9 –9 –9 –10 UDC … … … … 7 7 6 7 FLC … … … … 4 4 3 4 BDC … … … … –4 –3 –4 –6 DPR … … … … … 7 9 11 SCE … … … … … –2 … … DCE … … … … … –2 … … CA$ … … … … … … 6 5 Increased emphasis on functional traits
  • 4. 2012 ADSA-AMPA-ASAS-CSAS-WSASAS Joint Annual Meeting, Phoenix, AZ, July 17, 2012 (4) Cole Functional traits working group (FTWG)  ICAR working group (authors)  7 members from 6 countries  Standards and guidelines for functional traits  Recording schemes  Evaluation procedures  Breeding programs
  • 5. 2012 ADSA-AMPA-ASAS-CSAS-WSASAS Joint Annual Meeting, Phoenix, AZ, July 17, 2012 (5) Cole ICAR FTWG survey – rationale  International experiences with functional traits (FT)  Definitions in participating countries  Strategies to improve functionality  Exchange of information and experiences  Goals for Working Group  Needs of participants  Priorities
  • 6. 2012 ADSA-AMPA-ASAS-CSAS-WSASAS Joint Annual Meeting, Phoenix, AZ, July 17, 2012 (6) Cole ICAR FTWG survey – responses  E-mail to all 52 ICAR member countries  27 countries responded  N = 2 countries without FT programs  N = 25 countries with FT programs  Species breakdown  N = 1 only beef  N = 12 only dairy  N = 12 dairy and beef
  • 7. 2012 ADSA-AMPA-ASAS-CSAS-WSASAS Joint Annual Meeting, Phoenix, AZ, July 17, 2012 (7) Cole ICAR FTWG survey – design  20 questions in 4 sections  Groups of functional traits  Calving, fertility, longevity, & mobility  Indirect health traits, e.g., SCC  Direct health traits, e.g., veterinary diagnoses  Others traits, e.g., feed intake
  • 8. 2012 ADSA-AMPA-ASAS-CSAS-WSASAS Joint Annual Meeting, Phoenix, AZ, July 17, 2012 (8) Cole I. General role of functional traits Routine Evaluations Trait group Traditional Genomic Developing Calving 18 9 4 Fertility 20 9 6 Longevity 17 8 4 Feet & legs 17 8 7 Indirect health 20 9 4 Direct health 7 2 4 Other 5 4 0
  • 9. 2012 ADSA-AMPA-ASAS-CSAS-WSASAS Joint Annual Meeting, Phoenix, AZ, July 17, 2012 (9) Cole What traits receive genetic evaluations?
  • 10. 2012 ADSA-AMPA-ASAS-CSAS-WSASAS Joint Annual Meeting, Phoenix, AZ, July 17, 2012 (10) Cole What new traits are being studied?
  • 11. 2012 ADSA-AMPA-ASAS-CSAS-WSASAS Joint Annual Meeting, Phoenix, AZ, July 17, 2012 (11) Cole Where do the data come from?  >2/3 of countries use multiple sources
  • 12. 2012 ADSA-AMPA-ASAS-CSAS-WSASAS Joint Annual Meeting, Phoenix, AZ, July 17, 2012 (12) Cole Who collects the data?  2/3 of respondents use multiple groups
  • 13. 2012 ADSA-AMPA-ASAS-CSAS-WSASAS Joint Annual Meeting, Phoenix, AZ, July 17, 2012 (13) Cole How are the data recorded?  >2/3 of respondents use multiple methods
  • 14. 2012 ADSA-AMPA-ASAS-CSAS-WSASAS Joint Annual Meeting, Phoenix, AZ, July 17, 2012 (14) Cole What are the data used for?
  • 15. 2012 ADSA-AMPA-ASAS-CSAS-WSASAS Joint Annual Meeting, Phoenix, AZ, July 17, 2012 (15) Cole Concerns of data providers
  • 16. 2012 ADSA-AMPA-ASAS-CSAS-WSASAS Joint Annual Meeting, Phoenix, AZ, July 17, 2012 (16) Cole Survey conclusions  Functional traits are important  Lots of research underway  24 countries planning health analyses  People want to exchange knowledge  Lots of interest in workshops  Some interest in new guidelines
  • 17. 2012 ADSA-AMPA-ASAS-CSAS-WSASAS Joint Annual Meeting, Phoenix, AZ, July 17, 2012 (17) Cole Current FTWG activities  “Recording, Evaluation and Genetic Improvement of Health Traits”  Accepted by the ICAR General Assembly 38th ICAR Biennial Session  Included in the 2012 ICAR Guidelines  “Recording, Evaluation and Genetic Improvement of Female Fertility”  Under development
  • 18. 2012 ADSA-AMPA-ASAS-CSAS-WSASAS Joint Annual Meeting, Phoenix, AZ, July 17, 2012 (18) Cole Thanks to our participants! Argentina, Australia, Austria, Belgium, Canada, Chile, Croatia, Czech Republic, Denmark, Estonia, Finland, France, Germany, Greece, Hungary, Ireland, Island of Jersey, Korea, Lithuania, The Netherlands, Norway, Poland, Portugal, Romania, Slovenia, South Africa, United States, Uzbekistan
  • 19. 2012 ADSA-AMPA-ASAS-CSAS-WSASAS Joint Annual Meeting, Phoenix, AZ, July 17, 2012 (19) Cole It's not too late to respond!  Submissions accepted through 30 September, 2012  Download PDF from FTWG website  http://www.icar.org/pages/working_groups /wg_functional_traits.htm  Complete form and return by e-mail  icar@icar.org