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Eukaryotic and
Prokaryotic Cells
    AHMP 5406
Objectives:
1.   Discuss the key differences between prokaryotic and
     eukaryotic cellular components
2.   Describe the basic structure of mammalian eukaryotic
     cells
3.   Discuss the different nutritional classes
4.   Explain the endosymbiotic theory and development of
     organelles in the Euk. cell
5.   Compare and contrast the genome organization of
     prokaryotes versus eukaryotes
6.   Compare the different ways new genes are generated
     from existing genes
7.   Explain why the human genome is complex
Objectives:
1.   Discuss the key differences between prokaryotic and
     eukaryotic cellular components
2.   Describe the basic structure of mammalian eukaryotic
     cells
3.   Discuss the different nutritional classes
4.   Explain the endosymbiotic theory and development of
     organelles in the Euk. cell
5.   Compare and contrast the genome organization of
     prokaryotes versus eukaryotes
6.   Compare the different ways new genes are generated
     from existing genes
7.   Explain why the human genome is complex
1
       Features All Cells Share
    Hereditary info stored in DNA
    Proteins are used as catalysts
    DNA replication occurs through templated
    polymerization
    Hereditary info transcribed into RNA
    RNA translated into protein

    Later we will discuss these things in
    greater detail
From DNA to Protein
  (Why is this eukaryotic?)
1
              Prokaryotic cells:
    No membrane bound organelles
    Simple genome organization
    Genes usually do not have introns
    Between 500 and 4000 genes
    
        M. genitalium has 477 genes
    Great degree of diversity
    Unicellular
1




    Mycoplasma
     genitalium
1
                 Eukaryotic cells
    All organelles are membrane-bound
    Complex genome organization
    Large genome size
    Between 6,000 and 30,000 genes
    Genes have introns
       Where is the genetic diversity?
    Large amount of regulatory DNA
       To control gene expression
    High degree of genetic redundancy
    Unicellular or multicellular
1
Objectives:
1.   Discuss the key differences between prokaryotic and
     eukaryotic cellular components
2.   Describe the basic structure of mammalian eukaryotic
     cells
3.   Discuss the different nutritional classes
4.   Explain the endosymbiotic theory and development of
     organelles in the Euk. cell
5.   Compare and contrast the genome organization of
     prokaryotes versus eukaryotes
6.   Compare the different ways new genes are generated
     from existing genes
7.   Explain why the human genome is complex
1 and 2




          General eukaryotic cell
Objectives:
1.   Discuss the key differences between prokaryotic and
     eukaryotic cellular components
2.   Describe the basic structure of mammalian eukaryotic
     cells
3.   Discuss the different nutritional classes
4.   Explain the endosymbiotic theory and development of
     organelles in the Euk. cell
5.   Compare and contrast the genome organization of
     prokaryotes versus eukaryotes
6.   Compare the different ways new genes are generated
     from existing genes
7.   Explain why the human genome is complex
3
    Cells can be powered by different
             energy sources
    I eat other living things!
    
        Organotrophic
           Animals
           Protists etc.

    I need a tan?
       Phototrohpic
           Bacteria
           Plants
           Algae

    I eat dirt?
       Lithotropic
           Arcaebacteria
Objectives:
1.   Discuss the key differences between prokaryotic and
     eukaryotic cellular components
2.   Describe the basic structure of mammalian eukaryotic
     cells
3.   Discuss the different nutritional classes
4.   Explain the endosymbiotic theory and development of
     organelles in the Euk. cell
5.   Compare and contrast the genome organization of
     prokaryotes versus eukaryotes
6.   Compare the different ways new genes are generated
     from existing genes
7.   Explain why the human genome is complex
4
     Eukaryotic cell may have been
               predators
     The primordial eukaryotic cell may have
    survived by eating other cells

    This would require:
    
        A large cell
       A flexible membrane
       An elaborate cytoskeleton
    
        Protected DNA (in an organelle, which one?)
4                 Dinidium is a cilliated protozoan

                                      Lunch!




    He looks hungry
4
4
4
Objectives:
1.   Discuss the key differences between prokaryotic and
     eukaryotic cellular components
2.   Describe the basic structure of mammalian eukaryotic
     cells
3.   Discuss the different nutritional classes
4.   Explain the endosymbiotic theory and development of
     organelles in the Euk. cell
5.   Compare and contrast the genome organization of
     prokaryotes versus eukaryotes
6.   Compare the different ways new genes are generated
     from existing genes
7.   Explain why the human genome is complex
5
    Genome organization in Prok. and
                Euk.
     Prokaryotes
        Circular DNA
           mtDNA very similar


    Eukaryotes
        Linear DNA
        nuclear DNA
5
    Prokaryotic DNA
5
    Eukaryotic DNA
      DNA packaged in a
     chromosome

     Linear DNA

     Associated proteins

     More details later
Objectives:
1.   Discuss the key differences between prokaryotic and
     eukaryotic cellular components
2.   Describe the basic structure of mammalian eukaryotic
     cells
3.   Discuss the different nutritional classes
4.   Explain the endosymbiotic theory and development of
     organelles in the Euk. cell
5.   Compare and contrast the genome organization of
     prokaryotes versus eukaryotes
6.   Compare the different ways new genes are generated
     from existing genes
7.   Explain why the human genome is complex
6
    Ways to generate new genes from preexisting genes
      Intragenic mutation
       
           Simply a mutation in the sequence

      Gene duplication
       
           Whole gene is just recopied into different part of the genome

      DNA segment shuffling
       
           Similar genes may exchange segments

      Horizontal transfer
       
           Cell to cell transfer of genetic material
              e.g. Plasmids
              ancient mitochondrial genes
              Viruses
              Sex
6
                Gene Families
     Created by generation of different genes
    from a precursor
     Speciation results in orthologous genes
       An organismal phylogeny is produced
    Gene duplication can result in paralogous
    genes
       A gene phylogeny is produced
Objectives:
1.   Discuss the key differences between prokaryotic and
     eukaryotic cellular components
2.   Describe the basic structure of mammalian eukaryotic
     cells
3.   Discuss the different nutritional classes
4.   Explain the endosymbiotic theory and development of
     organelles in the Euk. cell
5.   Compare and contrast the genome organization of
     prokaryotes versus eukaryotes
6.   Compare the different ways new genes are generated
     from existing genes
7.   Explain why the human genome is complex
7
    The human genome is complex:




        Partly because of duplications
7



 Regulatory
   DNA is
 everywhere
in eukaryotic
  genomes
7
    mRNA Structure
7
    Comparative Genome Sizes

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Lecture

  • 2. Objectives: 1. Discuss the key differences between prokaryotic and eukaryotic cellular components 2. Describe the basic structure of mammalian eukaryotic cells 3. Discuss the different nutritional classes 4. Explain the endosymbiotic theory and development of organelles in the Euk. cell 5. Compare and contrast the genome organization of prokaryotes versus eukaryotes 6. Compare the different ways new genes are generated from existing genes 7. Explain why the human genome is complex
  • 3. Objectives: 1. Discuss the key differences between prokaryotic and eukaryotic cellular components 2. Describe the basic structure of mammalian eukaryotic cells 3. Discuss the different nutritional classes 4. Explain the endosymbiotic theory and development of organelles in the Euk. cell 5. Compare and contrast the genome organization of prokaryotes versus eukaryotes 6. Compare the different ways new genes are generated from existing genes 7. Explain why the human genome is complex
  • 4. 1 Features All Cells Share Hereditary info stored in DNA Proteins are used as catalysts DNA replication occurs through templated polymerization Hereditary info transcribed into RNA RNA translated into protein Later we will discuss these things in greater detail
  • 5. From DNA to Protein (Why is this eukaryotic?)
  • 6. 1 Prokaryotic cells: No membrane bound organelles Simple genome organization Genes usually do not have introns Between 500 and 4000 genes  M. genitalium has 477 genes Great degree of diversity Unicellular
  • 7. 1 Mycoplasma genitalium
  • 8. 1 Eukaryotic cells All organelles are membrane-bound Complex genome organization Large genome size Between 6,000 and 30,000 genes Genes have introns  Where is the genetic diversity? Large amount of regulatory DNA  To control gene expression High degree of genetic redundancy Unicellular or multicellular
  • 9. 1
  • 10. Objectives: 1. Discuss the key differences between prokaryotic and eukaryotic cellular components 2. Describe the basic structure of mammalian eukaryotic cells 3. Discuss the different nutritional classes 4. Explain the endosymbiotic theory and development of organelles in the Euk. cell 5. Compare and contrast the genome organization of prokaryotes versus eukaryotes 6. Compare the different ways new genes are generated from existing genes 7. Explain why the human genome is complex
  • 11. 1 and 2 General eukaryotic cell
  • 12. Objectives: 1. Discuss the key differences between prokaryotic and eukaryotic cellular components 2. Describe the basic structure of mammalian eukaryotic cells 3. Discuss the different nutritional classes 4. Explain the endosymbiotic theory and development of organelles in the Euk. cell 5. Compare and contrast the genome organization of prokaryotes versus eukaryotes 6. Compare the different ways new genes are generated from existing genes 7. Explain why the human genome is complex
  • 13. 3 Cells can be powered by different energy sources I eat other living things!  Organotrophic Animals Protists etc. I need a tan?  Phototrohpic Bacteria Plants Algae I eat dirt?  Lithotropic Arcaebacteria
  • 14. Objectives: 1. Discuss the key differences between prokaryotic and eukaryotic cellular components 2. Describe the basic structure of mammalian eukaryotic cells 3. Discuss the different nutritional classes 4. Explain the endosymbiotic theory and development of organelles in the Euk. cell 5. Compare and contrast the genome organization of prokaryotes versus eukaryotes 6. Compare the different ways new genes are generated from existing genes 7. Explain why the human genome is complex
  • 15. 4 Eukaryotic cell may have been predators The primordial eukaryotic cell may have survived by eating other cells This would require:  A large cell  A flexible membrane  An elaborate cytoskeleton  Protected DNA (in an organelle, which one?)
  • 16. 4 Dinidium is a cilliated protozoan Lunch! He looks hungry
  • 17. 4
  • 18. 4
  • 19. 4
  • 20. Objectives: 1. Discuss the key differences between prokaryotic and eukaryotic cellular components 2. Describe the basic structure of mammalian eukaryotic cells 3. Discuss the different nutritional classes 4. Explain the endosymbiotic theory and development of organelles in the Euk. cell 5. Compare and contrast the genome organization of prokaryotes versus eukaryotes 6. Compare the different ways new genes are generated from existing genes 7. Explain why the human genome is complex
  • 21. 5 Genome organization in Prok. and Euk. Prokaryotes  Circular DNA mtDNA very similar Eukaryotes  Linear DNA  nuclear DNA
  • 22. 5 Prokaryotic DNA
  • 23. 5 Eukaryotic DNA DNA packaged in a chromosome Linear DNA Associated proteins More details later
  • 24. Objectives: 1. Discuss the key differences between prokaryotic and eukaryotic cellular components 2. Describe the basic structure of mammalian eukaryotic cells 3. Discuss the different nutritional classes 4. Explain the endosymbiotic theory and development of organelles in the Euk. cell 5. Compare and contrast the genome organization of prokaryotes versus eukaryotes 6. Compare the different ways new genes are generated from existing genes 7. Explain why the human genome is complex
  • 25. 6 Ways to generate new genes from preexisting genes Intragenic mutation  Simply a mutation in the sequence Gene duplication  Whole gene is just recopied into different part of the genome DNA segment shuffling  Similar genes may exchange segments Horizontal transfer  Cell to cell transfer of genetic material e.g. Plasmids ancient mitochondrial genes Viruses Sex
  • 26. 6 Gene Families Created by generation of different genes from a precursor Speciation results in orthologous genes  An organismal phylogeny is produced Gene duplication can result in paralogous genes  A gene phylogeny is produced
  • 27. Objectives: 1. Discuss the key differences between prokaryotic and eukaryotic cellular components 2. Describe the basic structure of mammalian eukaryotic cells 3. Discuss the different nutritional classes 4. Explain the endosymbiotic theory and development of organelles in the Euk. cell 5. Compare and contrast the genome organization of prokaryotes versus eukaryotes 6. Compare the different ways new genes are generated from existing genes 7. Explain why the human genome is complex
  • 28. 7 The human genome is complex: Partly because of duplications
  • 29. 7 Regulatory DNA is everywhere in eukaryotic genomes
  • 30. 7 mRNA Structure
  • 31. 7 Comparative Genome Sizes