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Assignment on ‗Application of isomerism in drug molecules‘
Course – Medicinal Chemistry 2
Submitted by, Submitted to,
Md. Azamu Shahiullah Prottoy Dr. S. M. Raquibul Hasan
Id – 11146018 Lecturer
BRAC University BRAC university
Isomerism
Isomerism, the existence of molecules that have the same numbers of the same kinds of atoms (and hence the
same formula) but differ in chemical and physical properties. The roots of the word isomer are Greek—
isosplus meros, or ―equal parts.‖ Stated colloquially, isomers are chemical compounds that have the same parts
but are nonetheless not the same.
Types of Isomerism
Drug Isomerism and Chirality
Stereoisomers differ in pharmacokinetic and pharmacodynamic properties. Pharmacokinetic differences
resulting out of stereoisomerism can be in Absorption like
 L-Methotrexate is better absorbed than D-Methotrexate.
 Esomeprazole is more bioavailable than racemic omeprazole
 In distribution like S-Warfarin is more extensively bound to albumin than R-Warfarin, hence it has
lower volume of distribution. In metabolism like S-Warfarin is more potent and metabolized by ring
oxidation while R-Warfarin is less potent and metabolized by side chain reduction, half life of S-
Warfarin is 32 hours while it is 54 hours for R-Warfarin.
 Levocetrizine has smaller volume of distribution than its dextroisomer.
 d-Propranolol is more extensively bound to proteins than l-Propranolol.
Pharmacodynamic differences resulting out of stereoisomerism can be in Pharmacological activity and
potency like
 l-Propranolol has beta-adrenoceptors blocking action while d-propranolol is inactive.
 Carvedilol is a racemic mixture, the S(-) isomer is a nonselective beta-adrenoceptor blocker, while
both S(-) and R(+) isomers have approximately equally alpha-blocking potency.
 S-Timolol is more potent alpha-blocker than R-timolol but both are equipotent ocular hypotensive
agents.
 Labetalol is formulated as a racemic mixture of four isomers.
Two of these isomers - the (S, S)- and (R, S)- isomer are relatively inactive, a third (S, R)- is a
potent alpha-blocker and the fourth one (R, R)- is a potent beta-blocker.
 Labetalol has a 3:1 ratio of beta: Alpha antagonism after oral administration.
 Sotalol is formulated as a racemic mixture of D- and L-isomers, L-isomer has beta-blocking activity
while D-isomer has no beta-blocking activity. The action potential prolonging potential is due to L-
isomer.
 Nebivolol has highly selectively beta-1-blocking effects, while the L-isomers causes vasodilatation.
 Most beta-2-selective agonist drugs are formulated as a racemic mixture of R- and S- isomers. Only the
R-isomer has the beta-2-agonistic activity while S-isomer has no beta-2-agonistic activity, even S-
isomer promotes the inflammation.
 Now a days, Salbutamol is available as a single isomeric preparation of R-isomer as levalbuterol.
 Halothane, enflurane, and isoflurane are chiral drugs with different anesthetic potencies. D- (+) 2R,3S
propoxyphene is analgesic while (-) 2S,3R propoxyphene has antitussive action.
 Ibuprofen is a racemic mixture. S-ibuprofen is active form and R-ibuprofen is inactive. Dexibuprofen,
its active enantiomer, is marketed now as single enantiomer with an effective dose of 50% of ibuprofen
and fewer side effects.
Ibuprofen containing both (S) and (R) isomers, where it is the (S) isomer that is the eutomer, but the (R)
isomer can bechanged in the body to the (S) isomer. This change from (R) enantiomer to (S) through a
metabolic inversion of configuration does nothing to the (S) but amazingly makes the (R) enantiomer
medicinal like the (S).
Enantiopure Drugs
An enantiopure drug is a pharmaceutical that is available in one specific enantiomeric form. Most biological
molecules (proteins, sugars, etc.) are present in only one of many chiral forms, so different enantiomers of a
chiral drug molecule bind differently (or not at all) to target receptors. One enantiomer of a drug may have a
desired beneficial effect while the other may cause serious and undesired side effects, or sometimes even
beneficial but entirely different effects. Advances in industrial chemical processes have made it economical for
pharmaceutical manufacturers to take drugs that were originally marketed as a racemic mixture and market the
individual enantiomers, either by specifically manufacturing the desired enantiomer or by resolving
a racemic mixture. On a case-by-case basis, the U.S. Food and Drug Administration (FDA) has allowed single
enantiomers of certain drugs to be marketed under a different name than the racemic mixture. Also case-by-
case, the United States Patent Office has granted patents for single enantiomers of certain drugs. The
regulatory review for marketing approval (safety and efficacy) and for patenting (proprietary rights) is
independent, and differs country by country.
The following table lists pharmaceuticals that have been available in both racemic and single-
enantiomer form.
Racemic mixture Single-enantiomer
Amphetamine (Benzedrine) Dextroamphetamine (Dexedrine)
Bupivacaine (Marcain) Levobupivacaine (Chirocaine)
Cetirizine (Zyrtec / Reactine) Levocetirizine (Xyzal)
Citalopram (Celexa / Cipramil) Escitalopram (Lexapro / Cipralex)
Ibuprofen (Advil / Motrin) Dexibuprofen (Seractil)
Methylphenidate (Ritalin) Dexmethylphenidate (Focalin)
Milnacipran (Ixel / Savella) Levomilnacipran (Fetzima)
Modafinil (Provigil) Armodafinil (Nuvigil)
Ofloxacin (Floxin) Levofloxacin (Levaquin)
Omeprazole (Prilosec) Esomeprazole (Nexium)
Salbutamol (Ventolin) Levalbuterol (Xopenex)
Zopiclone (Imovane) Eszopiclone (Lunesta)
The following are cases where the individual enantiomers have markedly different effects:
 Thalidomide: Thalidomide is racemic. One enantiomer is effective against morning sickness, whereas
the other isteratogenic. However, the enantiomers are converted into each other in vivo.[3]
Dosing with a
single-enantiomer form of the drug will still lead to both the D and L isomers eventually being present
in the patient's serum and thus would not prevent adverse effects (though it might reduce them if the
rate of in vivo conversion can be slowed).
 Ethambutol: Whereas one enantiomer is used to treat tuberculosis, the other causes blindness.
 Naproxen: One enantiomer is used to treat arthritis pain, but the other causes liver poisoning with no
analgesic effect.
 Steroid receptor sites also show stereoisomer specificity.
 Penicillin's activity is stereodependent. The antibiotic must mimic the D-alanine chains that occur in the
cell walls of bacteria in order to react with and subsequently inhibit bacterial transpeptidase enzyme.
 Only L-propranolol is a powerful adrenoceptor antagonist, whereas D-propranolol is not. However,
both have local anesthetic effect.
 The L-isomer of Methorphan, levomethorphan is a potent opioid analgesic, while the D-
isomer, dextromethorphan is a dissociative cough suppressant.
 (S)-(–) isomer of carvedilol, a drug that interacts with adrenoceptors, is 100 times more potent as beta
receptor blockerthan (R)-(+) isomer. However, both the isomers are approximately equipotent as alpha
receptor blockers.
 The D-isomers of amphetamine and methamphetamine are strong CNS stimulants, while the L-isomers
of both drugs lack appreciable CNS(central nervous system) stimulant effects, but instead stimulate the
peripheral nervous system. For this reason, the Levo-isomer of methamphetamine is available as an
OTC nasal inhaler in some countries, while the Dextro-isomer is banned from medical use in all but a
few countries in the world, and highly regulated in those countries who do allow it to be used
medically.
 Ketamine is commonly composed of R & S enantiomers that have different dissociative and
hallucinogenic properties, whereas the S enantiomer Esketamine is more potent in isolation as a
dissociative.
Adverse Reactions of isomeric drugs
Isomerism can lead to different therapeutic uses and adverse drug reactions like
 Quinine has antimalarial activity while quinidine has an antiarrythmic property.
 L-sotalol is alpha-blocker while d-sotalol is antiarrythmic.
 Levomethorphan is a potent opiod analgesic while dextromethorphan is a cough suppressant.
 R-Thalidomide is sedative while S-Thalidomide has been shown teratogenic effects.
 R-Naproxen is used for arthralgic pain while S-Naproxen is teratogenic.
 D-Ethambutol is antituberculosis drug while L-ethambutol has been found to cause blindness.
 (S) (+)-ketamine causes fewer psychotic emergence reactions, less agitated behavior, and better
intraoperative amnesia, and analgesia than its enantiomer.
 L-dopa, used in treatment for Parkinson's disease has an isomer D-dopa which has never been used
because it causes deficiency of white blood cells and thus susceptibility to infections.
 Two stereoisomers can compete for binding to same receptors like S-methadone antagonizes
respiratory depression action of R-methadone. If the two isomers are of agonist and antagonist type,
then racemic mixture acts as partial agonist like picendol and sulfinpyrazone inhibits the metabolism of
S-Warfarin significantly but not of R-Warfarin.
References
1. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3678675/?report=printable
2. http://voh.chem.ucla.edu/vohtar/spring00/30H/pdf/hui.pdf
3. http://www.ncbi.nlm.nih.gov/pubmed/15080761
4. http://www.britannica.com/EBchecked/topic/296365/isomerism

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Assignment on isomerism

  • 1. Assignment on ‗Application of isomerism in drug molecules‘ Course – Medicinal Chemistry 2 Submitted by, Submitted to, Md. Azamu Shahiullah Prottoy Dr. S. M. Raquibul Hasan Id – 11146018 Lecturer BRAC University BRAC university
  • 2. Isomerism Isomerism, the existence of molecules that have the same numbers of the same kinds of atoms (and hence the same formula) but differ in chemical and physical properties. The roots of the word isomer are Greek— isosplus meros, or ―equal parts.‖ Stated colloquially, isomers are chemical compounds that have the same parts but are nonetheless not the same. Types of Isomerism
  • 3. Drug Isomerism and Chirality Stereoisomers differ in pharmacokinetic and pharmacodynamic properties. Pharmacokinetic differences resulting out of stereoisomerism can be in Absorption like  L-Methotrexate is better absorbed than D-Methotrexate.  Esomeprazole is more bioavailable than racemic omeprazole  In distribution like S-Warfarin is more extensively bound to albumin than R-Warfarin, hence it has lower volume of distribution. In metabolism like S-Warfarin is more potent and metabolized by ring oxidation while R-Warfarin is less potent and metabolized by side chain reduction, half life of S- Warfarin is 32 hours while it is 54 hours for R-Warfarin.  Levocetrizine has smaller volume of distribution than its dextroisomer.  d-Propranolol is more extensively bound to proteins than l-Propranolol. Pharmacodynamic differences resulting out of stereoisomerism can be in Pharmacological activity and potency like  l-Propranolol has beta-adrenoceptors blocking action while d-propranolol is inactive.  Carvedilol is a racemic mixture, the S(-) isomer is a nonselective beta-adrenoceptor blocker, while both S(-) and R(+) isomers have approximately equally alpha-blocking potency.  S-Timolol is more potent alpha-blocker than R-timolol but both are equipotent ocular hypotensive agents.  Labetalol is formulated as a racemic mixture of four isomers. Two of these isomers - the (S, S)- and (R, S)- isomer are relatively inactive, a third (S, R)- is a potent alpha-blocker and the fourth one (R, R)- is a potent beta-blocker.  Labetalol has a 3:1 ratio of beta: Alpha antagonism after oral administration.
  • 4.  Sotalol is formulated as a racemic mixture of D- and L-isomers, L-isomer has beta-blocking activity while D-isomer has no beta-blocking activity. The action potential prolonging potential is due to L- isomer.  Nebivolol has highly selectively beta-1-blocking effects, while the L-isomers causes vasodilatation.  Most beta-2-selective agonist drugs are formulated as a racemic mixture of R- and S- isomers. Only the R-isomer has the beta-2-agonistic activity while S-isomer has no beta-2-agonistic activity, even S- isomer promotes the inflammation.  Now a days, Salbutamol is available as a single isomeric preparation of R-isomer as levalbuterol.  Halothane, enflurane, and isoflurane are chiral drugs with different anesthetic potencies. D- (+) 2R,3S propoxyphene is analgesic while (-) 2S,3R propoxyphene has antitussive action.  Ibuprofen is a racemic mixture. S-ibuprofen is active form and R-ibuprofen is inactive. Dexibuprofen, its active enantiomer, is marketed now as single enantiomer with an effective dose of 50% of ibuprofen and fewer side effects. Ibuprofen containing both (S) and (R) isomers, where it is the (S) isomer that is the eutomer, but the (R) isomer can bechanged in the body to the (S) isomer. This change from (R) enantiomer to (S) through a metabolic inversion of configuration does nothing to the (S) but amazingly makes the (R) enantiomer medicinal like the (S).
  • 5. Enantiopure Drugs An enantiopure drug is a pharmaceutical that is available in one specific enantiomeric form. Most biological molecules (proteins, sugars, etc.) are present in only one of many chiral forms, so different enantiomers of a chiral drug molecule bind differently (or not at all) to target receptors. One enantiomer of a drug may have a desired beneficial effect while the other may cause serious and undesired side effects, or sometimes even beneficial but entirely different effects. Advances in industrial chemical processes have made it economical for pharmaceutical manufacturers to take drugs that were originally marketed as a racemic mixture and market the individual enantiomers, either by specifically manufacturing the desired enantiomer or by resolving a racemic mixture. On a case-by-case basis, the U.S. Food and Drug Administration (FDA) has allowed single enantiomers of certain drugs to be marketed under a different name than the racemic mixture. Also case-by- case, the United States Patent Office has granted patents for single enantiomers of certain drugs. The regulatory review for marketing approval (safety and efficacy) and for patenting (proprietary rights) is independent, and differs country by country. The following table lists pharmaceuticals that have been available in both racemic and single- enantiomer form. Racemic mixture Single-enantiomer Amphetamine (Benzedrine) Dextroamphetamine (Dexedrine) Bupivacaine (Marcain) Levobupivacaine (Chirocaine) Cetirizine (Zyrtec / Reactine) Levocetirizine (Xyzal) Citalopram (Celexa / Cipramil) Escitalopram (Lexapro / Cipralex) Ibuprofen (Advil / Motrin) Dexibuprofen (Seractil) Methylphenidate (Ritalin) Dexmethylphenidate (Focalin) Milnacipran (Ixel / Savella) Levomilnacipran (Fetzima) Modafinil (Provigil) Armodafinil (Nuvigil) Ofloxacin (Floxin) Levofloxacin (Levaquin) Omeprazole (Prilosec) Esomeprazole (Nexium)
  • 6. Salbutamol (Ventolin) Levalbuterol (Xopenex) Zopiclone (Imovane) Eszopiclone (Lunesta) The following are cases where the individual enantiomers have markedly different effects:  Thalidomide: Thalidomide is racemic. One enantiomer is effective against morning sickness, whereas the other isteratogenic. However, the enantiomers are converted into each other in vivo.[3] Dosing with a single-enantiomer form of the drug will still lead to both the D and L isomers eventually being present in the patient's serum and thus would not prevent adverse effects (though it might reduce them if the rate of in vivo conversion can be slowed).  Ethambutol: Whereas one enantiomer is used to treat tuberculosis, the other causes blindness.  Naproxen: One enantiomer is used to treat arthritis pain, but the other causes liver poisoning with no analgesic effect.  Steroid receptor sites also show stereoisomer specificity.  Penicillin's activity is stereodependent. The antibiotic must mimic the D-alanine chains that occur in the cell walls of bacteria in order to react with and subsequently inhibit bacterial transpeptidase enzyme.  Only L-propranolol is a powerful adrenoceptor antagonist, whereas D-propranolol is not. However, both have local anesthetic effect.  The L-isomer of Methorphan, levomethorphan is a potent opioid analgesic, while the D- isomer, dextromethorphan is a dissociative cough suppressant.  (S)-(–) isomer of carvedilol, a drug that interacts with adrenoceptors, is 100 times more potent as beta receptor blockerthan (R)-(+) isomer. However, both the isomers are approximately equipotent as alpha receptor blockers.  The D-isomers of amphetamine and methamphetamine are strong CNS stimulants, while the L-isomers of both drugs lack appreciable CNS(central nervous system) stimulant effects, but instead stimulate the peripheral nervous system. For this reason, the Levo-isomer of methamphetamine is available as an OTC nasal inhaler in some countries, while the Dextro-isomer is banned from medical use in all but a few countries in the world, and highly regulated in those countries who do allow it to be used medically.
  • 7.  Ketamine is commonly composed of R & S enantiomers that have different dissociative and hallucinogenic properties, whereas the S enantiomer Esketamine is more potent in isolation as a dissociative. Adverse Reactions of isomeric drugs Isomerism can lead to different therapeutic uses and adverse drug reactions like  Quinine has antimalarial activity while quinidine has an antiarrythmic property.  L-sotalol is alpha-blocker while d-sotalol is antiarrythmic.  Levomethorphan is a potent opiod analgesic while dextromethorphan is a cough suppressant.  R-Thalidomide is sedative while S-Thalidomide has been shown teratogenic effects.  R-Naproxen is used for arthralgic pain while S-Naproxen is teratogenic.  D-Ethambutol is antituberculosis drug while L-ethambutol has been found to cause blindness.  (S) (+)-ketamine causes fewer psychotic emergence reactions, less agitated behavior, and better intraoperative amnesia, and analgesia than its enantiomer.  L-dopa, used in treatment for Parkinson's disease has an isomer D-dopa which has never been used because it causes deficiency of white blood cells and thus susceptibility to infections.  Two stereoisomers can compete for binding to same receptors like S-methadone antagonizes respiratory depression action of R-methadone. If the two isomers are of agonist and antagonist type, then racemic mixture acts as partial agonist like picendol and sulfinpyrazone inhibits the metabolism of S-Warfarin significantly but not of R-Warfarin.
  • 8. References 1. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3678675/?report=printable 2. http://voh.chem.ucla.edu/vohtar/spring00/30H/pdf/hui.pdf 3. http://www.ncbi.nlm.nih.gov/pubmed/15080761 4. http://www.britannica.com/EBchecked/topic/296365/isomerism