SlideShare a Scribd company logo
1 of 60
MICROFLUIDICS
1. Test tubes microscopic reservoirs
2. Pipettes microchannels
3. Heating block/Oven microheaters
4. Electrophoresis/HPLC CE/-LC
INTEGRATION
First commercially available CE Chip
What are avantages?
o Capillary Electrophoresis is has far better
resolution (allows higher E) and it is faster
• Easier to use than Slabgel
versus
Single Cell Transcriptomics
Fluidigm
Microfluidics Systems
Properties
Diffusion = fast diffusion rates
Electrophoresis = high fields
….many more…
Flow
Flow
Sample
Channel
Second
Solution
A membrane separates the microchannel main channel from a
second solution to deliver, extract or provide electrical contact.
Membrane-Assisted Sample Preparation
Membrane
Cation or anion ion-selective Membranes
Flow
Flow
Sample
Channel
Second
Solution
Semipermeable membrane separates sample channel from the
deuterating solution
Membrane-Assisted Sample Preparation
Semipermeable
Membrane
Semi-permeable Membranes
FlowSample
Channel
Second
Solution
Semipermeable membrane separates the sample channel from the
deuterating solution
Membrane-Assisted Sample Preparation
Membrane
Diffusion in Microfluidic Systems
Distance Heavy water Glucose Hemoglobin
25 um 0.14 s 0.6 s 4.5 s
50 um 0.56 s 2.5 s 18 s
100 um 2.2 s 10 s 72 s
1 mm 3.8 min 16 min 120 min
Diffusion in Microfluidic Systems
Membrane-Assisted Sample Preparation
Configurations:
o Single Membrane Section
o Double Membrane Section
o Multi Membane Section
- Change the composition right before the ionization
-Add reagents (no necessity of mixing or volumetric
addition)
Single Membrane Configuration
Basic application
e e e e e e
e
e
e
e
e
e
D O2
D O2
D O2
D O2 D O2
e e e e
O
D
+
D
+
D
+
D
+
D
+
D
+
O
D
+
H
+ H
+
H
+
M
MM M
D
D
DM
D
D
D MD
D
D
H2
O
Cation
selective
membrane
Main channel
Second channel
SINGLE MEMBRANE
Membrane Probe
Microfluidic Membrane-Assisted Molecular Addition
1 9 5 5 .8 3
2 2 0 0 .0 0
0
1000
2000
3000
4000
5000
6000
7000
8000
9000
10000
11000
500 1000 1500 2000 2500 3000
Mass
GEN (00.96683:01.13350)
Amplitude
m /z
Membrane Probe – pH Scan
Myoglobin, 20 mM ammonium acetate pH 7.4
Second solution:100 % water
8 4 8 .2 8
8 9 2 .8 4
9 9 7 .6 5
1 0 5 9 .8 8
1 1 3 0 .5 4
1 2 1 1 .1 3
1 4 1 2 .7 7
1 5 4 0 .9 6
1 6 9 5 .1 1
0
2500
5000
7500
10000
12500
15000
17500
500 1000 1500 2000 2500 3000
Mass
GEN (16.56708:16.76708)
Amplitude
m /z
Membrane Probe – pH Scan
Myoglobin, 20 mM ammonium acetate pH 7.4
Second solution: 5 % acetic acid
1 5 4 4 .7 8
1 7 6 5 .2 7
0
500
1000
1500
2000
2500
3000
3500
4000
4500
5000
5500
250 500 750 1000 1250 1500 1750 2000
Mass
GEN (01.20075:01.46766)
Amplitude
m /z
Membrane Probe – pH Scan
Second solution:
100 % water
Second solution:
5 formic acid
7 2 7 .7 6
7 7 3 .0 9
8 2 4 .4 8
8 8 3 .2 8
9 5 1 .1 0
1 0 3 0 .2 5
1 1 2 3 .8 4
1 2 3 5 .9 6
1 3 7 3 .1 8
1 5 4 4 .7 9 1 7 6 5 .2 5
0
1000
2000
3000
4000
5000
6000
7000
8000
9000
10000
11000
12000
250 500 750 1000 1250 1500 1750 2000 2250 2500
Mass
GEN (00.43358:00.90025)
Amplitude
m /z
Cytochrome C
20 mM ammonium acetate pH 7.4
Decouples the upstream analytical conditions to ESI conditions
Membrane-based Metal-ion Addition
to study Metal-binding peptides
[M+H]+
1
[M+Zn]+
1
[M+H]+
1
[M+2Zn]+
1
Online ESI Membrane-probe Studies of Metal-binding Peptides
SECOND
SOLUTION:
WATER
SECOND SOLUTION:
ZnCl
Use of Microfluidic Membrane-base HDX MS to
study amyloid proteins
Membrane-Assisted Sample Preparation
Configurations:
o Single Membrane Section
o Double Membrane Section
o Multi Membane Section
Microfluidics Systems
Properties
Diffusion = fast diffusion rates
Electrophoresis = high fields
….many more!!
small cation (e.g., tris-H+)
small anion (e.g., Cl-)
negatively charged molecules
neutral compounds or those with low µ
Anodic chamberCathodic chamber
Two Membrane Section
Crude sample
flows in
Uncaptured compound
flow out
current
Two-membrane section
ElectroCapture
Electrocapture
Charge particle
Electrocapture conditions will be fulfilled when
Ve ≥ Vf
Electrophoretic velocity is given by,
Ve = ue x E
Ve = Electrophoretic velocity
ue = Electrophoresis mobility
E = Electric field
Positive
Electrod
e
Negativ
e
Electrod
e
Flow
Peek
tubing
Conductive
membrane
Captured
protein
125 m
Image downstream cathode junction during capture-device operation
Protein captured at 30 nL spot
General Operation
small cation (e.g., tris-H+)
small anion (e.g., Cl-)
negatively charged molecules
neutral compounds or those with low µ
Anodic chamberCathodic chamber
A. Capture
Crude sample
flows in.
Uncaptured compound
flow out.
current
small cation (e.g., tris-H+)
small anion (e.g., Cl-)
negatively charged
moleculesneutral compounds or those with low µ
Conditioning solution
flows in
Impurities are
washed out
Anodic chamberCathodic chamber
B. Injection of a new solution
current
small cation (e.g., tris-H+)
small anion (e.g., Cl-)
negatively charged molecules
neutral compounds or those with low µ
Conditioning solution
flows in Protein band is swept
Anodic chamberCathodic chamber
C. Release of the capture molecules
Protein band
Anodic chamber Cathodic chamber
Flow
Capillary
electrophoresis
MALDI-MS Sample Prep
Microreactions
Analytical Applications
Separations
ElectroCapture
Membrane Proteins ESI-MS
ESI-MS analysis of bacteriorhodopsin in N-octyl beta D-glucopyranoside
m/z
800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800 1900
%
0
100
%
0
100
br-12 90 (1.741) Sm (Mn, 2x8.00); Cm (90:105) TOF MS ES+
15.8894.64
877.63
829.62
899.60
927.61
1186.84
928.59
1070.221035.69
955.57
983.57 1086.18
1187.86
1214.89
1243.84
1334.00 1363.45
1493.66
br-7 146 (2.819) Sm (Mn, 2x8.00); Cm (144:148) TOF MS ES+
21.2
A: 27050.99±6.66
901.62
878.73
807.65
952.74
1026.75
A26;1041.28
1084.11
1129.24
1231.75 A21
1289.10
1233.27
A20
1353.40
1293.36 1355.16
A19
1424.60
1357.31 1427.23
a
b Succesful determination
Bacteriorhodopsin charge states
[M+nH] +n
Detergent clusters BEFORE
AFTER
ElectroCapture
Data from Dr. Leopol Ilag (Group leader) and M. Shariatgorji, (Grad.Stud.) at Stockholm University
+18H+
+20H+
+22H++24H+
+26H+
ElectroCapture ESI-MS
Hydrophobic Peptides
m/z
939 940 941 942 943 944 945%0
100
%
0
100
gramicidin-u 39 (1.033) Cm (14:39) TOF MS ES+
273941.51
941.47
938.57
939.51
941.54
942.52
942.42
941.71
942.58
943.52
942.64
942.81
944.52
945.48
gramicidin-s 144 (3.216) Cm (124:144) TOF MS ES+
316942.07
941.55
941.47
941.05
940.96
940.53939.50938.55
942.10
942.55
943.06
943.10
943.12
943.53
945.52
944.07 944.51
945.05
m/z
500 1000 1500 2000 2500 3000 3500
%
0
100
%
0
100
gramicidin-u 39 (1.033) Cm (14:39) TOF MS ES+
5.93e3607.54
899.52
894.57
649.60
877.60
1191.40
900.55
901.55
1043.52
1335.35 1481.25
1627.17 1773.01
1871.29
2357.85
2649.45
2942.19
gramicidin-s 144 (3.216) Cm (124:144) TOF MS ES+
3.27e3607.67
609.65
610.65
629.65
953.05
667.60 964.02
UNCLEAN SAMPLE
AFTER
ELECTROCAPTURE
Singly-charged contaminant
Doubly-charged
gramicidin A
Removal of detergents by ElectroCapture for ESI-MS Analysis of
Peptides
Gramidicin
Electrocapture Separations
20
0
Vf = Ve = ue x E
E (V/cm)
Time
Vf > Ve = ue x E
Flow
C. Release of the capture molecules
Separation
Crude Sample
Separation of Tryptic Peptides for Improved MALDI-MS analysis
Arrows indicate peptides not seen on the unprocessed sample
High voltage
Low voltage
pI TRAP
Image from Kisoo Yoo, Jaesool Shim, and Prashanta Dutta Biomicrofluidics 8, 064125 (2014)
Isoelectric focusing
Ampholytes:
Amphoteric molecules that contain both acid
and basic groups, and will exist as zwitterions
in a certain range of pH.
Separation is based on the migration of amphoteric compounds in a electric field, until its net
change of the analyte is cero.
In solution isoelectric focusing, the pH gradient is created by the presence of ampholytes in the
sample matrix.
…from lab prototypes to semi-Commercial Instruments
1. Protein ID, abundances, their variations and modifications
Bottom up - Proteomics
Unfractionated
Mean: 5.5
Std.Dev.: 2
N: 4001
Mean: 3.9
Std.Dev.:
0.5
N: 4304
Single Acidic pI-Trap fraction
Acidic pI-Trap Fraction and Unfractionated Sample Histograms
A pI-Trap acidic-enriched fraction always provides a higher proteome coverage than
unfractionated sample
Replicate 1 Replicate 2 Replicate 3
REPRODUCIBILITY
Ampholyte:
Pharmalyte 3-10
Box plot of significantly changed focusing positions of
proteins in healthy (green) and patient with Progressive
Mild Cognitive Impairment (red) samples.
Possible Clinical Applications
Experimental Workflow
Ampholyte:
0.5% Pharmalyte 6.6-7.6
pI-Trap - AD Scanner
0
0.02
0.04
0.06
0.08
0.1
0.12
0 100 200 300 400 500 600 700 800 900 1000
OpticalDensity,arb.units
Channel nr
Hemoglobin (Bovine)
pI 6.8
Cytochorme C
(Horse heart)
pI 10
UV detector ActiPix D200 on pI-Trap
1 h focusing
Elution at 2 µL/min
5 6 7 8 9 10 11 12 pI
Increasing Proteome
Coverage by pI-Trap
0
200
400
600
800
1000
1200
1400
1600
1800
2000
1 2 3 4 5 6 7 8
Replicates
pI Trap Fractions
Num.
Proteins
Num. of Combined pI Trap Fractions or
Replicates
Proteome Coverage: pITrap Fractionation vs Replicates
(8 pITrap fractions versus octuplicate. All data 1 % FDR)
ORBITRAP XL
Multijunction Microfluidic System
Mohammad Pirmoradian et.al. Submitted Anal.Chem
Multijunction Microfluidic System
Box plot of significantly changed focusing positions of
proteins in healthy (green) and patient with Progressive
Mild Cognitive Impairment (red) samples.
Clinical Applications
Acknowledgments
Prof. Roman Zubarev
Dep. Medical biochemistry and Biophysics
Thorleif Lavold, CEO

More Related Content

What's hot

Ion chromatography copy
Ion chromatography   copyIon chromatography   copy
Ion chromatography copychemnidhi
 
Application Note: A Rapid Procedure for Screening Transuranium Nuclides in Ur...
Application Note: A Rapid Procedure for Screening Transuranium Nuclides in Ur...Application Note: A Rapid Procedure for Screening Transuranium Nuclides in Ur...
Application Note: A Rapid Procedure for Screening Transuranium Nuclides in Ur...PerkinElmer, Inc.
 
Au nanospheres and nanorods for enzyme-free electrochemical biosensor applica...
Au nanospheres and nanorods for enzyme-free electrochemical biosensor applica...Au nanospheres and nanorods for enzyme-free electrochemical biosensor applica...
Au nanospheres and nanorods for enzyme-free electrochemical biosensor applica...Nur Fatihah
 
Ultrasonication Assisted Extraction of Isolation Characterization of Berb...
Ultrasonication Assisted Extraction of Isolation     Characterization of Berb...Ultrasonication Assisted Extraction of Isolation     Characterization of Berb...
Ultrasonication Assisted Extraction of Isolation Characterization of Berb...GuttiPavan
 
76 Lab Review
76 Lab Review76 Lab Review
76 Lab Reviewflguppie
 
Protein Purification Lecture
Protein Purification LectureProtein Purification Lecture
Protein Purification Lectureouopened
 
Lab review
Lab reviewLab review
Lab reviewktanaka2
 
Effectofelectrolyticwaterintakeonlifespanofautoimmunediseasepronemice
EffectofelectrolyticwaterintakeonlifespanofautoimmunediseasepronemiceEffectofelectrolyticwaterintakeonlifespanofautoimmunediseasepronemice
EffectofelectrolyticwaterintakeonlifespanofautoimmunediseasepronemiceKangen Synergy Worldwide
 
Capillary Electrophoresis
Capillary ElectrophoresisCapillary Electrophoresis
Capillary Electrophoresismojdeh y
 
Notes for The principle and performance of capillary electrophoresis
Notes for The principle and performance of capillary electrophoresisNotes for The principle and performance of capillary electrophoresis
Notes for The principle and performance of capillary electrophoresisimprovemed
 
Tosoh Bioscience About Us 11c Linkedin
Tosoh Bioscience About Us 11c LinkedinTosoh Bioscience About Us 11c Linkedin
Tosoh Bioscience About Us 11c LinkedinRomain Dabre
 
Using nanoparticles in hcv diagnosis
Using nanoparticles in  hcv diagnosisUsing nanoparticles in  hcv diagnosis
Using nanoparticles in hcv diagnosisGhamdan Al Tahish
 
Anion Recognition by a Mettaloporphyrin Host
Anion Recognition by a Mettaloporphyrin HostAnion Recognition by a Mettaloporphyrin Host
Anion Recognition by a Mettaloporphyrin HostChaz Cardenas
 
Spectrophotometry Lecture
Spectrophotometry LectureSpectrophotometry Lecture
Spectrophotometry Lectureouopened
 
Affinity chromatography 1
Affinity chromatography 1Affinity chromatography 1
Affinity chromatography 1mpakzadeh
 
HPLC2010 Characterization Of Short Chain Branched Polyolefins By GPC-FTIR
HPLC2010  Characterization Of Short Chain Branched Polyolefins By GPC-FTIRHPLC2010  Characterization Of Short Chain Branched Polyolefins By GPC-FTIR
HPLC2010 Characterization Of Short Chain Branched Polyolefins By GPC-FTIRmzhou45
 
ion exchange chromatography
ion exchange chromatographyion exchange chromatography
ion exchange chromatographyliji jesu
 

What's hot (20)

Ion chromatography copy
Ion chromatography   copyIon chromatography   copy
Ion chromatography copy
 
Application Note: A Rapid Procedure for Screening Transuranium Nuclides in Ur...
Application Note: A Rapid Procedure for Screening Transuranium Nuclides in Ur...Application Note: A Rapid Procedure for Screening Transuranium Nuclides in Ur...
Application Note: A Rapid Procedure for Screening Transuranium Nuclides in Ur...
 
Au nanospheres and nanorods for enzyme-free electrochemical biosensor applica...
Au nanospheres and nanorods for enzyme-free electrochemical biosensor applica...Au nanospheres and nanorods for enzyme-free electrochemical biosensor applica...
Au nanospheres and nanorods for enzyme-free electrochemical biosensor applica...
 
Ultrasonication Assisted Extraction of Isolation Characterization of Berb...
Ultrasonication Assisted Extraction of Isolation     Characterization of Berb...Ultrasonication Assisted Extraction of Isolation     Characterization of Berb...
Ultrasonication Assisted Extraction of Isolation Characterization of Berb...
 
76 Lab Review
76 Lab Review76 Lab Review
76 Lab Review
 
Protein Purification Lecture
Protein Purification LectureProtein Purification Lecture
Protein Purification Lecture
 
Lab review
Lab reviewLab review
Lab review
 
Effectofelectrolyticwaterintakeonlifespanofautoimmunediseasepronemice
EffectofelectrolyticwaterintakeonlifespanofautoimmunediseasepronemiceEffectofelectrolyticwaterintakeonlifespanofautoimmunediseasepronemice
Effectofelectrolyticwaterintakeonlifespanofautoimmunediseasepronemice
 
Capillary Electrophoresis
Capillary ElectrophoresisCapillary Electrophoresis
Capillary Electrophoresis
 
Notes for The principle and performance of capillary electrophoresis
Notes for The principle and performance of capillary electrophoresisNotes for The principle and performance of capillary electrophoresis
Notes for The principle and performance of capillary electrophoresis
 
Tosoh Bioscience About Us 11c Linkedin
Tosoh Bioscience About Us 11c LinkedinTosoh Bioscience About Us 11c Linkedin
Tosoh Bioscience About Us 11c Linkedin
 
Using nanoparticles in hcv diagnosis
Using nanoparticles in  hcv diagnosisUsing nanoparticles in  hcv diagnosis
Using nanoparticles in hcv diagnosis
 
11 Biochemistry _
11 Biochemistry _11 Biochemistry _
11 Biochemistry _
 
Capillary Electrophoresis by Sachin Kuhire
Capillary Electrophoresis by Sachin KuhireCapillary Electrophoresis by Sachin Kuhire
Capillary Electrophoresis by Sachin Kuhire
 
Anion Recognition by a Mettaloporphyrin Host
Anion Recognition by a Mettaloporphyrin HostAnion Recognition by a Mettaloporphyrin Host
Anion Recognition by a Mettaloporphyrin Host
 
Spectrophotometry Lecture
Spectrophotometry LectureSpectrophotometry Lecture
Spectrophotometry Lecture
 
Affinity chromatography 1
Affinity chromatography 1Affinity chromatography 1
Affinity chromatography 1
 
HPLC2010 Characterization Of Short Chain Branched Polyolefins By GPC-FTIR
HPLC2010  Characterization Of Short Chain Branched Polyolefins By GPC-FTIRHPLC2010  Characterization Of Short Chain Branched Polyolefins By GPC-FTIR
HPLC2010 Characterization Of Short Chain Branched Polyolefins By GPC-FTIR
 
ion exchange chromatography
ion exchange chromatographyion exchange chromatography
ion exchange chromatography
 
Gauti
GautiGauti
Gauti
 

Similar to P i trap

Hplc presentation final
Hplc presentation    finalHplc presentation    final
Hplc presentation finalOvesh Gaikwad
 
Advance separation technology: high performance liquidchromatography(HPLC)
 Advance separation technology:  high performance liquidchromatography(HPLC) Advance separation technology:  high performance liquidchromatography(HPLC)
Advance separation technology: high performance liquidchromatography(HPLC)Jabir Jabir
 
High performance liquid chromatography
High performance liquid chromatographyHigh performance liquid chromatography
High performance liquid chromatographyBinodBashyal2
 
Electrophoresis
ElectrophoresisElectrophoresis
ElectrophoresisHerat Soni
 
Measuring pKas, logP and Solubility by Automated titration
Measuring pKas, logP and Solubility by Automated titrationMeasuring pKas, logP and Solubility by Automated titration
Measuring pKas, logP and Solubility by Automated titrationJon Mole
 
Option B, UV/vis spectroscopy, Protein analysis, Gel electrophoresis and buff...
Option B, UV/vis spectroscopy, Protein analysis, Gel electrophoresis and buff...Option B, UV/vis spectroscopy, Protein analysis, Gel electrophoresis and buff...
Option B, UV/vis spectroscopy, Protein analysis, Gel electrophoresis and buff...Lawrence kok
 
Lab review
Lab reviewLab review
Lab reviewktanaka2
 
Protein/DNA Sample preparation methods
Protein/DNA Sample preparation methodsProtein/DNA Sample preparation methods
Protein/DNA Sample preparation methodsRAVI RANJAN
 
Ion exchange chromatoghraphy
Ion exchange chromatoghraphyIon exchange chromatoghraphy
Ion exchange chromatoghraphyPankaj Maurya
 
Life science products of GL Sciences
Life science products of GL SciencesLife science products of GL Sciences
Life science products of GL SciencesGeert Alkema
 
Plasma proteins
Plasma proteinsPlasma proteins
Plasma proteinsPrbn Shah
 
BILS 2015 Tosoh Bioscience
BILS 2015 Tosoh BioscienceBILS 2015 Tosoh Bioscience
BILS 2015 Tosoh BioscienceGBX Events
 
Hplc..
Hplc..Hplc..
Hplc..VN Raj
 

Similar to P i trap (20)

Hplc presentation final
Hplc presentation    finalHplc presentation    final
Hplc presentation final
 
Advance separation technology: high performance liquidchromatography(HPLC)
 Advance separation technology:  high performance liquidchromatography(HPLC) Advance separation technology:  high performance liquidchromatography(HPLC)
Advance separation technology: high performance liquidchromatography(HPLC)
 
Analytical toxicology
Analytical toxicologyAnalytical toxicology
Analytical toxicology
 
High performance liquid chromatography
High performance liquid chromatographyHigh performance liquid chromatography
High performance liquid chromatography
 
Electrophoresis
ElectrophoresisElectrophoresis
Electrophoresis
 
Measuring pKas, logP and Solubility by Automated titration
Measuring pKas, logP and Solubility by Automated titrationMeasuring pKas, logP and Solubility by Automated titration
Measuring pKas, logP and Solubility by Automated titration
 
Option B, UV/vis spectroscopy, Protein analysis, Gel electrophoresis and buff...
Option B, UV/vis spectroscopy, Protein analysis, Gel electrophoresis and buff...Option B, UV/vis spectroscopy, Protein analysis, Gel electrophoresis and buff...
Option B, UV/vis spectroscopy, Protein analysis, Gel electrophoresis and buff...
 
HPLC
HPLCHPLC
HPLC
 
HPLC
HPLCHPLC
HPLC
 
Prabhakar singh ii sem-paper v-hplc, fplc, uplc, rrlc
Prabhakar singh  ii sem-paper v-hplc, fplc, uplc, rrlcPrabhakar singh  ii sem-paper v-hplc, fplc, uplc, rrlc
Prabhakar singh ii sem-paper v-hplc, fplc, uplc, rrlc
 
SOLVENT EXTRACTION
SOLVENT EXTRACTIONSOLVENT EXTRACTION
SOLVENT EXTRACTION
 
Lab review
Lab reviewLab review
Lab review
 
Hplc
HplcHplc
Hplc
 
Kaumil Hplc
Kaumil   HplcKaumil   Hplc
Kaumil Hplc
 
Protein/DNA Sample preparation methods
Protein/DNA Sample preparation methodsProtein/DNA Sample preparation methods
Protein/DNA Sample preparation methods
 
Ion exchange chromatoghraphy
Ion exchange chromatoghraphyIon exchange chromatoghraphy
Ion exchange chromatoghraphy
 
Life science products of GL Sciences
Life science products of GL SciencesLife science products of GL Sciences
Life science products of GL Sciences
 
Plasma proteins
Plasma proteinsPlasma proteins
Plasma proteins
 
BILS 2015 Tosoh Bioscience
BILS 2015 Tosoh BioscienceBILS 2015 Tosoh Bioscience
BILS 2015 Tosoh Bioscience
 
Hplc..
Hplc..Hplc..
Hplc..
 

Recently uploaded

Call Us ≽ 9953322196 ≼ Call Girls In Mukherjee Nagar(Delhi) |
Call Us ≽ 9953322196 ≼ Call Girls In Mukherjee Nagar(Delhi) |Call Us ≽ 9953322196 ≼ Call Girls In Mukherjee Nagar(Delhi) |
Call Us ≽ 9953322196 ≼ Call Girls In Mukherjee Nagar(Delhi) |aasikanpl
 
Vision and reflection on Mining Software Repositories research in 2024
Vision and reflection on Mining Software Repositories research in 2024Vision and reflection on Mining Software Repositories research in 2024
Vision and reflection on Mining Software Repositories research in 2024AyushiRastogi48
 
Dashanga agada a formulation of Agada tantra dealt in 3 Rd year bams agada tanta
Dashanga agada a formulation of Agada tantra dealt in 3 Rd year bams agada tantaDashanga agada a formulation of Agada tantra dealt in 3 Rd year bams agada tanta
Dashanga agada a formulation of Agada tantra dealt in 3 Rd year bams agada tantaPraksha3
 
TOTAL CHOLESTEROL (lipid profile test).pptx
TOTAL CHOLESTEROL (lipid profile test).pptxTOTAL CHOLESTEROL (lipid profile test).pptx
TOTAL CHOLESTEROL (lipid profile test).pptxdharshini369nike
 
Best Call Girls In Sector 29 Gurgaon❤️8860477959 EscorTs Service In 24/7 Delh...
Best Call Girls In Sector 29 Gurgaon❤️8860477959 EscorTs Service In 24/7 Delh...Best Call Girls In Sector 29 Gurgaon❤️8860477959 EscorTs Service In 24/7 Delh...
Best Call Girls In Sector 29 Gurgaon❤️8860477959 EscorTs Service In 24/7 Delh...lizamodels9
 
Cytokinin, mechanism and its application.pptx
Cytokinin, mechanism and its application.pptxCytokinin, mechanism and its application.pptx
Cytokinin, mechanism and its application.pptxVarshiniMK
 
Speech, hearing, noise, intelligibility.pptx
Speech, hearing, noise, intelligibility.pptxSpeech, hearing, noise, intelligibility.pptx
Speech, hearing, noise, intelligibility.pptxpriyankatabhane
 
Neurodevelopmental disorders according to the dsm 5 tr
Neurodevelopmental disorders according to the dsm 5 trNeurodevelopmental disorders according to the dsm 5 tr
Neurodevelopmental disorders according to the dsm 5 trssuser06f238
 
Twin's paradox experiment is a meassurement of the extra dimensions.pptx
Twin's paradox experiment is a meassurement of the extra dimensions.pptxTwin's paradox experiment is a meassurement of the extra dimensions.pptx
Twin's paradox experiment is a meassurement of the extra dimensions.pptxEran Akiva Sinbar
 
Manassas R - Parkside Middle School 🌎🏫
Manassas R - Parkside Middle School 🌎🏫Manassas R - Parkside Middle School 🌎🏫
Manassas R - Parkside Middle School 🌎🏫qfactory1
 
Call Girls in Munirka Delhi 💯Call Us 🔝8264348440🔝
Call Girls in Munirka Delhi 💯Call Us 🔝8264348440🔝Call Girls in Munirka Delhi 💯Call Us 🔝8264348440🔝
Call Girls in Munirka Delhi 💯Call Us 🔝8264348440🔝soniya singh
 
Call Us ≽ 9953322196 ≼ Call Girls In Lajpat Nagar (Delhi) |
Call Us ≽ 9953322196 ≼ Call Girls In Lajpat Nagar (Delhi) |Call Us ≽ 9953322196 ≼ Call Girls In Lajpat Nagar (Delhi) |
Call Us ≽ 9953322196 ≼ Call Girls In Lajpat Nagar (Delhi) |aasikanpl
 
THE ROLE OF PHARMACOGNOSY IN TRADITIONAL AND MODERN SYSTEM OF MEDICINE.pptx
THE ROLE OF PHARMACOGNOSY IN TRADITIONAL AND MODERN SYSTEM OF MEDICINE.pptxTHE ROLE OF PHARMACOGNOSY IN TRADITIONAL AND MODERN SYSTEM OF MEDICINE.pptx
THE ROLE OF PHARMACOGNOSY IN TRADITIONAL AND MODERN SYSTEM OF MEDICINE.pptxNandakishor Bhaurao Deshmukh
 
Call Girls in Munirka Delhi 💯Call Us 🔝9953322196🔝 💯Escort.
Call Girls in Munirka Delhi 💯Call Us 🔝9953322196🔝 💯Escort.Call Girls in Munirka Delhi 💯Call Us 🔝9953322196🔝 💯Escort.
Call Girls in Munirka Delhi 💯Call Us 🔝9953322196🔝 💯Escort.aasikanpl
 
insect anatomy and insect body wall and their physiology
insect anatomy and insect body wall and their  physiologyinsect anatomy and insect body wall and their  physiology
insect anatomy and insect body wall and their physiologyDrAnita Sharma
 
Transposable elements in prokaryotes.ppt
Transposable elements in prokaryotes.pptTransposable elements in prokaryotes.ppt
Transposable elements in prokaryotes.pptArshadWarsi13
 
Microphone- characteristics,carbon microphone, dynamic microphone.pptx
Microphone- characteristics,carbon microphone, dynamic microphone.pptxMicrophone- characteristics,carbon microphone, dynamic microphone.pptx
Microphone- characteristics,carbon microphone, dynamic microphone.pptxpriyankatabhane
 
Evidences of Evolution General Biology 2
Evidences of Evolution General Biology 2Evidences of Evolution General Biology 2
Evidences of Evolution General Biology 2John Carlo Rollon
 

Recently uploaded (20)

Call Us ≽ 9953322196 ≼ Call Girls In Mukherjee Nagar(Delhi) |
Call Us ≽ 9953322196 ≼ Call Girls In Mukherjee Nagar(Delhi) |Call Us ≽ 9953322196 ≼ Call Girls In Mukherjee Nagar(Delhi) |
Call Us ≽ 9953322196 ≼ Call Girls In Mukherjee Nagar(Delhi) |
 
Vision and reflection on Mining Software Repositories research in 2024
Vision and reflection on Mining Software Repositories research in 2024Vision and reflection on Mining Software Repositories research in 2024
Vision and reflection on Mining Software Repositories research in 2024
 
Dashanga agada a formulation of Agada tantra dealt in 3 Rd year bams agada tanta
Dashanga agada a formulation of Agada tantra dealt in 3 Rd year bams agada tantaDashanga agada a formulation of Agada tantra dealt in 3 Rd year bams agada tanta
Dashanga agada a formulation of Agada tantra dealt in 3 Rd year bams agada tanta
 
TOTAL CHOLESTEROL (lipid profile test).pptx
TOTAL CHOLESTEROL (lipid profile test).pptxTOTAL CHOLESTEROL (lipid profile test).pptx
TOTAL CHOLESTEROL (lipid profile test).pptx
 
Best Call Girls In Sector 29 Gurgaon❤️8860477959 EscorTs Service In 24/7 Delh...
Best Call Girls In Sector 29 Gurgaon❤️8860477959 EscorTs Service In 24/7 Delh...Best Call Girls In Sector 29 Gurgaon❤️8860477959 EscorTs Service In 24/7 Delh...
Best Call Girls In Sector 29 Gurgaon❤️8860477959 EscorTs Service In 24/7 Delh...
 
Cytokinin, mechanism and its application.pptx
Cytokinin, mechanism and its application.pptxCytokinin, mechanism and its application.pptx
Cytokinin, mechanism and its application.pptx
 
Speech, hearing, noise, intelligibility.pptx
Speech, hearing, noise, intelligibility.pptxSpeech, hearing, noise, intelligibility.pptx
Speech, hearing, noise, intelligibility.pptx
 
Volatile Oils Pharmacognosy And Phytochemistry -I
Volatile Oils Pharmacognosy And Phytochemistry -IVolatile Oils Pharmacognosy And Phytochemistry -I
Volatile Oils Pharmacognosy And Phytochemistry -I
 
Neurodevelopmental disorders according to the dsm 5 tr
Neurodevelopmental disorders according to the dsm 5 trNeurodevelopmental disorders according to the dsm 5 tr
Neurodevelopmental disorders according to the dsm 5 tr
 
Twin's paradox experiment is a meassurement of the extra dimensions.pptx
Twin's paradox experiment is a meassurement of the extra dimensions.pptxTwin's paradox experiment is a meassurement of the extra dimensions.pptx
Twin's paradox experiment is a meassurement of the extra dimensions.pptx
 
Manassas R - Parkside Middle School 🌎🏫
Manassas R - Parkside Middle School 🌎🏫Manassas R - Parkside Middle School 🌎🏫
Manassas R - Parkside Middle School 🌎🏫
 
Hot Sexy call girls in Moti Nagar,🔝 9953056974 🔝 escort Service
Hot Sexy call girls in  Moti Nagar,🔝 9953056974 🔝 escort ServiceHot Sexy call girls in  Moti Nagar,🔝 9953056974 🔝 escort Service
Hot Sexy call girls in Moti Nagar,🔝 9953056974 🔝 escort Service
 
Call Girls in Munirka Delhi 💯Call Us 🔝8264348440🔝
Call Girls in Munirka Delhi 💯Call Us 🔝8264348440🔝Call Girls in Munirka Delhi 💯Call Us 🔝8264348440🔝
Call Girls in Munirka Delhi 💯Call Us 🔝8264348440🔝
 
Call Us ≽ 9953322196 ≼ Call Girls In Lajpat Nagar (Delhi) |
Call Us ≽ 9953322196 ≼ Call Girls In Lajpat Nagar (Delhi) |Call Us ≽ 9953322196 ≼ Call Girls In Lajpat Nagar (Delhi) |
Call Us ≽ 9953322196 ≼ Call Girls In Lajpat Nagar (Delhi) |
 
THE ROLE OF PHARMACOGNOSY IN TRADITIONAL AND MODERN SYSTEM OF MEDICINE.pptx
THE ROLE OF PHARMACOGNOSY IN TRADITIONAL AND MODERN SYSTEM OF MEDICINE.pptxTHE ROLE OF PHARMACOGNOSY IN TRADITIONAL AND MODERN SYSTEM OF MEDICINE.pptx
THE ROLE OF PHARMACOGNOSY IN TRADITIONAL AND MODERN SYSTEM OF MEDICINE.pptx
 
Call Girls in Munirka Delhi 💯Call Us 🔝9953322196🔝 💯Escort.
Call Girls in Munirka Delhi 💯Call Us 🔝9953322196🔝 💯Escort.Call Girls in Munirka Delhi 💯Call Us 🔝9953322196🔝 💯Escort.
Call Girls in Munirka Delhi 💯Call Us 🔝9953322196🔝 💯Escort.
 
insect anatomy and insect body wall and their physiology
insect anatomy and insect body wall and their  physiologyinsect anatomy and insect body wall and their  physiology
insect anatomy and insect body wall and their physiology
 
Transposable elements in prokaryotes.ppt
Transposable elements in prokaryotes.pptTransposable elements in prokaryotes.ppt
Transposable elements in prokaryotes.ppt
 
Microphone- characteristics,carbon microphone, dynamic microphone.pptx
Microphone- characteristics,carbon microphone, dynamic microphone.pptxMicrophone- characteristics,carbon microphone, dynamic microphone.pptx
Microphone- characteristics,carbon microphone, dynamic microphone.pptx
 
Evidences of Evolution General Biology 2
Evidences of Evolution General Biology 2Evidences of Evolution General Biology 2
Evidences of Evolution General Biology 2
 

P i trap

  • 1. MICROFLUIDICS 1. Test tubes microscopic reservoirs 2. Pipettes microchannels 3. Heating block/Oven microheaters 4. Electrophoresis/HPLC CE/-LC INTEGRATION
  • 3. What are avantages? o Capillary Electrophoresis is has far better resolution (allows higher E) and it is faster • Easier to use than Slabgel versus
  • 5. Microfluidics Systems Properties Diffusion = fast diffusion rates Electrophoresis = high fields ….many more…
  • 6. Flow Flow Sample Channel Second Solution A membrane separates the microchannel main channel from a second solution to deliver, extract or provide electrical contact. Membrane-Assisted Sample Preparation Membrane Cation or anion ion-selective Membranes
  • 7. Flow Flow Sample Channel Second Solution Semipermeable membrane separates sample channel from the deuterating solution Membrane-Assisted Sample Preparation Semipermeable Membrane Semi-permeable Membranes
  • 8. FlowSample Channel Second Solution Semipermeable membrane separates the sample channel from the deuterating solution Membrane-Assisted Sample Preparation Membrane
  • 10. Distance Heavy water Glucose Hemoglobin 25 um 0.14 s 0.6 s 4.5 s 50 um 0.56 s 2.5 s 18 s 100 um 2.2 s 10 s 72 s 1 mm 3.8 min 16 min 120 min Diffusion in Microfluidic Systems
  • 11. Membrane-Assisted Sample Preparation Configurations: o Single Membrane Section o Double Membrane Section o Multi Membane Section
  • 12. - Change the composition right before the ionization -Add reagents (no necessity of mixing or volumetric addition) Single Membrane Configuration Basic application
  • 13. e e e e e e e e e e e e D O2 D O2 D O2 D O2 D O2 e e e e O D + D + D + D + D + D + O D + H + H + H + M MM M D D DM D D D MD D D H2 O Cation selective membrane Main channel Second channel SINGLE MEMBRANE Membrane Probe
  • 15.
  • 16. 1 9 5 5 .8 3 2 2 0 0 .0 0 0 1000 2000 3000 4000 5000 6000 7000 8000 9000 10000 11000 500 1000 1500 2000 2500 3000 Mass GEN (00.96683:01.13350) Amplitude m /z Membrane Probe – pH Scan Myoglobin, 20 mM ammonium acetate pH 7.4 Second solution:100 % water
  • 17. 8 4 8 .2 8 8 9 2 .8 4 9 9 7 .6 5 1 0 5 9 .8 8 1 1 3 0 .5 4 1 2 1 1 .1 3 1 4 1 2 .7 7 1 5 4 0 .9 6 1 6 9 5 .1 1 0 2500 5000 7500 10000 12500 15000 17500 500 1000 1500 2000 2500 3000 Mass GEN (16.56708:16.76708) Amplitude m /z Membrane Probe – pH Scan Myoglobin, 20 mM ammonium acetate pH 7.4 Second solution: 5 % acetic acid
  • 18. 1 5 4 4 .7 8 1 7 6 5 .2 7 0 500 1000 1500 2000 2500 3000 3500 4000 4500 5000 5500 250 500 750 1000 1250 1500 1750 2000 Mass GEN (01.20075:01.46766) Amplitude m /z Membrane Probe – pH Scan Second solution: 100 % water Second solution: 5 formic acid 7 2 7 .7 6 7 7 3 .0 9 8 2 4 .4 8 8 8 3 .2 8 9 5 1 .1 0 1 0 3 0 .2 5 1 1 2 3 .8 4 1 2 3 5 .9 6 1 3 7 3 .1 8 1 5 4 4 .7 9 1 7 6 5 .2 5 0 1000 2000 3000 4000 5000 6000 7000 8000 9000 10000 11000 12000 250 500 750 1000 1250 1500 1750 2000 2250 2500 Mass GEN (00.43358:00.90025) Amplitude m /z Cytochrome C 20 mM ammonium acetate pH 7.4 Decouples the upstream analytical conditions to ESI conditions
  • 19. Membrane-based Metal-ion Addition to study Metal-binding peptides
  • 20. [M+H]+ 1 [M+Zn]+ 1 [M+H]+ 1 [M+2Zn]+ 1 Online ESI Membrane-probe Studies of Metal-binding Peptides SECOND SOLUTION: WATER SECOND SOLUTION: ZnCl
  • 21. Use of Microfluidic Membrane-base HDX MS to study amyloid proteins
  • 22. Membrane-Assisted Sample Preparation Configurations: o Single Membrane Section o Double Membrane Section o Multi Membane Section
  • 23. Microfluidics Systems Properties Diffusion = fast diffusion rates Electrophoresis = high fields ….many more!!
  • 24. small cation (e.g., tris-H+) small anion (e.g., Cl-) negatively charged molecules neutral compounds or those with low µ Anodic chamberCathodic chamber Two Membrane Section Crude sample flows in Uncaptured compound flow out current
  • 26. Electrocapture Charge particle Electrocapture conditions will be fulfilled when Ve ≥ Vf Electrophoretic velocity is given by, Ve = ue x E Ve = Electrophoretic velocity ue = Electrophoresis mobility E = Electric field Positive Electrod e Negativ e Electrod e
  • 27. Flow Peek tubing Conductive membrane Captured protein 125 m Image downstream cathode junction during capture-device operation Protein captured at 30 nL spot
  • 29. small cation (e.g., tris-H+) small anion (e.g., Cl-) negatively charged molecules neutral compounds or those with low µ Anodic chamberCathodic chamber A. Capture Crude sample flows in. Uncaptured compound flow out. current
  • 30. small cation (e.g., tris-H+) small anion (e.g., Cl-) negatively charged moleculesneutral compounds or those with low µ Conditioning solution flows in Impurities are washed out Anodic chamberCathodic chamber B. Injection of a new solution current
  • 31. small cation (e.g., tris-H+) small anion (e.g., Cl-) negatively charged molecules neutral compounds or those with low µ Conditioning solution flows in Protein band is swept Anodic chamberCathodic chamber C. Release of the capture molecules
  • 32. Protein band Anodic chamber Cathodic chamber Flow Capillary electrophoresis MALDI-MS Sample Prep Microreactions Analytical Applications Separations
  • 34. ESI-MS analysis of bacteriorhodopsin in N-octyl beta D-glucopyranoside m/z 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800 1900 % 0 100 % 0 100 br-12 90 (1.741) Sm (Mn, 2x8.00); Cm (90:105) TOF MS ES+ 15.8894.64 877.63 829.62 899.60 927.61 1186.84 928.59 1070.221035.69 955.57 983.57 1086.18 1187.86 1214.89 1243.84 1334.00 1363.45 1493.66 br-7 146 (2.819) Sm (Mn, 2x8.00); Cm (144:148) TOF MS ES+ 21.2 A: 27050.99±6.66 901.62 878.73 807.65 952.74 1026.75 A26;1041.28 1084.11 1129.24 1231.75 A21 1289.10 1233.27 A20 1353.40 1293.36 1355.16 A19 1424.60 1357.31 1427.23 a b Succesful determination Bacteriorhodopsin charge states [M+nH] +n Detergent clusters BEFORE AFTER ElectroCapture Data from Dr. Leopol Ilag (Group leader) and M. Shariatgorji, (Grad.Stud.) at Stockholm University +18H+ +20H+ +22H++24H+ +26H+
  • 36. m/z 939 940 941 942 943 944 945%0 100 % 0 100 gramicidin-u 39 (1.033) Cm (14:39) TOF MS ES+ 273941.51 941.47 938.57 939.51 941.54 942.52 942.42 941.71 942.58 943.52 942.64 942.81 944.52 945.48 gramicidin-s 144 (3.216) Cm (124:144) TOF MS ES+ 316942.07 941.55 941.47 941.05 940.96 940.53939.50938.55 942.10 942.55 943.06 943.10 943.12 943.53 945.52 944.07 944.51 945.05 m/z 500 1000 1500 2000 2500 3000 3500 % 0 100 % 0 100 gramicidin-u 39 (1.033) Cm (14:39) TOF MS ES+ 5.93e3607.54 899.52 894.57 649.60 877.60 1191.40 900.55 901.55 1043.52 1335.35 1481.25 1627.17 1773.01 1871.29 2357.85 2649.45 2942.19 gramicidin-s 144 (3.216) Cm (124:144) TOF MS ES+ 3.27e3607.67 609.65 610.65 629.65 953.05 667.60 964.02 UNCLEAN SAMPLE AFTER ELECTROCAPTURE Singly-charged contaminant Doubly-charged gramicidin A Removal of detergents by ElectroCapture for ESI-MS Analysis of Peptides Gramidicin
  • 38. 20 0 Vf = Ve = ue x E E (V/cm) Time Vf > Ve = ue x E Flow C. Release of the capture molecules
  • 39. Separation Crude Sample Separation of Tryptic Peptides for Improved MALDI-MS analysis Arrows indicate peptides not seen on the unprocessed sample High voltage Low voltage
  • 41.
  • 42. Image from Kisoo Yoo, Jaesool Shim, and Prashanta Dutta Biomicrofluidics 8, 064125 (2014) Isoelectric focusing Ampholytes: Amphoteric molecules that contain both acid and basic groups, and will exist as zwitterions in a certain range of pH. Separation is based on the migration of amphoteric compounds in a electric field, until its net change of the analyte is cero. In solution isoelectric focusing, the pH gradient is created by the presence of ampholytes in the sample matrix.
  • 43. …from lab prototypes to semi-Commercial Instruments
  • 44. 1. Protein ID, abundances, their variations and modifications Bottom up - Proteomics
  • 45. Unfractionated Mean: 5.5 Std.Dev.: 2 N: 4001 Mean: 3.9 Std.Dev.: 0.5 N: 4304 Single Acidic pI-Trap fraction Acidic pI-Trap Fraction and Unfractionated Sample Histograms A pI-Trap acidic-enriched fraction always provides a higher proteome coverage than unfractionated sample
  • 46.
  • 47. Replicate 1 Replicate 2 Replicate 3 REPRODUCIBILITY
  • 49. Box plot of significantly changed focusing positions of proteins in healthy (green) and patient with Progressive Mild Cognitive Impairment (red) samples. Possible Clinical Applications
  • 50.
  • 52.
  • 53. pI-Trap - AD Scanner
  • 54. 0 0.02 0.04 0.06 0.08 0.1 0.12 0 100 200 300 400 500 600 700 800 900 1000 OpticalDensity,arb.units Channel nr Hemoglobin (Bovine) pI 6.8 Cytochorme C (Horse heart) pI 10 UV detector ActiPix D200 on pI-Trap 1 h focusing Elution at 2 µL/min 5 6 7 8 9 10 11 12 pI
  • 56. 0 200 400 600 800 1000 1200 1400 1600 1800 2000 1 2 3 4 5 6 7 8 Replicates pI Trap Fractions Num. Proteins Num. of Combined pI Trap Fractions or Replicates Proteome Coverage: pITrap Fractionation vs Replicates (8 pITrap fractions versus octuplicate. All data 1 % FDR) ORBITRAP XL
  • 57. Multijunction Microfluidic System Mohammad Pirmoradian et.al. Submitted Anal.Chem
  • 59. Box plot of significantly changed focusing positions of proteins in healthy (green) and patient with Progressive Mild Cognitive Impairment (red) samples. Clinical Applications
  • 60. Acknowledgments Prof. Roman Zubarev Dep. Medical biochemistry and Biophysics Thorleif Lavold, CEO