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DNA Replication
Watson and Crick 1953 article in Nature
Double helix structure of DNA “ It has not escaped our notice that the specific pairing we have postulated immediately suggests a possible copying mechanism for the genetic material.” Watson & Crick
Directionality of DNA ,[object Object],[object Object],OH CH 2 O 4  5  3  2  1  PO 4 N base ribose nucleotide
The DNA backbone ,[object Object],[object Object],[object Object],OH O 3  PO 4 base CH 2 O base O P O C O – O CH 2 1  2  4  5  1  2  3  3  4  5  5 
Anti-parallel strands ,[object Object],[object Object],[object Object],3  5  5  3 
Bonding in DNA … . strong  or  weak  bonds? How do the bonds fit the mechanism for copying DNA?  3  5  3  5  covalent phosphodiester bonds hydrogen bonds
Base pairing in DNA ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Copying DNA ,[object Object],[object Object],[object Object]
DNA Replication  ,[object Object]
DNA-pol of eukaryotes DNA-pol   :  elongation  DNA-pol III DNA-pol   :  initiate replication and synthesize primers DnaG,  primase DNA-pol   :  replication with low fidelity DNA-pol   :  polymerization in mitochondria  DNA-pol   :  proofreading and filling gap DNA-pol I repairing
Replication: 1st step ,[object Object],[object Object],[object Object],[object Object],single-stranded binding proteins replication fork helicase
Replication: 2nd step DNA Polymerase III ,[object Object],[object Object],[object Object]
Energy of Replication ,[object Object],energy ATP GTP TTP CTP ADP AMP GMP TMP CMP modified nucleotide energy We come with our  own energy !   And we leave behind a nucleotide !
Energy of Replication ,[object Object],[object Object],[object Object],[object Object],[object Object],ATP GTP TTP CTP
[object Object],[object Object],[object Object],[object Object]
 
Leading & Lagging strands ,[object Object],[object Object],Leading strand Lagging strand Okazaki fragments ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],DNA polymerase III   growing  replication fork 5  5  5  5  3  3  3  5  3  5  3  3  ligase Okazaki 3  5 
Replication fork / Replication bubble leading strand lagging strand leading strand leading strand lagging strand DNA polymerase III 5  3  5  3  5  3  3  5  5  3  5  3  5  3  5  3  growing  replication fork growing  replication fork 5  5  5  5  5  3  3  5  5  5  3 
Starting DNA synthesis: RNA primers ,[object Object],[object Object],[object Object],[object Object],[object Object],growing  replication fork primase RNA DNA polymerase III 5  5  5  3  3  3  5  3  5  3  5  3 
Replacing RNA primers with DNA ,[object Object],[object Object],But DNA polymerase I still can only build onto 3   end of an  existing DNA strand growing  replication fork DNA polymerase I RNA 5  5  5  5  3  3  3  3  ligase
DNA polymerases ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],DNA polymerase III  enzyme Arthur Kornberg 1959 Roger Kornberg 2006
Editing & proofreading DNA ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Fast & accurate! ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
What does it really look like? 1 2 3 4
Characteristics of replication ,[object Object],[object Object],[object Object],[object Object]
[object Object]
Semiconservative replication Half of the parental DNA molecule is conserved in each new double helix, paired with a newly synthesized complementary strand. This is called semiconservative replication
Semiconservative replication
Experiment of DNA semiconservative replication
[object Object],Significance
[object Object],[object Object],[object Object]
Replication fork
[object Object],[object Object],[object Object]
Bidirectional replication
Replication of prokaryotes  The replication process starts from the origin, and proceeds in two opposite directions.  It is named     replication.
[object Object],[object Object],[object Object]
origins of DNA replication (every ~150 kb)
[object Object],The daughter strands on two template  strands are synthesized differently since the replication process obeys the principle that  DNA is synthesized from the 5´ end to the 3´end .
On the template having the 3´- end,  the daughter strand is synthesized continuously in the 5’-3’ direction.  This strand is referred to as  the  leading strand .  Leading strand
Semi-continuous replication
[object Object],[object Object],Okazaki fragments
Continuous synthesis of the leading strand and discontinuous synthesis of the lagging strand represent a unique feature of DNA replication.  It is referred to as  the   semi-continuous replication .  Semi-continuous replication
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Dna replication

  • 2. Watson and Crick 1953 article in Nature
  • 3. Double helix structure of DNA “ It has not escaped our notice that the specific pairing we have postulated immediately suggests a possible copying mechanism for the genetic material.” Watson & Crick
  • 4.
  • 5.
  • 6.
  • 7. Bonding in DNA … . strong or weak bonds? How do the bonds fit the mechanism for copying DNA? 3  5  3  5  covalent phosphodiester bonds hydrogen bonds
  • 8.
  • 9.
  • 10.
  • 11. DNA-pol of eukaryotes DNA-pol  : elongation DNA-pol III DNA-pol  : initiate replication and synthesize primers DnaG, primase DNA-pol  : replication with low fidelity DNA-pol  : polymerization in mitochondria DNA-pol  : proofreading and filling gap DNA-pol I repairing
  • 12.
  • 13.
  • 14.
  • 15.
  • 16.
  • 17.  
  • 18.
  • 19. Replication fork / Replication bubble leading strand lagging strand leading strand leading strand lagging strand DNA polymerase III 5  3  5  3  5  3  3  5  5  3  5  3  5  3  5  3  growing replication fork growing replication fork 5  5  5  5  5  3  3  5  5  5  3 
  • 20.
  • 21.
  • 22.
  • 23.
  • 24.
  • 25. What does it really look like? 1 2 3 4
  • 26.
  • 27.
  • 28. Semiconservative replication Half of the parental DNA molecule is conserved in each new double helix, paired with a newly synthesized complementary strand. This is called semiconservative replication
  • 30. Experiment of DNA semiconservative replication
  • 31.
  • 32.
  • 34.
  • 36. Replication of prokaryotes The replication process starts from the origin, and proceeds in two opposite directions. It is named  replication.
  • 37.
  • 38. origins of DNA replication (every ~150 kb)
  • 39.
  • 40. On the template having the 3´- end, the daughter strand is synthesized continuously in the 5’-3’ direction. This strand is referred to as the leading strand . Leading strand
  • 42.
  • 43. Continuous synthesis of the leading strand and discontinuous synthesis of the lagging strand represent a unique feature of DNA replication. It is referred to as the semi-continuous replication . Semi-continuous replication

Editor's Notes

  1. Enzymes more than a dozen enzymes & other proteins participate in DNA replication
  2. In 1953, Kornberg was appointed head of the Department of Microbiology in the Washington University School of Medicine in St. Louis. It was here that he isolated DNA polymerase I and showed that life (DNA) can be made in a test tube. In 1959, Kornberg shared the Nobel Prize for Physiology or Medicine with Severo Ochoa — Kornberg for the enzymatic synthesis of DNA, Ochoa for the enzymatic synthesis of RNA.