Kunnen we een tomaat van 400 jaar oud proevenRutger Vos
Slides voor mijn college aan de Museum Jeugd Universiteit (http://museumjeugduniversiteit.nl) in Museum Boerhaave (http://www.museumboerhaave.nl), 19 october 2014.
Full title: "The tree of life as central unifying artefact for the integration of phylogenetic knowledge." This is a brief intro presentation for the 2011 BioHackathon in Kyoto, Japan. I describe a simple workflow built around semantic web services that add metadata to a backbone of the Tree of Life. The take home message is that such a structure can be a useful anchor to which knowledge can be attached, but that there are still issues with standards definition and adoption.
NeXML is an exchange standard for representing phyloinformatic data — inspired by the commonly used NEXUS format, but more robust and easier to process.
How to make a monkey: functional adaptation in the primate genomeRutger Vos
Presentation to the "Workshop on Parallel and Distributed Processing of Large Genome Data", 22 February 2011, DBCLS, Tokyo (http://mlab.cb.k.u-tokyo.ac.jp/en/events/lgd/). The presentation describes the methodological issues surrounding the design of a workflow for assigning orthology among primate genomes, testing them for evidence of selection and interpreting the results using the Gene Ontology.
Modeling the biosphere: the natural historian's perspectiveRutger Vos
Natural history collections of specimens are a rich source of data for discovering the patterns of biodiversity in space and time and for furthering our understanding of the underlying processes that generate these patterns. Modeling the biosphere in this manner can help address global challenges in relation to climate change, food security, emerging disease and conservation. (Talk to the 3rd annual eScience symposium, 8 October 2015).
Taxonomic classification of digitized specimens using machine learningRutger Vos
Progress in the development of neural networks that classify images of slipper orchids and Javanese butterflies. Talk to LEBEN at Leiden University's biology department, IBL, 20 September 2016.
Toward Semantic Representation of Science in Electronic Laboratory Notebooks ...Stuart Chalk
An electronic laboratory Notebook (ELN) can be characterized as a system that allows scientists to capture the data and resources used in performing scientific experiments. This allows users to easily organize and find their data however, little information about the scientific process is recorded.
In this paper we highlight the current status of progress toward semantic representation of science in ELNs.
Kunnen we een tomaat van 400 jaar oud proevenRutger Vos
Slides voor mijn college aan de Museum Jeugd Universiteit (http://museumjeugduniversiteit.nl) in Museum Boerhaave (http://www.museumboerhaave.nl), 19 october 2014.
Full title: "The tree of life as central unifying artefact for the integration of phylogenetic knowledge." This is a brief intro presentation for the 2011 BioHackathon in Kyoto, Japan. I describe a simple workflow built around semantic web services that add metadata to a backbone of the Tree of Life. The take home message is that such a structure can be a useful anchor to which knowledge can be attached, but that there are still issues with standards definition and adoption.
NeXML is an exchange standard for representing phyloinformatic data — inspired by the commonly used NEXUS format, but more robust and easier to process.
How to make a monkey: functional adaptation in the primate genomeRutger Vos
Presentation to the "Workshop on Parallel and Distributed Processing of Large Genome Data", 22 February 2011, DBCLS, Tokyo (http://mlab.cb.k.u-tokyo.ac.jp/en/events/lgd/). The presentation describes the methodological issues surrounding the design of a workflow for assigning orthology among primate genomes, testing them for evidence of selection and interpreting the results using the Gene Ontology.
Modeling the biosphere: the natural historian's perspectiveRutger Vos
Natural history collections of specimens are a rich source of data for discovering the patterns of biodiversity in space and time and for furthering our understanding of the underlying processes that generate these patterns. Modeling the biosphere in this manner can help address global challenges in relation to climate change, food security, emerging disease and conservation. (Talk to the 3rd annual eScience symposium, 8 October 2015).
Taxonomic classification of digitized specimens using machine learningRutger Vos
Progress in the development of neural networks that classify images of slipper orchids and Javanese butterflies. Talk to LEBEN at Leiden University's biology department, IBL, 20 September 2016.
Toward Semantic Representation of Science in Electronic Laboratory Notebooks ...Stuart Chalk
An electronic laboratory Notebook (ELN) can be characterized as a system that allows scientists to capture the data and resources used in performing scientific experiments. This allows users to easily organize and find their data however, little information about the scientific process is recorded.
In this paper we highlight the current status of progress toward semantic representation of science in ELNs.
Matching and merging anonymous terms from web sourcesIJwest
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Eureka Research Workbench: A Semantic Approach to an Open Source Electroni...Stuart Chalk
Scientists are looking for ways to leverage web 2.0 technologies in the research laboratory and as a consequence a number of approaches to web-based electronic notebooks are being evaluated. In this presentation I discuss the Eureka Research Workbench, an electronic laboratory notebook built on semantic technology and XML. Using this approach the context of the information recorded in the laboratory can be captured and searched along with the data itself. A discussion of the current system is presented along with the next planned development of the framework and long-term plans relative to linked open data. Presented at the 246th American Chemical Society Meeting in Indianapolis, IN, USA on September 12th, 2013.
Semantics in Financial Services -David NewmanPeter Berger
David Newman serves as a Senior Architect in the Enterprise Architecture group at Wells Fargo Bank. He has been following semantic technology for the last 3 years; and has developed several business ontologies. He has been instrumental in thought leadership at Wells Fargo on the application of Semantic Technology and is a representative of the Financial Services Technology Consortium (FSTC)on the W3C SPARQL Working Group.
Uitleg OAI-ORE en de daaraan gerelateerde visie van Thomas Place door Thomas Place. Deze presentatie is gegeven tijdens de Fedora Op Klompen dag 19 juni 2008.
A Generic Scientific Data Model and Ontology for Representation of Chemical DataStuart Chalk
The current movement toward openness and sharing of data is likely to have a profound effect on the speed of scientific research and the complexity of questions we can answer. However, a fundamental problem with currently available datasets (and their metadata) is heterogeneity in terms of implementation, organization, and representation.
To address this issue we have developed a generic scientific data model (SDM) to organize and annotate raw and processed data, and the associated metadata. This paper will present the current status of the SDM, implementation of the SDM in JSON-LD, and the associated scientific data model ontology (SDMO). Example usage of the SDM to store data from a variety of sources with be discussed along with future plans for the work.
Towards a Query Rewriting Algorithm Over Proteomics XML ResourcesCSCJournals
Querying and sharing Web proteomics data is not an easy task. Given that, several data sources can be used to answer the same sub-goals in the Global query, it is obvious that we can have many candidates rewritings. The user-query is formulated using Concepts and Properties related to Proteomics research (Domain Ontology). Semantic mappings describe the contents of underlying sources. In this paper, we propose a characterization of query rewriting problem using semantic mappings as an associated hypergraph. Hence, the generation of candidates’ rewritings can be formulated as the discovery of minimal Transversals of an hypergraph. We exploit and adapt algorithms available in Hypergraph Theory to find all candidates rewritings from a query answering problem. Then, in future work, some relevant criteria could help to determine optimal and qualitative rewritings, according to user needs, and sources performances.
The benefits of using Crossref metadata for libraries and scientists - Crossr...Crossref
Najko Jahn from Göttingen State and University Library presents on the benefits of using Crossref metadata for libraries and scientists. Presented at Crossref LIVE Hannover, June 27th 2018.
Natural history research as a replicable data scienceRutger Vos
Keynote presentation to the 2017 GARR conference, 17 November 2017, Venice, Italy. Introduction to natural history data types and analysis examples. Discussion of current practices in promoting reproducibility.
Species delimitation - species limits and character evolutionRutger Vos
Lecture slides for the program orientation Evolutionary Biology at the Institute of Biology Leiden, the Netherlands. Thursday, September 7th, 2017.
Lecture notes are here: https://docs.google.com/document/d/e/2PACX-1vRIv5mKK1fjBby--u97emC7hrqXUbxFQZe63P1FpguuhHLG6xykbwXKeKXCUE5W-LSpakXYCI621xCK/pub
Onderzoek bio-informatica Naturalis. Raad voor Cultuur 2017.Rutger Vos
Presentatie voor leden van de Raad voor Cultuur, 27 juni 2017, Naturalis. Geeft een overzicht van de onderzoeksactiviteiten aan collectiemateriaal met een bio-informatische component.
Presentation about image recognition applied to digitized specimen of the Van Groenendael Krijger collection of Javanese Papilionid butterflies. Occasion: BrainFood, 12 April 2017, Naturalis, Leiden, the Netherlands.
Self-Updating Platform for the Estimation of Rates of Speciation, Migration A...Rutger Vos
Slides for my lightning talk on the SUPERSMART platform to the SSB/SSE/ASN annual meeting, Austin, TX, USA. SSB Spotlight Session: "Next generation phylogenetic inference 2". Monday, June 20th 2016, 3:20PM, Ballroom A.
Hoe leer je een robot soorten te herkennen?Rutger Vos
Guest lecture slides for the bioinformatics student union (Exon) at the university of applied sciences, Leiden, the Netherlands. In this lecture I present the results of a research project at Naturalis Biodiversity Center to identify slipper orchids using image recognition techniques.
PhyloTastic: names-based phyloinformatic data integrationRutger Vos
Lightning talk to the 2013 TDWG conference symposium on phyloinformatics, brief report on PhyloTastic with special attention to the taxonomic name reconciliation service TaxoSaurus.
Course slides for computational phyloinformatics, an annual course organized by NESCent in collaboration with hosting organizations across the world. I am the teacher of the Perl section of the course, these are the slides I presented in 2010 at BGI, Shenzhen, PRC.
Builder.ai Founder Sachin Dev Duggal's Strategic Approach to Create an Innova...Ramesh Iyer
In today's fast-changing business world, Companies that adapt and embrace new ideas often need help to keep up with the competition. However, fostering a culture of innovation takes much work. It takes vision, leadership and willingness to take risks in the right proportion. Sachin Dev Duggal, co-founder of Builder.ai, has perfected the art of this balance, creating a company culture where creativity and growth are nurtured at each stage.
GraphRAG is All You need? LLM & Knowledge GraphGuy Korland
Guy Korland, CEO and Co-founder of FalkorDB, will review two articles on the integration of language models with knowledge graphs.
1. Unifying Large Language Models and Knowledge Graphs: A Roadmap.
https://arxiv.org/abs/2306.08302
2. Microsoft Research's GraphRAG paper and a review paper on various uses of knowledge graphs:
https://www.microsoft.com/en-us/research/blog/graphrag-unlocking-llm-discovery-on-narrative-private-data/
UiPath Test Automation using UiPath Test Suite series, part 4DianaGray10
Welcome to UiPath Test Automation using UiPath Test Suite series part 4. In this session, we will cover Test Manager overview along with SAP heatmap.
The UiPath Test Manager overview with SAP heatmap webinar offers a concise yet comprehensive exploration of the role of a Test Manager within SAP environments, coupled with the utilization of heatmaps for effective testing strategies.
Participants will gain insights into the responsibilities, challenges, and best practices associated with test management in SAP projects. Additionally, the webinar delves into the significance of heatmaps as a visual aid for identifying testing priorities, areas of risk, and resource allocation within SAP landscapes. Through this session, attendees can expect to enhance their understanding of test management principles while learning practical approaches to optimize testing processes in SAP environments using heatmap visualization techniques
What will you get from this session?
1. Insights into SAP testing best practices
2. Heatmap utilization for testing
3. Optimization of testing processes
4. Demo
Topics covered:
Execution from the test manager
Orchestrator execution result
Defect reporting
SAP heatmap example with demo
Speaker:
Deepak Rai, Automation Practice Lead, Boundaryless Group and UiPath MVP
Elevating Tactical DDD Patterns Through Object CalisthenicsDorra BARTAGUIZ
After immersing yourself in the blue book and its red counterpart, attending DDD-focused conferences, and applying tactical patterns, you're left with a crucial question: How do I ensure my design is effective? Tactical patterns within Domain-Driven Design (DDD) serve as guiding principles for creating clear and manageable domain models. However, achieving success with these patterns requires additional guidance. Interestingly, we've observed that a set of constraints initially designed for training purposes remarkably aligns with effective pattern implementation, offering a more ‘mechanical’ approach. Let's explore together how Object Calisthenics can elevate the design of your tactical DDD patterns, offering concrete help for those venturing into DDD for the first time!
Connector Corner: Automate dynamic content and events by pushing a buttonDianaGray10
Here is something new! In our next Connector Corner webinar, we will demonstrate how you can use a single workflow to:
Create a campaign using Mailchimp with merge tags/fields
Send an interactive Slack channel message (using buttons)
Have the message received by managers and peers along with a test email for review
But there’s more:
In a second workflow supporting the same use case, you’ll see:
Your campaign sent to target colleagues for approval
If the “Approve” button is clicked, a Jira/Zendesk ticket is created for the marketing design team
But—if the “Reject” button is pushed, colleagues will be alerted via Slack message
Join us to learn more about this new, human-in-the-loop capability, brought to you by Integration Service connectors.
And...
Speakers:
Akshay Agnihotri, Product Manager
Charlie Greenberg, Host
Epistemic Interaction - tuning interfaces to provide information for AI supportAlan Dix
Paper presented at SYNERGY workshop at AVI 2024, Genoa, Italy. 3rd June 2024
https://alandix.com/academic/papers/synergy2024-epistemic/
As machine learning integrates deeper into human-computer interactions, the concept of epistemic interaction emerges, aiming to refine these interactions to enhance system adaptability. This approach encourages minor, intentional adjustments in user behaviour to enrich the data available for system learning. This paper introduces epistemic interaction within the context of human-system communication, illustrating how deliberate interaction design can improve system understanding and adaptation. Through concrete examples, we demonstrate the potential of epistemic interaction to significantly advance human-computer interaction by leveraging intuitive human communication strategies to inform system design and functionality, offering a novel pathway for enriching user-system engagements.
Generating a custom Ruby SDK for your web service or Rails API using Smithyg2nightmarescribd
Have you ever wanted a Ruby client API to communicate with your web service? Smithy is a protocol-agnostic language for defining services and SDKs. Smithy Ruby is an implementation of Smithy that generates a Ruby SDK using a Smithy model. In this talk, we will explore Smithy and Smithy Ruby to learn how to generate custom feature-rich SDKs that can communicate with any web service, such as a Rails JSON API.
Essentials of Automations: Optimizing FME Workflows with ParametersSafe Software
Are you looking to streamline your workflows and boost your projects’ efficiency? Do you find yourself searching for ways to add flexibility and control over your FME workflows? If so, you’re in the right place.
Join us for an insightful dive into the world of FME parameters, a critical element in optimizing workflow efficiency. This webinar marks the beginning of our three-part “Essentials of Automation” series. This first webinar is designed to equip you with the knowledge and skills to utilize parameters effectively: enhancing the flexibility, maintainability, and user control of your FME projects.
Here’s what you’ll gain:
- Essentials of FME Parameters: Understand the pivotal role of parameters, including Reader/Writer, Transformer, User, and FME Flow categories. Discover how they are the key to unlocking automation and optimization within your workflows.
- Practical Applications in FME Form: Delve into key user parameter types including choice, connections, and file URLs. Allow users to control how a workflow runs, making your workflows more reusable. Learn to import values and deliver the best user experience for your workflows while enhancing accuracy.
- Optimization Strategies in FME Flow: Explore the creation and strategic deployment of parameters in FME Flow, including the use of deployment and geometry parameters, to maximize workflow efficiency.
- Pro Tips for Success: Gain insights on parameterizing connections and leveraging new features like Conditional Visibility for clarity and simplicity.
We’ll wrap up with a glimpse into future webinars, followed by a Q&A session to address your specific questions surrounding this topic.
Don’t miss this opportunity to elevate your FME expertise and drive your projects to new heights of efficiency.
State of ICS and IoT Cyber Threat Landscape Report 2024 previewPrayukth K V
The IoT and OT threat landscape report has been prepared by the Threat Research Team at Sectrio using data from Sectrio, cyber threat intelligence farming facilities spread across over 85 cities around the world. In addition, Sectrio also runs AI-based advanced threat and payload engagement facilities that serve as sinks to attract and engage sophisticated threat actors, and newer malware including new variants and latent threats that are at an earlier stage of development.
The latest edition of the OT/ICS and IoT security Threat Landscape Report 2024 also covers:
State of global ICS asset and network exposure
Sectoral targets and attacks as well as the cost of ransom
Global APT activity, AI usage, actor and tactic profiles, and implications
Rise in volumes of AI-powered cyberattacks
Major cyber events in 2024
Malware and malicious payload trends
Cyberattack types and targets
Vulnerability exploit attempts on CVEs
Attacks on counties – USA
Expansion of bot farms – how, where, and why
In-depth analysis of the cyber threat landscape across North America, South America, Europe, APAC, and the Middle East
Why are attacks on smart factories rising?
Cyber risk predictions
Axis of attacks – Europe
Systemic attacks in the Middle East
Download the full report from here:
https://sectrio.com/resources/ot-threat-landscape-reports/sectrio-releases-ot-ics-and-iot-security-threat-landscape-report-2024/
Smart TV Buyer Insights Survey 2024 by 91mobiles.pdf91mobiles
91mobiles recently conducted a Smart TV Buyer Insights Survey in which we asked over 3,000 respondents about the TV they own, aspects they look at on a new TV, and their TV buying preferences.
Neuro-symbolic is not enough, we need neuro-*semantic*Frank van Harmelen
Neuro-symbolic (NeSy) AI is on the rise. However, simply machine learning on just any symbolic structure is not sufficient to really harvest the gains of NeSy. These will only be gained when the symbolic structures have an actual semantics. I give an operational definition of semantics as “predictable inference”.
All of this illustrated with link prediction over knowledge graphs, but the argument is general.
Dev Dives: Train smarter, not harder – active learning and UiPath LLMs for do...UiPathCommunity
💥 Speed, accuracy, and scaling – discover the superpowers of GenAI in action with UiPath Document Understanding and Communications Mining™:
See how to accelerate model training and optimize model performance with active learning
Learn about the latest enhancements to out-of-the-box document processing – with little to no training required
Get an exclusive demo of the new family of UiPath LLMs – GenAI models specialized for processing different types of documents and messages
This is a hands-on session specifically designed for automation developers and AI enthusiasts seeking to enhance their knowledge in leveraging the latest intelligent document processing capabilities offered by UiPath.
Speakers:
👨🏫 Andras Palfi, Senior Product Manager, UiPath
👩🏫 Lenka Dulovicova, Product Program Manager, UiPath
Encryption in Microsoft 365 - ExpertsLive Netherlands 2024Albert Hoitingh
In this session I delve into the encryption technology used in Microsoft 365 and Microsoft Purview. Including the concepts of Customer Key and Double Key Encryption.
Slack (or Teams) Automation for Bonterra Impact Management (fka Social Soluti...Jeffrey Haguewood
Sidekick Solutions uses Bonterra Impact Management (fka Social Solutions Apricot) and automation solutions to integrate data for business workflows.
We believe integration and automation are essential to user experience and the promise of efficient work through technology. Automation is the critical ingredient to realizing that full vision. We develop integration products and services for Bonterra Case Management software to support the deployment of automations for a variety of use cases.
This video focuses on the notifications, alerts, and approval requests using Slack for Bonterra Impact Management. The solutions covered in this webinar can also be deployed for Microsoft Teams.
Interested in deploying notification automations for Bonterra Impact Management? Contact us at sales@sidekicksolutionsllc.com to discuss next steps.
AI for Every Business: Unlocking Your Product's Universal Potential by VP of ...
TreeBASE CIPRES
1. Interoperability among phylogenetic data resources Rutger Vos University of British Columbia Recent additions to the TreeBASE2 architecture
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6. PhyloWS URL API http://purl.org phylo treebase phylows study/TB2:S1787 / / / / Permanent URL resolver domain Subdomain for any phylogenetic resource Subdomain for TreeBASE Subdomain for PhyloWS API Object ID
Phylogenetic web resources are often closed data silos, i.e.applications that do not interact with other applications or information systems. Until recently this has also been the case forTreeBASE2's development: it has been constructed such that data can only be accessed through the browser interface, and only be downloaded in NEXUS format. To make TreeBASE2 a resource that is visited more often in the research cycle then just when research results need to be deposited prior to publication, this situation has had to change. To this end, the development team has started to incorporate the tools and practices created by the EvoInfo working group( http: //evoinfo . nescent .org ) in TreeBASE2's architecture. Among these are: "cool URIs" to identify and de-reference phylogenetic data objects; a PhyloWS-compliant web service interface allowing programmatic access to TreeBASE2 data; database searching using Common Query Language constructs; data export in NeXML and RDF. I will describe what the implications of each of these are, and what additional functionality we expect to add in the near future.
![Introducing TreeBASE3.0 ,[object Object],[object Object]](data:image/gif;base64,R0lGODlhAQABAIAAAAAAAP///yH5BAEAAAAALAAAAAABAAEAAAIBRAA7)