The Neuroinformatics community in OpenAIRE Connect (Presentation by Sorina Pop at DI4R2018)

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"The Neuroinformatics community in OpenAIRE Connect" Presentation by Sorina Pop from CNRS at the Digital Infrastructures Conference 2018, Lisbon. OpenAIRE Session: OpenAIRE services for Research Communities (Oct. 11, 2018)

Science

@openaire_eu
The Neuroinformatics
community in OpenAire Connect
Sorina Pop, Axel Bonnet, Camille Maumet, Michael Kain,
Christian Barillot, Tristan Glatard
DI4R | Lisbon| 9 - 11 October 2018

• Represented by members of the France Life Imaging (FLI)
collaboration
• Focus on e-infrastructure services to enable
interoperability between in-vivo image acquisition
platforms at National and international level (EGI)
• Use OpenAIRE-Connect services and promote their
adoption across neuroinformatics scientists
• Generate and share packages of research artefacts
Neuroinformatics community

Dashboard for Research Communities
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fund
Harvest Harmonize
Deduplicate Inference
Repositories of publications, datasets, projects, methods, packages
Research Community Service
Research
Community
Operator
Researchers
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• Deposit (DOI)
• Claim
• Stats: research impact & OA
• Manage users
• Configure stats
• Configure inference
fund
Crédits: OpenAire Connect

SHAring NeurOImaging Resources
An open source web platform for neuro-imagingDownload
stored data
Support for
processed
(derived) data
Online
Visualization of
stored data
Data de-identification
and patient privacy
Download
Processed data
Support for multi-
centric research
studies
User access
control
Support for clinical and
neuropsychological scores
Web
Portal
Collect neuroimaging data from several
sources :
• Dicom CD / DVD
• PACS (via Dicom Q& R)
• Nifti / Analyze image files
a model build on an formal
ontology to
• Enhance data integrity
• Structure the data
• Manage data provenance
• Facilitate collaborative research
• Pool resources

Web portal
Users
1000+ registered users in October 2018
44 publications since 2011
Neuro-image analysisCancer therapy simulation
Prostate radiotherapy plan simulated
with GATE(L. Grevillot and D. Sarrut)
Image simulation
Echocardiography simulated with
FIELD-II (O. Bernard et al)
Modeling and optimization of
distributed computing systems
Acceleration yielded by non-clairvoyant
task replication (R. Ferreira da Silva et al)
Brain tissue segmentation
with Freesurfer
Scientific applications
Infrastructure
Supported by EGI Infrastructure
Uses biomed VO (~65 sites in Europe and beyond)
230 cumulated CPU years utilized by VIP applications in 1 year
DIRAC
France-Grilles
Application as a service
File transfer to/from grid
Virtual Imaging Platform (VIP)
https://vip.creatis.insa-lyon.fr

• Describe, publish, integrate and
execute command-line applications
across platforms
– facilitate application porting
– import and exchange of applications
– open and reproducible science
• Versatile JSON format to describe the
command-line, inputs and outputs
• Use of Linux containers to facilitate
application installation and sharing
• https://github.com/boutiques
Boutiques
Neuroinformatics software descriptors published to
Zenodo with Boutiques

• Become providers/repositories from which OpenAire
Connect can harvest software (Boutiques pipelines,
Dockers, etc) and data
• Upload such products to Zenodo (and get a DOI)
• Boutiques implements “bosh publish” to Zenodo
with support for tags
• Enable interoperability and reproducibility
VIP and Shanoir CAN

• Gather and search for all kind of research artefacts
from the neuroinformatics community: literature,
datasets, software
• Link datasets and software to articles
• Publish artefacts automatically and directly from data
storage and computing platforms
• Enable open and reproducible science
Conclusion and perspectives

Thank you!
Sorina POP
sorina.pop@creatis.insa-lyon.fr

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Recently uploaded

The binding of cosmological structures by massless topological defects

Sérgio Sacani

Assuming spherical symmetry and weak field, it is shown that if one solves the Poisson equation or the Einstein field equations sourced by a topological defect, i.e. a singularity of a very specific form, the result is a localized gravitational field capable of driving flat rotation (i.e. Keplerian circular orbits at a constant speed for all radii) of test masses on a thin spherical shell without any underlying mass. Moreover, a large-scale structure which exploits this solution by assembling concentrically a number of such topological defects can establish a flat stellar or galactic rotation curve, and can also deflect light in the same manner as an equipotential (isothermal) sphere. Thus, the need for dark matter or modified gravity theory is mitigated, at least in part.

20240520 Planning a Circuit Simulator in JavaScript.pptx

Sharon Liu

Applied Science: Thermodynamics, Laws & Methodology.pdf

University of Hertfordshire

When I was asked to give a companion lecture in support of ‘The Philosophy of Science’ (https://shorturl.at/4pUXz) I decided not to walk through the detail of the many methodologies in order of use. Instead, I chose to employ a long standing, and ongoing, scientific development as an exemplar. And so, I chose the ever evolving story of Thermodynamics as a scientific investigation at its best. Conducted over a period of >200 years, Thermodynamics R&D, and application, benefitted from the highest levels of professionalism, collaboration, and technical thoroughness. New layers of application, methodology, and practice were made possible by the progressive advance of technology. In turn, this has seen measurement and modelling accuracy continually improved at a micro and macro level. Perhaps most importantly, Thermodynamics rapidly became a primary tool in the advance of applied science/engineering/technology, spanning micro-tech, to aerospace and cosmology. I can think of no better a story to illustrate the breadth of scientific methodologies and applications at their best.

Immersive Learning That Works: Research Grounding and Paths Forward

Leonel Morgado

We will metaverse into the essence of immersive learning, into its three dimensions and conceptual models. This approach encompasses elements from teaching methodologies to social involvement, through organizational concerns and technologies. Challenging the perception of learning as knowledge transfer, we introduce a 'Uses, Practices & Strategies' model operationalized by the 'Immersive Learning Brain' and ‘Immersion Cube’ frameworks. This approach offers a comprehensive guide through the intricacies of immersive educational experiences and spotlighting research frontiers, along the immersion dimensions of system, narrative, and agency. Our discourse extends to stakeholders beyond the academic sphere, addressing the interests of technologists, instructional designers, and policymakers. We span various contexts, from formal education to organizational transformation to the new horizon of an AI-pervasive society. This keynote aims to unite the iLRN community in a collaborative journey towards a future where immersive learning research and practice coalesce, paving the way for innovative educational research and practice landscapes.

Travis Hills' Endeavors in Minnesota: Fostering Environmental and Economic Pr...

Travis Hills MN

Travis Hills of Minnesota developed a method to convert waste into high-value dry fertilizer, significantly enriching soil quality. By providing farmers with a valuable resource derived from waste, Travis Hills helps enhance farm profitability while promoting environmental stewardship. Travis Hills' sustainable practices lead to cost savings and increased revenue for farmers by improving resource efficiency and reducing waste.

原版制作(carleton毕业证书)卡尔顿大学毕业证硕士文凭原版一模一样

yqqaatn0

原版纸张【微信：741003700 】【(carleton毕业证书)卡尔顿大学毕业证】【微信：741003700 】学位证，留信认证（真实可查，永久存档）offer、雅思、外壳等材料/诚信可靠,可直接看成品样本，帮您解决无法毕业带来的各种难题！外壳，原版制作，诚信可靠，可直接看成品样本。行业标杆！精益求精，诚心合作，真诚制作！多年品质 ,按需精细制作，24小时接单,全套进口原装设备。十五年致力于帮助留学生解决难题，包您满意。本公司拥有海外各大学样板无数，能完美还原海外各大学 Bachelor Diploma degree, Master Degree Diploma 1:1完美还原海外各大学毕业材料上的工艺：水印，阴影底纹，钢印LOGO烫金烫银，LOGO烫金烫银复合重叠。文字图案浮雕、激光镭射、紫外荧光、温感、复印防伪等防伪工艺。材料咨询办理、认证咨询办理请加学历顾问Q/微741003700 留信网认证的作用: 1:该专业认证可证明留学生真实身份 2:同时对留学生所学专业登记给予评定 3:国家专业人才认证中心颁发入库证书 4:这个认证书并且可以归档倒地方 5:凡事获得留信网入网的信息将会逐步更新到个人身份内，将在公安局网内查询个人身份证信息后，同步读取人才网入库信息 6:个人职称评审加20分 7:个人信誉贷款加10分 8:在国家人才网主办的国家网络招聘大会中纳入资料，供国家高端企业选择人才

The use of Nauplii and metanauplii artemia in aquaculture (brine shrimp).pptx

MAGOTI ERNEST

Although Artemia has been known to man for centuries, its use as a food for the culture of larval organisms apparently began only in the 1930s, when several investigators found that it made an excellent food for newly hatched fish larvae (Litvinenko et al., 2023). As aquaculture developed in the 1960s and ‘70s, the use of Artemia also became more widespread, due both to its convenience and to its nutritional value for larval organisms (Arenas-Pardo et al., 2024). The fact that Artemia dormant cysts can be stored for long periods in cans, and then used as an off-the-shelf food requiring only 24 h of incubation makes them the most convenient, least labor-intensive, live food available for aquaculture (Sorgeloos & Roubach, 2021). The nutritional value of Artemia, especially for marine organisms, is not constant, but varies both geographically and temporally. During the last decade, however, both the causes of Artemia nutritional variability and methods to improve poorquality Artemia have been identified (Loufi et al., 2024). Brine shrimp (Artemia spp.) are used in marine aquaculture worldwide. Annually, more than 2,000 metric tons of dry cysts are used for cultivation of fish, crustacean, and shellfish larva. Brine shrimp are important to aquaculture because newly hatched brine shrimp nauplii (larvae) provide a food source for many fish fry (Mozanzadeh et al., 2021). Culture and harvesting of brine shrimp eggs represents another aspect of the aquaculture industry. Nauplii and metanauplii of Artemia, commonly known as brine shrimp, play a crucial role in aquaculture due to their nutritional value and suitability as live feed for many aquatic species, particularly in larval stages (Sorgeloos & Roubach, 2021).

EWOCS-I: The catalog of X-ray sources in Westerlund 1 from the Extended Weste...

Sérgio Sacani

Context. With a mass exceeding several 104 M⊙ and a rich and dense population of massive stars, supermassive young star clusters represent the most massive star-forming environment that is dominated by the feedback from massive stars and gravitational interactions among stars. Aims. In this paper we present the Extended Westerlund 1 and 2 Open Clusters Survey (EWOCS) project, which aims to investigate the influence of the starburst environment on the formation of stars and planets, and on the evolution of both low and high mass stars. The primary targets of this project are Westerlund 1 and 2, the closest supermassive star clusters to the Sun. Methods. The project is based primarily on recent observations conducted with the Chandra and JWST observatories. Specifically, the Chandra survey of Westerlund 1 consists of 36 new ACIS-I observations, nearly co-pointed, for a total exposure time of 1 Msec. Additionally, we included 8 archival Chandra/ACIS-S observations. This paper presents the resulting catalog of X-ray sources within and around Westerlund 1. Sources were detected by combining various existing methods, and photon extraction and source validation were carried out using the ACIS-Extract software. Results. The EWOCS X-ray catalog comprises 5963 validated sources out of the 9420 initially provided to ACIS-Extract, reaching a photon flux threshold of approximately 2 × 10−8 photons cm−2 s −1 . The X-ray sources exhibit a highly concentrated spatial distribution, with 1075 sources located within the central 1 arcmin. We have successfully detected X-ray emissions from 126 out of the 166 known massive stars of the cluster, and we have collected over 71 000 photons from the magnetar CXO J164710.20-455217.

Topic: SICKLE CELL DISEASE IN CHILDREN-3.pdf

TinyAnderson

如何办理(uvic毕业证书)维多利亚大学毕业证本科学位证书原版一模一样

yqqaatn0

原版纸张【微信：741003700 】【(uvic毕业证书)维多利亚大学毕业证】【微信：741003700 】学位证，留信认证（真实可查，永久存档）offer、雅思、外壳等材料/诚信可靠,可直接看成品样本，帮您解决无法毕业带来的各种难题！外壳，原版制作，诚信可靠，可直接看成品样本。行业标杆！精益求精，诚心合作，真诚制作！多年品质 ,按需精细制作，24小时接单,全套进口原装设备。十五年致力于帮助留学生解决难题，包您满意。本公司拥有海外各大学样板无数，能完美还原海外各大学 Bachelor Diploma degree, Master Degree Diploma 1:1完美还原海外各大学毕业材料上的工艺：水印，阴影底纹，钢印LOGO烫金烫银，LOGO烫金烫银复合重叠。文字图案浮雕、激光镭射、紫外荧光、温感、复印防伪等防伪工艺。材料咨询办理、认证咨询办理请加学历顾问Q/微741003700 留信网认证的作用: 1:该专业认证可证明留学生真实身份 2:同时对留学生所学专业登记给予评定 3:国家专业人才认证中心颁发入库证书 4:这个认证书并且可以归档倒地方 5:凡事获得留信网入网的信息将会逐步更新到个人身份内，将在公安局网内查询个人身份证信息后，同步读取人才网入库信息 6:个人职称评审加20分 7:个人信誉贷款加10分 8:在国家人才网主办的国家网络招聘大会中纳入资料，供国家高端企业选择人才

bordetella pertussis.................................ppt

kejapriya1

8.Isolation of pure cultures and preservation of cultures.pdf

by6843629

Remote Sensing and Computational, Evolutionary, Supercomputing, and Intellige...

University of Maribor

molar-distalization in orthodontics-seminar.pptx

Anagha Prasad

The debris of the ‘last major merger’ is dynamically young

Sérgio Sacani

The Milky Way’s (MW) inner stellar halo contains an [Fe/H]-rich component with highly eccentric orbits, often referred to as the ‘last major merger.’ Hypotheses for the origin of this component include Gaia-Sausage/Enceladus (GSE), where the progenitor collided with the MW proto-disc 8–11 Gyr ago, and the Virgo Radial Merger (VRM), where the progenitor collided with the MW disc within the last 3 Gyr. These two scenarios make different predictions about observable structure in local phase space, because the morphology of debris depends on how long it has had to phase mix. The recently identified phase-space folds in Gaia DR3 have positive caustic velocities, making them fundamentally different than the phase-mixed chevrons found in simulations at late times. Roughly 20 per cent of the stars in the prograde local stellar halo are associated with the observed caustics. Based on a simple phase-mixing model, the observed number of caustics are consistent with a merger that occurred 1–2 Gyr ago. We also compare the observed phase-space distribution to FIRE-2 Latte simulations of GSE-like mergers, using a quantitative measurement of phase mixing (2D causticality). The observed local phase-space distribution best matches the simulated data 1–2 Gyr after collision, and certainly not later than 3 Gyr. This is further evidence that the progenitor of the ‘last major merger’ did not collide with the MW proto-disc at early times, as is thought for the GSE, but instead collided with the MW disc within the last few Gyr, consistent with the body of work surrounding the VRM.

Compexometric titration/Chelatorphy titration/chelating titration

Vandana Devesh Sharma

Classification Metal ion ion indicators Masking and demasking reagents Estimation of Magnisium sulphate Calcium gluconate Complexometric Titration/ chelatometry titration/chelating titration, introduction, Types- 1.Direct Titration 2.Back Titration 3.Replacement Titration 4.Indirect Titration Masking agent, Demasking agents formation of complex comparition between masking and demasking agents, Indicators/Metal ion indicators/ Metallochromic indicators/pM indicators, Visual Technique,PM indicators (metallochromic), Indicators of pH, Redox Indicators Instrumental Techniques-Photometry Potentiometry Miscellaneous methods. Complex titration with EDTA.

Cytokines and their role in immune regulation.pptx

Hitesh Sikarwar

waterlessdyeingtechnolgyusing carbon dioxide chemicalspdf

LengamoLAppostilic

aziz sancar nobel prize winner: from mardin to nobel

İsa Badur

Describing and Interpreting an Immersive Learning Case with the Immersion Cub...

Leonel Morgado

Current descriptions of immersive learning cases are often difficult or impossible to compare. This is due to a myriad of different options on what details to include, which aspects are relevant, and on the descriptive approaches employed. Also, these aspects often combine very specific details with more general guidelines or indicate intents and rationales without clarifying their implementation. In this paper we provide a method to describe immersive learning cases that is structured to enable comparisons, yet flexible enough to allow researchers and practitioners to decide which aspects to include. This method leverages a taxonomy that classifies educational aspects at three levels (uses, practices, and strategies) and then utilizes two frameworks, the Immersive Learning Brain and the Immersion Cube, to enable a structured description and interpretation of immersive learning cases. The method is then demonstrated on a published immersive learning case on training for wind turbine maintenance using virtual reality. Applying the method results in a structured artifact, the Immersive Learning Case Sheet, that tags the case with its proximal uses, practices, and strategies, and refines the free text case description to ensure that matching details are included. This contribution is thus a case description method in support of future comparative research of immersive learning cases. We then discuss how the resulting description and interpretation can be leveraged to change immersion learning cases, by enriching them (considering low-effort changes or additions) or innovating (exploring more challenging avenues of transformation). The method holds significant promise to support better-grounded research in immersive learning.

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The binding of cosmological structures by massless topological defects

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原版制作(carleton毕业证书)卡尔顿大学毕业证硕士文凭原版一模一样

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The Neuroinformatics community in OpenAIRE Connect (Presentation by Sorina Pop at DI4R2018)

1. @openaire_eu The Neuroinformatics community in OpenAire Connect Sorina Pop, Axel Bonnet, Camille Maumet, Michael Kain, Christian Barillot, Tristan Glatard DI4R | Lisbon| 9 - 11 October 2018

2. • Represented by members of the France Life Imaging (FLI) collaboration • Focus on e-infrastructure services to enable interoperability between in-vivo image acquisition platforms at National and international level (EGI) • Use OpenAIRE-Connect services and promote their adoption across neuroinformatics scientists • Generate and share packages of research artefacts Neuroinformatics community

3. Neuroinformatics Dashboard

4. Dashboard for Research Communities 01101010 01100001 11010010 01101010 01100001 11010010 01101010 01100001 11010010 01101010 01100001 11010010 fund Harvest Harmonize Deduplicate Inference Repositories of publications, datasets, projects, methods, packages Research Community Service Research Community Operator Researchers 01101010 01100001 11010010 • Deposit (DOI) • Claim • Stats: research impact & OA • Manage users • Configure stats • Configure inference fund Crédits: OpenAire Connect

5. SHAring NeurOImaging Resources An open source web platform for neuro-imagingDownload stored data Support for processed (derived) data Online Visualization of stored data Data de-identification and patient privacy Download Processed data Support for multi- centric research studies User access control Support for clinical and neuropsychological scores Web Portal Collect neuroimaging data from several sources : • Dicom CD / DVD • PACS (via Dicom Q& R) • Nifti / Analyze image files a model build on an formal ontology to • Enhance data integrity • Structure the data • Manage data provenance • Facilitate collaborative research • Pool resources

6. Web portal Users 1000+ registered users in October 2018 44 publications since 2011 Neuro-image analysisCancer therapy simulation Prostate radiotherapy plan simulated with GATE(L. Grevillot and D. Sarrut) Image simulation Echocardiography simulated with FIELD-II (O. Bernard et al) Modeling and optimization of distributed computing systems Acceleration yielded by non-clairvoyant task replication (R. Ferreira da Silva et al) Brain tissue segmentation with Freesurfer Scientific applications Infrastructure Supported by EGI Infrastructure Uses biomed VO (~65 sites in Europe and beyond) 230 cumulated CPU years utilized by VIP applications in 1 year DIRAC France-Grilles Application as a service File transfer to/from grid Virtual Imaging Platform (VIP) https://vip.creatis.insa-lyon.fr

7. • Describe, publish, integrate and execute command-line applications across platforms – facilitate application porting – import and exchange of applications – open and reproducible science • Versatile JSON format to describe the command-line, inputs and outputs • Use of Linux containers to facilitate application installation and sharing • https://github.com/boutiques Boutiques Neuroinformatics software descriptors published to Zenodo with Boutiques

8. • Become providers/repositories from which OpenAire Connect can harvest software (Boutiques pipelines, Dockers, etc) and data • Upload such products to Zenodo (and get a DOI) • Boutiques implements “bosh publish” to Zenodo with support for tags • Enable interoperability and reproducibility VIP and Shanoir CAN

9. • Gather and search for all kind of research artefacts from the neuroinformatics community: literature, datasets, software • Link datasets and software to articles • Publish artefacts automatically and directly from data storage and computing platforms • Enable open and reproducible science Conclusion and perspectives

10. Thank you! Sorina POP sorina.pop@creatis.insa-lyon.fr

The Neuroinformatics community in OpenAIRE Connect (Presentation by Sorina Pop at DI4R2018)

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