Shining a light on virus infection with high-resolution microscopy
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Each year the Astbury Centre holds a research retreat to promote interdisciplinary activity, to discuss and present latest findings and to promote and encourage interdisciplinary research at the highest level. I communicated my results from a Chikungunya virus project in a 15-min presentation. Slides from this presentation are shown here.
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Shining a light on virus infection with high-resolution microscopy
- 1. SHINING A LIGHT ON VIRUS INFECTION WITH HIGH-RESOLUTION MICROSCOPY Roland Remenyi, Hong Zhou#, Ren Sun#, Mark Harris #: UC Los Angeles School of Molecular and Cellular Biology FACULTY OF BIOLOGICAL SCIENCES Mark Harris Laboratory
- 2. 1. Bioimaging of Chikungunya virus (CHIKV) replication A. Live-cell fluorescence imaging B. Confocal Microscopy with Airyscan Molecular Interactions in Cells - Preview of today’s talk
- 3. 2.5µm 250nm 50nm Cellular level Subcellular level Supramolecular & Protein level HCV-infected hepatocyte Mito- chondria ER Golgi 3-D or 4-D Light/Laser Microscopy 2-D or 3-D Electron Microscopy Super-resolution Light Microscopy Viral Particles Investigating virus infection with bioimaging at different resolutions
- 4. Fluorescence microscopy of Chikungunya virus (CHIKV) replication
- 5. Chikungunya viral life cycle Role of nsP3?
- 6. CHIKV genome organization and fluorescent reporter design Untranslate d region nsP1 nsP2 nsP3 nsP4 Noncoding region Subgenomic promoter (-) strand RNA Synthesis, RNA capping helicase proteinase RNA-dependent RNA polymeraseRNA synthesis Engineered reporter constructs: Subgenomic promoter Role of nsP3 protein?
- 7. Fluorescent reporter protein reveals dynamics of viral replication in living cells Imaged with Incucyte Zoom, Stonehouse Lab
- 8. ZsGreen mCherry Overlay Live cell transfected with CHIKV replicon Imaged with Confocal Microscope in Cat3 Facility, Dr. Jamel Mankouri nsP3 forms both punctae and tubules
- 9. Airyscan unprocessed Airyscan processed FBS Bioimaging Facility, Prof. Michelle Peckham Dr. Brian Jackson Dr. Sally Boxall Imaging replicating cells with LSM880 with Airyscan technology
- 10. 3D views of nsP3 protein in replicating cells
- 11. Future plans: Investigating the role of nsP3 in the CHIKV life cycle Examine changes in nsP3 localization in the presence of mutations and small-molecule inhibitors Track formation of nsP3-positive clusters over time Determine nsP3 localization by Stochastic Optical Reconstruction Microscopy (STORM)
- 12. Charles Rice, Rockefeller Steven Foung, Stanford Confocal microscope in Cat3 Facility, Dr. Jamel Mankouri FBS bioimaging facility, LSM880 Airyscan, Prof. Michelle Peckham, Dr. Brian Jackson, Dr. Sally Boxall Incucyte Zoom System, Prof. Nicola Stonehouse Electron Imaging Center for Nanomachines, Dr. Ivo Atanasov, Dr. Xing Zhang Advanced Light Microscopy and Spectroscopy Facility, Dr. Laurent Bentolila, Dr. Matt Schibler Electron Microscopy Laboratory, Dr Sergey Ryazantsev Reagents Facilities/Microscopes Funding NIH (National Institutes of Health) Virology/Gene therapy training grant Seed Grant for AIDS Related Malignancy Research Wellcome Trust Investigator and Multi-user equipment Award Dr. Hangfei Qi, Dr. Vaithi Arumugaswami (former member) Ren Sun lab HCV team Predoctoral Researchers Tamar Stokelman, Jerry Lo Francis Chisari, Scripps California Nanosystems Institute University of Leeds SMCB Virology Chikungunya Team Dr. Mark Harris, Dr. Andrew Tuplin Grace Roberts, Lauren Branfield, Raymond Li Andres Merits, University of Tartu Dr. Niluka Goonawardane, Dr. Hazel Stewart, Carsten Zothner, Christopher Bartlett, Lorna Kelly, Joseph Lattimer, Tracy Yin Harris Lab Acknowledgements Contact: r.g.remenyi@leeds.ac.uk Twitter: rol_rem
Editor's Notes
- Task: Viruses are intracellular parasites whose pathogenicity depends on the interaction with infected cells. We use a bioimaging approach to investigate infection at different resolutions.
- Goal: to establish a research portfolio to investigate Chikungunya virus, a re-emerging member of the alphavirus family. It’s transmitted through mosquitoes. Disease occurs in Africa, Asia and the Indian subcontinent, but currently there’s a serious outbreak in Latin America and the Caribbean.
- This improvement in resolution is achieved by the use of a multichannel area detector with 32 elements –each detector element functions as a single pinhole and allows more light to be collected. This differs from a classical confocal microscope, which illuminates one spot on the sample and employs a single pinhole to reject out of focus light. The size of the pinhole determines how much light reaches the detector, so whilst a smaller pinhole increases resolution, it also means less light gets through and the signal-to-noise ratio (SNR) decreases significantly. By using a series of pinholes, more light is collected in total, maintaining a good SNR, whilst the resolution can be improved by using 32 smaller pinholes in the detector.