Soybean plays roles in reducing soil erosion, in biological nitrogen fixation, in pests and disease management and is also an important source of plant proteins. However production remains low in Malawi because of several factors, including the limited use or non-use of rhizobial inoculants and phosphorus fertilizers. Studies were conducted in 2011/12 and 2012/13 growing seasons in central Malawi to test the response of soybean to inoculation with biofix and soil amendments with phosphorus (P) fertilizer. The research used two approaches of research designed-research managed (RDRM) and research designed-farmer managed (RDFM) on-farm trials. The RDRM trials were laid in split plots replicated three times whereas RDFM trials were laid out on randomly selected farmers’ plots and field book was used to capture data. Analysis of variance was performed using Genstat (16th Edition) and Micro Soft excel. Results showed that inoculation significantly increased biomass yield, grain yield and nodulation. P-fertilizer did not have significant impact on grain yield. The yield in RDFM trials were generally lower than RDRM. The implications of the findings in smallholder farming systems in Malawi are discussed.