This document provides an overview of Progeny's laboratory information management system (LIMS) software. It can manage samples of various types and customize databases. The LIMS allows users to design workflows, track chain of custody, and integrate with other systems. It provides barcode scanning, storage management, and audit reporting capabilities. Progeny also offers support plans and training to assist customers.
Whether you’re managing whole genome association, targeted genotyping, or linkage studies, Progeny Lab is the ideal lab management software for all of your genetic data. Progeny Lab includes all the features of Progeny Clinical - so you can manage all of your phenotypic and genotypic data in the same database for the most thorough analysis available. Support is included for both SNPs and STRs, providing you with the ability to natively import genotype data from such varied platforms as ABI, Affymetrix, Illumina, Sequenom, and others. Progeny Lab incorporates a variety of error checks and has a number of time saving features streamlining the process of gene discovery.
SCOPE Summit - Applying the OMOP data model & OHDSI software to national Euro...Kees van Bochove
Talk from Kees van Bochove, The Hyve at SCOPE Summit, Real World Data track, Jan 26, 2017, Miami
A large open source initiative for standardisation and epidemiological analysis for real world data is OHDSI: Observational Health Data Sciences and Informatics. OHDSI leverages the OMOP common data model for observational data, and provides data analysis tools for a broad range of use cases. This talk will explain OMOP and OHDSI with case study IMI EMIF, in which health data from over 50 million patients from 13 national and regional European registries is brought together.
Whether you’re managing whole genome association, targeted genotyping, or linkage studies, Progeny Lab is the ideal lab management software for all of your genetic data. Progeny Lab includes all the features of Progeny Clinical - so you can manage all of your phenotypic and genotypic data in the same database for the most thorough analysis available. Support is included for both SNPs and STRs, providing you with the ability to natively import genotype data from such varied platforms as ABI, Affymetrix, Illumina, Sequenom, and others. Progeny Lab incorporates a variety of error checks and has a number of time saving features streamlining the process of gene discovery.
SCOPE Summit - Applying the OMOP data model & OHDSI software to national Euro...Kees van Bochove
Talk from Kees van Bochove, The Hyve at SCOPE Summit, Real World Data track, Jan 26, 2017, Miami
A large open source initiative for standardisation and epidemiological analysis for real world data is OHDSI: Observational Health Data Sciences and Informatics. OHDSI leverages the OMOP common data model for observational data, and provides data analysis tools for a broad range of use cases. This talk will explain OMOP and OHDSI with case study IMI EMIF, in which health data from over 50 million patients from 13 national and regional European registries is brought together.
The internet now offers access to a myriad of online resources that can be of value to chemists working in the Life Sciences. While finding information online is, in many cases, a simple search away, the accuracy and validity of the associated data and information should be questioned. As more databases and resources are introduced online, and commonly not integrated to other resources, a scientist must perform multiple searches and then undertake the task of meshing and merging data. ChemSpider is a freely accessible online database that has taken on the challenge of meshing together distributed resources across the internet to provide a structure-based hub. It is a crowdsourcing environment hosting over 26 million unique compounds linked out to over 400 data sources. With well defined programming interfaces for integration ChemSpider has been integrated to many commercial and open software packages and is presently serving as the chemistry foundation for the IMI Open PHACTS project.
State of Florida Neo4J Graph Briefing -Payments to Prescriptions AnalysisNeo4j
Health care has many players and overlapping connections. This presentation is from the 2019 Medicaid Enterprise Systems Conference and is built on US HHS data.
This presentation provides an overview to chemical vendors (and to some extent to other depositors) of the value of putting their chemical compound collections online at ChemSPider. This is a no cost service for the community - no costs to the user or to the chemical vendor.
Big Data and the Health domain (vis-a-vis the respective H2020 Societal Challenge) - Opportunities, Challenges and Requirements. As presented and discussed in the public launch of the BigDataEurope project.
FHIR Developer Days 2015. Study on db implementations for FHIR serverIgor Bossenko
Presentation describes different approaches for implementing database for FHIR server, that were considered during implementation of Nortal National Healthcare System (NHS) for Lithuania.
Capturing clinical data, especially with family history information, has never been easy...until now! Progeny's Family History Questionnaire (FHQ) delivers the ability to custom design unlimited questionnaires in an easy-to-use, self-guiding format for use via the web, tablet or kiosk. All data captured can be integrated into your registry database, EMR, or any system, and participants or collaborators can securely access and edit the data at any time.
The internet now offers access to a myriad of online resources that can be of value to chemists working in the Life Sciences. While finding information online is, in many cases, a simple search away, the accuracy and validity of the associated data and information should be questioned. As more databases and resources are introduced online, and commonly not integrated to other resources, a scientist must perform multiple searches and then undertake the task of meshing and merging data. ChemSpider is a freely accessible online database that has taken on the challenge of meshing together distributed resources across the internet to provide a structure-based hub. It is a crowdsourcing environment hosting over 26 million unique compounds linked out to over 400 data sources. With well defined programming interfaces for integration ChemSpider has been integrated to many commercial and open software packages and is presently serving as the chemistry foundation for the IMI Open PHACTS project.
State of Florida Neo4J Graph Briefing -Payments to Prescriptions AnalysisNeo4j
Health care has many players and overlapping connections. This presentation is from the 2019 Medicaid Enterprise Systems Conference and is built on US HHS data.
This presentation provides an overview to chemical vendors (and to some extent to other depositors) of the value of putting their chemical compound collections online at ChemSPider. This is a no cost service for the community - no costs to the user or to the chemical vendor.
Big Data and the Health domain (vis-a-vis the respective H2020 Societal Challenge) - Opportunities, Challenges and Requirements. As presented and discussed in the public launch of the BigDataEurope project.
FHIR Developer Days 2015. Study on db implementations for FHIR serverIgor Bossenko
Presentation describes different approaches for implementing database for FHIR server, that were considered during implementation of Nortal National Healthcare System (NHS) for Lithuania.
Capturing clinical data, especially with family history information, has never been easy...until now! Progeny's Family History Questionnaire (FHQ) delivers the ability to custom design unlimited questionnaires in an easy-to-use, self-guiding format for use via the web, tablet or kiosk. All data captured can be integrated into your registry database, EMR, or any system, and participants or collaborators can securely access and edit the data at any time.
Progeny LIMS sets a new standard for life science LIMS software. Manage absolutely any type of sample and associated data in a fully customizable multi-level inventory system. With a flexible database that is configurable directly through the user interface, you have the power to customize your system to match any lab requirement without the need for custom programming. A dedicated Progeny LIMS specialist will work with you hand-in-hand from defining your project until the moment you go live. From biobanks to individual clinical labs, Progeny LIMS is your affordable sample tracking solution.
Progeny Clinical is the ideal pedigree and clinical data management software solution for family-based studies. Since 1996, we’ve been providing research institutions and clinical genetic services worldwide the ability to draw pedigrees and track patient history data. You can configure the database to include unlimited fields, design data entry screens, enable security features to restrict access for specific users, run queries over the data, and more. All of this functionality integrates with Progeny Lab or Progeny LIMS so all users work off of the same database if you desire.
Production Bioinformatics, emphasis on ProductionChris Dwan
Production bioinformatics at Sema4 can be thought of as data ops - a peer to the lab ops organization. We operate 24/7 to deliver correct and timely results on NGS and other data for thousands of samples per week. This deck introduces the Prod BI organization and systems architecture with a focus on what it takes to run bioinformatics in production rather than for R&D or pure research.
The spiraling cost of laboratory tests (currently estimated at $60-70 billions/year) has
been of major concern to healthcare administrators. A significant increase in testing
costs is also anticipated as a consequence of the Affordable Care Act. Several cost-
containment plans were initiated during the last decades but with limited success.
Two solutions proposed for the cost-containment of the laboratory tests are: a)
building of an informatics structure to support utilization management; b) organization
of the physician education program starting from the residency level. We believe that
this two-pronged effort shall contribute significantly towards controlling the sky-
rocketing cost of laboratory tests.
WuXi NextCODE Scales up Genomic Sequencing on AWS (ANT210-S) - AWS re:Invent ...Amazon Web Services
"Genomic sequencing is growing at a rate of 100 million sequences a year, translating into 40 exabytes by the year 2025. Handling this level of growth and performing big data analytics is a massive challenge in scalability, flexibility, and speed. In this session, learn from pioneering genomic sequencing company WuXi NextCODE, which handles complex and performance-heavy database and genomic sequencing workloads, about moving from on premises to all-in on the public cloud. Discover how WuXi NextCODE was able to achieve the performance that its workloads demand and surpass the limits of what it was able to achieve previously in genomic sequencing. This session is brought to you by AWS partner, NetApp, Inc.
Flattening the Curve with Kafka (Rishi Tarar, Northrop Grumman Corp.) Kafka S...confluent
Responding to a global pandemic presents a unique set of technical and public health challenges. The real challenge is the ability to gather data coming in via many data streams in variety of formats influences the real-world outcome and impacts everyone. The Centers for Disease Control and Prevention CELR (COVID Electronic Lab Reporting) program was established to rapidly aggregate, validate, transform, and distribute laboratory testing data submitted by public health departments and other partners. Confluent Kafka with KStreams and Connect play a critical role in program objectives to:
o Track the threat of COVID-19 virus
o Provide comprehensive data for local, state, and federal response
o Better understand locations with an increase in incidence
Labmatrix is a software application that manages the operational aspects of collaborative clinical and translational research programs, including patient recruiting, consenting, sample management (biobanking), experimental characterization of the samples and tracking of patient clinical profiles.
Open chemistry registry and mapping platform based on open source cheminforma...Valery Tkachenko
The Open PHACTS project (openphacts.org) is a European initiative, constituting a public–private partnership to enable easier, cheaper and faster drug discovery. The project is supported by the OpenPHACTS Foundation (www.openphactsfoundation.org) and funded by contributions from several pharmaceutical companies. As part of Open PHACTS, a 'Chemical Registration Service” was created to register chemicals of interest to the project, allowing compound linkage between data sets. A key concept is the support for 'scientific lenses,' which allows hierarchical mapping of chemical entities, including supporting characteristics such as charge state, tautomerism and stereochemistry. Open PHACTS aggregated various databases, including ChEMBL, ChEBI, HMDB, DrugBank, PDB, MeSH, and WikiPathways. A new project builds on the Chemical Registration Service to establish an open chemistry registry and mapping service for general data set linkage. This expansion requires the support of multiple cheminformatics formats, the conversion and mapping of various identifiers, harmonized but configurable standardization, validation of the chemical structures, and the creation of new identifiers, to produce scientific lenses, or 'link sets'. Furthermore, these identifiers will be related to the compounds chemical names (IUPAC and trivial) and related chemical structures. This presentation will describe our ongoing work to create a fully open source, easy to install platform, which supports the ideas introduced by the Open PHACTS project and expands it with community data including, for example, the data now available from the EPA CompTox Chemistry Dashboard (comptox.epa.gov). This new platform supports chemical formats and provides for identifier conversion and cross-validation between datasets. The project is completely based on open source cheminformatics toolkits and available as a set of libraries, docker images and a web frontend based on FAIR and Open Data principles. The openness of this platform will allow for scientists to process their own datasets, and make them interoperable with other online chemical databases.
During the tranSMART Annual Meeting 2015, Kees van Bochove, chair of the tranSMART Foundation Architecture Working Group, presented on the future roadmap for the tranSMART platform in a co-presentation with Keith Elliston, CEO of tranSMART Foundation.
A Step to the Clouded Solution of Scalable Clinical Genome Sequencing (BDT308...Amazon Web Services
Professors Wall and Tonellato of Harvard Medical School in collaboration with Beth Israel Deaconess Medical Center discuss the emerging area of clinical whole genome sequencing analysis and tools. They report on the use of Amazon EC2 and Spot Instances to achieve a robust clinical time processing solution and examine the barriers to and resolution of producing clinical-grade whole genome results in the cloud. They benchmark an AWS solution, called COSMOS, against local computing solutions and demonstrate the time and capacity gains conferred through the use of AWS.
The Open PHACTS project delivers an online platform integrating a wide variety of data from across chemistry and the life sciences and an ecosystem of tools and services to query this data in support of pharmacological research, turning the semantic web from a research project into something that can be used by practising medicinal chemists in both academia and industry. In the summer of 2015 it was the first winner of the European Linked Data Award. At the Royal Society of Chemistry we have provided the chemical underpinnings to this system and in this talk we review its development over the past five years. We cover both our early work on semantic modelling of chemistry data for the Open PHACTS triplestore and more recent work building an all-purpose data platform, for which the Open PHACTS data has been an important test case, what has worked well, what's missing and where this is is likely to go in future.
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Knee anatomy and clinical tests 2024.pdfvimalpl1234
This includes all relevant anatomy and clinical tests compiled from standard textbooks, Campbell,netter etc..It is comprehensive and best suited for orthopaedicians and orthopaedic residents.
NVBDCP.pptx Nation vector borne disease control programSapna Thakur
NVBDCP was launched in 2003-2004 . Vector-Borne Disease: Disease that results from an infection transmitted to humans and other animals by blood-feeding arthropods, such as mosquitoes, ticks, and fleas. Examples of vector-borne diseases include Dengue fever, West Nile Virus, Lyme disease, and malaria.
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The Central Drugs Standard Control Organization (CDSCO) is India's national regulatory body for pharmaceuticals and medical devices. Operating under the Directorate General of Health Services, Ministry of Health & Family Welfare, Government of India, the CDSCO is responsible for approving new drugs, conducting clinical trials, setting standards for drugs, controlling the quality of imported drugs, and coordinating the activities of State Drug Control Organizations by providing expert advice.
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In India, pharmacovigilance activities are monitored by the Pharmacovigilance Programme of India (PvPI), which works closely with CDSCO to collect, analyze, and act upon data regarding adverse drug reactions (ADRs). Together, they play a critical role in ensuring that the benefits of drugs outweigh their risks, maintaining high standards of patient safety, and promoting the rational use of medicines.
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Basavarajeeyam is a Sreshta Sangraha grantha (Compiled book ), written by Neelkanta kotturu Basavaraja Virachita. It contains 25 Prakaranas, First 24 Chapters related to Rogas& 25th to Rasadravyas.
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Preoperative Management of Patients on GLP-1 Receptor Agonists like Ozempic and Semiglutide
ASA GUIDELINE
NYSORA Guideline
2 Case Reports of Gastric Ultrasound
2. THE PROGENY GENETICS PLATFORM
FHQ
Family History Questionnaire
CLINICAL
Pedigree and Clinical Data
LAB
Genotype Data Management
LIMS
Complete Sample Management
3. ABOUT US
SINCE 1996
UNITED STATES
ARUP Labs
Baylor College of Medicine
Bristol Meyers Squib
Cedars-Sinai Medical Center
Children's Hospital of Philadelphia
City of Hope
Cleveland Clinic Foundation
Columbia University
Dana Farber Cancer Institute
Duke University Medical Center
GENENTECH
GlaxoSmithKline
Harvard Medical School
John Hopkins School of Medicine
Mayo Clinic
Memorial Sloan-Kettering Cancer Center
MGH
National Cancer Institute
National Institutes of Health
Stanford University
1900
UNIQUE SITES
78
COUNTRIES
UCLA School of Medicine
University of California, Irvine
University of Iowa
University of Pennsylvania
University of Pittsburgh
University of Texas, MD Anderson Cancer Center
University of Utah
USC
Vanderbilt University
CANADA
Alberta Children’s Hospital
BC Cancer Agency
McGill University Health Centre
Memorial University Newfoundland
Mount Sinai Hospital
Ontario Cancer Treatment & Research Foundation
RCMP Central Forensic Lab
The Hospital for Sick Children
Toronto General Hospital
Toronto-Sunnybrook
4. A FEW MORE OF OUR 1900 CLIENTS
UNITED KINGDOM - EUROPE
AUSTRALIA – NEW ZEALAND
Aarhus University Hospital, AAS
Belfast City Hospital
Cambridge University
CCK, Karolinska Institute
Erasmus University-Rotterdam
Helsinki University Central Hospital
Hopital Neckler Enfants Malades
Iceland Genomics/UVS
Institute of Cancer Research
Karolinska Hospital
Leiden University Medical Center
Malmö University Hospital
St. James's Hospital
The Royal Edinburgh Hospital
University of Leuven
University of Oslo
University of Regensburg
University of Tartu
University of Vienna
Uppsala University
Wellcome Trust Centre for Human Genetics
Auckland Hospital
International Diabetes Institute
Peter McCallum Cancer Institute
Queensland Institute of Medical Research
Royal Melbourne Hospital
St. George Hospital
St. Vincent's Hospital
University of Otago
Westmead Hospital
MIDDLE EAST – FAR EAST
Cancer Institute WIA
Junshinkai Familial Cancer Institute
King Faisal Specialist Hospital & Research Centre
National Cancer Center Research Institute
National Taiwan University
Radiation Effects Research Foundation
Samsung Cheil Hospital, Sungkunkwan University
Taipei Medical University
UAE University
Weizmann Institute of Science
5. CLIENT SERVER INSTALLATION
WINDOWS MULTI-USER ACCESS
Database is on the server. Progeny
application is installed on each
Windows PC that accesses the
database on the server.
PROGENY WINDOWS
DATABASE SERVER
PROGENY CLIENT
PROGENY CLIENT
PROGENY CLIENT
6. WEB SERVER INSTALLATION
PLATFORM INDEPENDENT ACCESS
Progeny Web Application and
Database can be installed on the
same Server.
PROGENY WEB APP & WINDOWS
DATABASE SERVER
Progeny provides 1 Windows App
installed on a Windows PC to act as
the Administrator license. This
allows you to create
fields, users, setup security and
audit functions, design forms and
import data.
WEB BROWSER
WEB BROWSER
WINDOWS PC
ADMINISTRATOR
Web browsers supported:
Chrome, Firefox, Safari, IE8 or newer
7. MANAGE ANY SAMPLE TYPE
Blood
Vaccines
DNA
Pathogens
Diagnostic Kits
RNA
Tissues
Chemicals
Small Molecule Libraries
Saliva
Antibodies
Urine
Serum
Environmental Specimens
10. SPREADSHEET REPORTING
Generate custom spreadsheets of
your data to query and analyze
your sample information…and
export selected data to other
programs as desired.
16. CONFIGURING THE SOFTWARE
Through the use of Actions/Reactions, Progeny is able to replicate your
Create Reactions (single instances to handle a sample) and incorporate
current lab processes and implement best practices where it makes
them into Actions ( events made up of several Reactions).
sense. ALL DONE THROUGH THE UI, NO PROGRAMMING REQUIRED!
17. ACTIONS SCAN MODE
The ‘History’ pane allows users allow you to specify how an end user of
The Actions and Reactions to see active and passive sub-functions
an action, called “reactions”, and follow the data entry prompts below.
handles a sample via the Scan Mode window.
Current Action
Current Reaction
within the Action
Data Entry
19. AUDIT CHAIN OF CUSTODY
Run chain of custody reports to
document sample handling
tagged with user IDs and date
and time stamps.
20. AUDIT DATA FIELDS
In addition to the chain of
custody, field audit reports
show you all the data that is
updated in your system for
ever audit field.
21. PROGENY INTEGRATION PLATFORM (PIP)
Clinical
Systems
Clinical
Research
Robotic
Integration
PIP
Clinical Data
Repository
EMR/EHR
SHARE DATA ACROSS SYSTEMS
Sold separately, the PIP allows you
to route data between Progeny and
another existing data source.
This module can also stand on its
own, and can actually route data
between two existing data sources
that have nothing to do with
Progeny.
22. PROGENY INTEGRATION PLATFORM (PIP)
Example – Robot Data to Progeny LIMS
PROGENY DATABASE
ROBOT DATA
PROGENY INTEGRATION
SERVICES
Data from an existing robotic machine may exist in a file that is external to Progeny. You may want to have
that data dynamically link to Progeny’s database to update the data as it changes in the external file. The PIP
can automate this process.
23. PROGENY SUPPORT PLAN (PSP)
PSP IS AN ANNUAL SUPPORT PLAN THAT PROVIDES:
•
Unlimited 800 Phone and email support FREE
•
WebEx sessions to diagnose any problems for FREE
•
Updates, New Releases, tech support for FREE
•
Custom training available on-site or via WebEx
•
On-line video tutorials available via our website
24. WHY PROGENY?
WE’RE COMMITTED TO…
•
Utilize 17 years of software expertise to service over 1900
unique sites in 78 countries.
•
Listen to our customers and deliver the most effective and
efficient customized solution – we don’t oversell!
•
Deliver personalized training and tools to get you up and
running without delay – at no additional cost.
•
Provide exceptional toll-free support – answered live by
knowledgeable technicians.
•
Believe that if you’re completely satisfied, we’ll both be
successful.
25. CONTACT US
QUESTIONS?
Conrad Brammer
Account Executive
Progeny Software, LLC
800 Palm Trail, Suite 200
Delray Beach, FL 33483
1.800.PROGENY Ext 211
866.479.6801 Fax
cbrammer@progenygenetics.com
www.progenygenetics.com