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Reusing clinical documentation
for better health

Hercules Dalianis
IT for Health
Department of Computer and Systems Sciences (DSV)
hercules@dsv.su.se
Clinical documentation

•  Legal reasons to document health care
•  Documentation is also supportive/memory
   notes for clinicians




Hercules Dalianis/Global Forum, Nov 8, 2011   2
Primary user

•  Writers and readers
   –  23 000 only in Stockholm
•  Health personnel
    –  Physicians, nurses, psychologist, therapists,
       etc.
•  Hospital management




Hercules Dalianis/Global Forum, Nov 8, 2011            3
Why clinical text mining

•  4-10 million pages of patient records are
   produced each year in Sweden (pop. 10 million)
•  The records contain both structured data (age,
   gender, admission date, clinic, ICD-10 diagnosis
   codes) and unstructured data (free text, doctor
   notes, reasoning, etc.)




Hercules Dalianis/Global Forum, Nov 8, 2011           4
Hercules Dalianis/Global Forum, Nov 8, 2011   5
Problems with health documentation
processes
•  One third of the consultation time is writing and
   reading patient records
•  Poor navigation support
•  Very little of the information in the patient
   documentation repository is reused
•  ICD-coding completely manually, low quality and
   costly
    –  15 percent wrong or missing codes
    –  Expensive: $25 billion/year in U.S. (Lang, 2007)

Hercules Dalianis/Global Forum, Nov 8, 2011               6
Solutions?

•  Yes, there are solutions!




Hercules Dalianis/Global Forum, Nov 8, 2011   7
Better overview of the records

      –  Automatic text summarisation
          •  Extraction of symptoms and diagnosis.
          •  Extraction of drugs
          •  Time line
      –  Better navigation




Hercules Dalianis/Global Forum, Nov 8, 2011          8
Hercules Dalianis   9
Improved readability and usability

      30 seconds faster reading and writing on
      each consultation will result in a huge saving
      –  In Stockholm one would save 20 MEuro/
         year!




Hercules Dalianis/Global Forum, Nov 8, 2011            10
Automatic ICD-10 code assignment

•  Use previous assigned diagnosis codes (ICD-10)
   to patient records to propose new codes.
    –  Use random indexing on all previous available
       patient records (> millions of records) to
       create a words space model.
•  Enter a diagnosis one gets an ICD-10-code
•  82 percent correct assigned codes in
   Rheumatology




Hercules Dalianis/Global Forum, Nov 8, 2011            11
Conclusions

•  Reuse all patient records for automatic
   summarisation
•  Better navigation saves money and time
•  Automatic ICD-code assignment gives higher
   quality and saves time




Hercules Dalianis/Global Forum, Nov 8, 2011     12

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Hercules Daliani

  • 1. Reusing clinical documentation for better health Hercules Dalianis IT for Health Department of Computer and Systems Sciences (DSV) hercules@dsv.su.se
  • 2. Clinical documentation •  Legal reasons to document health care •  Documentation is also supportive/memory notes for clinicians Hercules Dalianis/Global Forum, Nov 8, 2011 2
  • 3. Primary user •  Writers and readers –  23 000 only in Stockholm •  Health personnel –  Physicians, nurses, psychologist, therapists, etc. •  Hospital management Hercules Dalianis/Global Forum, Nov 8, 2011 3
  • 4. Why clinical text mining •  4-10 million pages of patient records are produced each year in Sweden (pop. 10 million) •  The records contain both structured data (age, gender, admission date, clinic, ICD-10 diagnosis codes) and unstructured data (free text, doctor notes, reasoning, etc.) Hercules Dalianis/Global Forum, Nov 8, 2011 4
  • 6. Problems with health documentation processes •  One third of the consultation time is writing and reading patient records •  Poor navigation support •  Very little of the information in the patient documentation repository is reused •  ICD-coding completely manually, low quality and costly –  15 percent wrong or missing codes –  Expensive: $25 billion/year in U.S. (Lang, 2007) Hercules Dalianis/Global Forum, Nov 8, 2011 6
  • 7. Solutions? •  Yes, there are solutions! Hercules Dalianis/Global Forum, Nov 8, 2011 7
  • 8. Better overview of the records –  Automatic text summarisation •  Extraction of symptoms and diagnosis. •  Extraction of drugs •  Time line –  Better navigation Hercules Dalianis/Global Forum, Nov 8, 2011 8
  • 10. Improved readability and usability 30 seconds faster reading and writing on each consultation will result in a huge saving –  In Stockholm one would save 20 MEuro/ year! Hercules Dalianis/Global Forum, Nov 8, 2011 10
  • 11. Automatic ICD-10 code assignment •  Use previous assigned diagnosis codes (ICD-10) to patient records to propose new codes. –  Use random indexing on all previous available patient records (> millions of records) to create a words space model. •  Enter a diagnosis one gets an ICD-10-code •  82 percent correct assigned codes in Rheumatology Hercules Dalianis/Global Forum, Nov 8, 2011 11
  • 12. Conclusions •  Reuse all patient records for automatic summarisation •  Better navigation saves money and time •  Automatic ICD-code assignment gives higher quality and saves time Hercules Dalianis/Global Forum, Nov 8, 2011 12