Expression of Genetically Engineered Chitinase Gene of Pyrococcus furiosusIJERDJOURNAL
ABSTRACT: Wild-type Pyrococcus furiosus is most likely unable to grow on chitin in the natural biotope due to a nucleotide insertion which separates the chitinase gene into two ORFs, whereas a genetically engineered strain with the deleted nucleotide is able to grow on chitin. In the latest studies, the recombinant enzyme activity against the crystal chitins was examined. But there are still some conflictions. In our study, to shed a light on whether the construct composed of a catalytic domain and a chitin binding domain show any activity against crystalline chitin, the construct was created in the pET 28b (+) expression vector and expressed in Escherichia coli. The chitinase with an approximately 55 kDa molecular weight was determined. The activity of the enzyme was measured spectrophotometrically. Despite the presence of enzyme activity against the colloidal chitin, no significant activity against the crystal chitin has been measured.
Expression of Genetically Engineered Chitinase Gene of Pyrococcus furiosusIJERDJOURNAL
ABSTRACT: Wild-type Pyrococcus furiosus is most likely unable to grow on chitin in the natural biotope due to a nucleotide insertion which separates the chitinase gene into two ORFs, whereas a genetically engineered strain with the deleted nucleotide is able to grow on chitin. In the latest studies, the recombinant enzyme activity against the crystal chitins was examined. But there are still some conflictions. In our study, to shed a light on whether the construct composed of a catalytic domain and a chitin binding domain show any activity against crystalline chitin, the construct was created in the pET 28b (+) expression vector and expressed in Escherichia coli. The chitinase with an approximately 55 kDa molecular weight was determined. The activity of the enzyme was measured spectrophotometrically. Despite the presence of enzyme activity against the colloidal chitin, no significant activity against the crystal chitin has been measured.
V79C cells were derived from V79 cell line by through chronic oxidative stress that was found to be radio-resistant. These cells had demonstrated transformation–like stable changes and could be used as model system to study oxidant induced carcinogenesis. Our objective was to understand mechanism of radiation-resistance in these cells. Apoptotic cell death was inhibited in these cells as visualized microscopically by Hoechst staining and nucleosomal ladder formation in agarose gel. Release of cytochrome c in cytoplasm and Apoptosis Inducing Factor in the mitochondrial and nuclear fraction of cells were determined by Western blotting. The caspase 9 and caspase 3 activities in these cells were estimated from fluorimetric assays. These results revealed that the radiation resistance was due to inhibition of caspase-dependent apoptotic death pathways although Apoptosis Inducing Factor mediated pathway remained unaffected. These findings may aid in understanding the mechanism of radiation resistance in tumors arising from oxidative stress.
A major focus of the current research underway is to develop disease models which may then be used to study the pathophysiology of CDG at the cellular level as well as the broader level of the organism as a whole. These disease models may also be used to investigate possible therapeutics. One of the models being used is a yeast model employing brewer's yeast or Saccharomyces cerevisiae. The process of protein glycosylation occurs in all domains of life and is highly conserved. As such the process of glycosylation in eukaryotic yeast cells provides insight into the same process in human cells.
The poster was presented at the 17th Annual ID Research Day & the 4th Annual CCfV Symposium in Halifax, Nova Scotia on April 23rd, 2012.
Activation of surrogate death receptor signalling triggers peroxynitrite depe...Saurabh Shekhar
includes information about cisplatin resistance cancer cells and their execution through peroxynitrite triggered apoptosis due to death signaling receptors basedon the findings of research article published in cell death and diseases.
Lack of association between CD45 C77G polymorphism and multiple sclerosis in ...ijtsrd
Multiple sclerosis (MS) is a severe disabling and demyelinating disease of the nervous system. Its etiology involves profound genetic component. The latest contender known to have been correlated with MS is protein tyrosine phosphatase receptor-type C (PTPRC or CD45); however, to date its role remains contentious. The aim of the current study was to examine the association of functionally significant exon 4 C77G polymorphism of CD45 with MS in Kashmiri population from Indian subcontinent. The preliminary findings of our study revealed absence of C77G in majority of the cases as well as controls. These findings strongly suggest that the alterations in CD45 are sporadically associated with the genesis of MS. In conclusion, results from our study are in accordance with some of the international studies; however, more studies with large datasets from Kashmir as well as other ethnic populations are warranted to validate the above preliminary findings and demonstrate the role of CD45 C77G polymorphism in MS pathogenesis. Insha Zahoor | Amrina Shafi | Mudasir A Mir"Lack of association between CD45 C77G polymorphism and multiple sclerosis in Kashmir" Published in International Journal of Trend in Scientific Research and Development (ijtsrd), ISSN: 2456-6470, Volume-1 | Issue-6 , October 2017, URL: http://www.ijtsrd.com/papers/ijtsrd5813.pdf http://www.ijtsrd.com/biological-science/biotechnology/5813/lack-of-association-between-cd45-c77g-polymorphism-and--multiple-sclerosis-in-kashmir/insha-zahoor
V79C cells were derived from V79 cell line by through chronic oxidative stress that was found to be radio-resistant. These cells had demonstrated transformation–like stable changes and could be used as model system to study oxidant induced carcinogenesis. Our objective was to understand mechanism of radiation-resistance in these cells. Apoptotic cell death was inhibited in these cells as visualized microscopically by Hoechst staining and nucleosomal ladder formation in agarose gel. Release of cytochrome c in cytoplasm and Apoptosis Inducing Factor in the mitochondrial and nuclear fraction of cells were determined by Western blotting. The caspase 9 and caspase 3 activities in these cells were estimated from fluorimetric assays. These results revealed that the radiation resistance was due to inhibition of caspase-dependent apoptotic death pathways although Apoptosis Inducing Factor mediated pathway remained unaffected. These findings may aid in understanding the mechanism of radiation resistance in tumors arising from oxidative stress.
A major focus of the current research underway is to develop disease models which may then be used to study the pathophysiology of CDG at the cellular level as well as the broader level of the organism as a whole. These disease models may also be used to investigate possible therapeutics. One of the models being used is a yeast model employing brewer's yeast or Saccharomyces cerevisiae. The process of protein glycosylation occurs in all domains of life and is highly conserved. As such the process of glycosylation in eukaryotic yeast cells provides insight into the same process in human cells.
The poster was presented at the 17th Annual ID Research Day & the 4th Annual CCfV Symposium in Halifax, Nova Scotia on April 23rd, 2012.
Activation of surrogate death receptor signalling triggers peroxynitrite depe...Saurabh Shekhar
includes information about cisplatin resistance cancer cells and their execution through peroxynitrite triggered apoptosis due to death signaling receptors basedon the findings of research article published in cell death and diseases.
Lack of association between CD45 C77G polymorphism and multiple sclerosis in ...ijtsrd
Multiple sclerosis (MS) is a severe disabling and demyelinating disease of the nervous system. Its etiology involves profound genetic component. The latest contender known to have been correlated with MS is protein tyrosine phosphatase receptor-type C (PTPRC or CD45); however, to date its role remains contentious. The aim of the current study was to examine the association of functionally significant exon 4 C77G polymorphism of CD45 with MS in Kashmiri population from Indian subcontinent. The preliminary findings of our study revealed absence of C77G in majority of the cases as well as controls. These findings strongly suggest that the alterations in CD45 are sporadically associated with the genesis of MS. In conclusion, results from our study are in accordance with some of the international studies; however, more studies with large datasets from Kashmir as well as other ethnic populations are warranted to validate the above preliminary findings and demonstrate the role of CD45 C77G polymorphism in MS pathogenesis. Insha Zahoor | Amrina Shafi | Mudasir A Mir"Lack of association between CD45 C77G polymorphism and multiple sclerosis in Kashmir" Published in International Journal of Trend in Scientific Research and Development (ijtsrd), ISSN: 2456-6470, Volume-1 | Issue-6 , October 2017, URL: http://www.ijtsrd.com/papers/ijtsrd5813.pdf http://www.ijtsrd.com/biological-science/biotechnology/5813/lack-of-association-between-cd45-c77g-polymorphism-and--multiple-sclerosis-in-kashmir/insha-zahoor
The Impact of Messaging Standards on Event-Driven Architecture and IoTSolace
Sumeet Puri (@puri_sumeet) discusses the state and future of messaging standards and protocols such as JMS, MQTT, AMQP and REST, and explains how each affects event-driven architecture as applied to enterprise integration, big data analytics, private and public clouds, and the Internet of Things. Use cases included.
Interested in hearing the narrative in addition to seeing the slides? Contact us!
Crimson Publishers- CPG Methylation in G-Quadruplex and IMotif DNA StructuresCrimsonPublishers-SBB
Abberant hypomethylation in DNA regions with noncanonical folding potential (ncDNA motifs) is believed to predetermine tumor development - presumably, by facilitating G-quadruplex (G4) and/or i-motif (IM) formation via altering nucleosome positioning (stable G4s induce subsequent genomic rearrangements). We questioned whether CpG methylation per se affects the dsDNA-ncDNA equilibrium. Thermodynamic studies of genomic and model oligonucleotides with methylated CpG sites at different positions are reported. The genomic oligonucleotides analyzed in this work are DNA fragments with reportedly different methylation statuses in colorectal cancer and normal cells. Free energies of duplex, ncDNA formation from single strands were calculated based on melting curve analyses. Polyethylenglycole was used to imitate crowding effect. Our results suggest that CpG methylation may alter the energetic barrier for dsDNA-IM transitions.
Effective in vitro gene delivery to murine cancerous brain cells using carbon...Nanomedicine Journal (NMJ)
Abstract
Objective(s):
Carbon nanotube (CNT) has been widely applied at molecular and cellular levels due to its exceptional properties. Studies based on conjugation of CNTs with biological molecules indicated that biological activity is preserved. Polyethylenimine (PEI) is explored in designing novel gene delivery vectors due to its ability to condense plasmid DNA through electrostatic attraction. In this study functionalization and grafting polyethylenimine onto the surface of carbon nanotube was used to improve the solubility and biocompatibility.
Materials and Methods:
The effect of molecular weight of polymer on final efficacy of vectors has been investigated using three different molecular weights of polymer. In this study no linker was used and both segments (PEI and CNT) were directly attached resulted in the synthesis of three different vectors. Synthesized vectors were tested for their ability to condense plasmid DNA and cellular toxicity using ethidium bromide and MTT assays. Size and Zeta potential of nanoparticles was determined using Malvern zeta sizer. Evaluation of transfection efficiency of vectors was carried out on N2A cell line by different methods including qualitative fluorescence imaging, flow cytometry and luciferase assay.
Results:
All three synthesized vectors bear positive surface charges with sizes in the range of 85-190 nm. More than 80 percent of treated cells were viable and in the case of V25 significant improvement in reducing cytotoxicity compared to unmodified polymer was observed. Obtained results indicated that vector containing PEI 1.8 kDa has the greatest improvement in terms of its transfection efficiency compared to unmodified polymer.
Conclusion:
Conjugation of PEI with carbon nanotube les to new vectors with lowered cytotoxicity and higher transfection efficiency. The highest transfection efficiency was obtained with the lowest molecular weight PEI.
1. Preparation of modified peptide solutions:
‒ Preheated (80⁰C) for 20min, kept at 37⁰C.
Cell culture: Mouse fibroblast (NIH 3T3) cells were seeded and incubated with
several peptides [15uM, preheated] for 1 hr in different temperature.
Flow cytometer (Cell Lab Quanta SC MPL, Beckman Coulter): Cells were
washed, trypsinized and analyzed.
Circular dichromism (CD) spectroscopy: CD provided conformational data of
peptides at different temperatures.
Confocal microscopy (Olympus Fluoview 1000): Confocal imaging was used to
investigate peptide internalization.
Peptide Internalization Triggered by Temperature
Myungeun Oh, Chloe Hu, Katarzyna Slowinska, Ph.D.
Department of Chemistry and Biochemistry, California State University Long Beach
Cell penetrating peptides (CPPs) are known for their ability to carry molecules
across cell membrane. CPPs are efficient carriers of molecular cargo in micro-
molar concentration and penetrate cell membrane without damage to the cell.
Yet, CPP carriers are not selective and are not capable of targeted delivery
unless specific modification is added into CPP structure. This modification is
usually attachment of small molecule or peptide sequence targeting specific
molecular receptor. Here we report the attempt to design a protocol for
selective uptake of CPP that is based on peptide conformation. This protocol
opens a possibility of targeting cells without molecular targets. Here we
modified CPPs with collagen-like domain that allows peptide to fold into triple
helix conformation. This folding process is reversible and temperature
dependent. With confocal microscopy and flow cytometry we show the
controlled internalization of CPP, dependent on peptide folding that is
controlled with temperature. This type of controlled delivery may open the
possibility of active targeting cells that does not have known molecular targets.
Peptide Sequence Tm (⁰C)
V2R FITC-Aβ-GG- GPPOOGPGGGPOOPGOOPGGOOPP- R6 -
FL8V1 FITC-Aβ-GG-(POG)8- (RRG)2 48.8
FL6V1 FITC-Aβ-GG-(POG)6- (RRG)2 15.33
FL7V1 FlTC-Aβ-GG-(POG)7-(RRG)2 16.29
CPPs are well known for their ability to penetrate cell membrane and their
potential application as drug carriers. Yet their indiscrimination of cellular
membrane penetration hinders their potential clinical use. Here, we showed
the controlled localization of modified peptides using their conformational
change triggered by temperature. Result consistently indicated that the
peptides were internalized at temperature lower than their Tm. We concluded
that the cellular localization of peptides can be manipulated by temperature.
1. Bakota, E. , Sensoy, O. , Ozgur, B. , Sayar, M. , & Hartgerink, J. (2013). Self-
assembling multidomain peptide fibers with aromatic
cores.Biomacromolecules, 14(5), 1370-1378.
2.Fretz, M. , Penning, N. , Al-Taei, S. , Futaki, S. , Takeuchi, T. , et al. (2007).
Temperature-, concentration- and cholesterol-dependent translocation of l- and d-
octa-arginine across the plasma and nuclear membrane of cd34+ leukaemia
cells. The Biochemical Journal, 403(2), 335-342
3.Madani, F. , Lindberg, S. , Langel, U. , Futaki, S. , & Gräslund, A. (2011). Mechanisms
of cellular uptake of cell-penetrating peptides. Journal of Biophysics (Hindawi
Publishing Corporation : Online), 2011, 414729
4.Shinde, A., Feher, K.M., Hu, C., Slowinska, K. (2014).Folding short arginine-rice
sequences into triple helix enables efficient internalization. [submitted]
Introduction
Conclusion
Result
Methods and Materials
References
4⁰C
1 hr
Both Brightfield FITC
37⁰C
1 hr
4⁰C
1 hr
Both Brightfield FITC
37⁰C
1 hr
4⁰C
1 hr
Both Brightfield FITC
37⁰C
1 hr
Flow
4⁰C
1 hr
Both Brightfield FITC
37⁰C
1 hr
Flow
A B
Figure 2. Diagram of methods. (A) Procedure for taking confocal image with cell-seeded MatTek
dish. (B) Setup for dynamic temperature experiment.
We used confocal imaging and flow cytometer to investigate the
internalization of peptides by conformational change due to temperature
difference. Resulting data (Fig. 3) showed peptide internalization at
temperature lower than Tm for the peptides that have collagen mimetic
sequence. No internalization was observed for peptide at temperature
higher than Tm.
In order to look at peptide internalization controlled by temperature,
apparatus was designed which involved temperature gradient. This tubing
apparatus (Fig. 4) was set up inside the incubator to keep the cells at body
temperature (37⁰C). Fountain pump was used to circulate cold water
through the tube. One end of the coverslip with cells was put on top of the
tube to give low temperature (8 ⁰C -13 ⁰C). The other end of the coverslip
was put on top of a piece of tube to level out. This created the temperature
gradient on the coverslip which ranged from 8 ⁰C to 25 ⁰C. Using this
temperature gradient, dynamic peptide internalization can be investigated.
Contacts: Chloe Hu
Chloe.hu@student.csulb.edu
Katarzyna Slowinska
Katarzyna.slowinska@csulb.edu
Website: http://slowinskalab.weebly.com/research.html
Merlyn Arostegui
Merlyn.arostegui@gmail.com
Myungeun Oh
Myungeun.oh@student.csulb.edu
This project was supported by National Institutes of Health.
Special thanks to Dr. Slowinska and all the members of Slowinska lab .
Acknowledgements:
Figure 1. Diagram of methods. (A) Structure of modified peptide. (B) CD curve showing transition
temperature (Tm) and peptide conformation of FL7V1 peptide.
Table 1. Modified peptides information
Figure 3. Images from confocal microscopy (Both, Brightfield, and FITC) and flow cytometer. All flow data
represent peptides at 4⁰C and 37⁰C except for FL6V1 (15 ⁰C and 37⁰C).
A
Flow
Flow
Figure 4. Experiment looking at dynamic internalization of peptide. (A) Control coverslip sitting
inside incubator shelf. Edge of the coverslip is marked with red tape. (B) Coverslip with warm end
(bottom) and cold end (top, water tube running underneath). Edge of the coverslip is drawn on
screen with black line.
B
Related posters:
ORGM 414: Circular dichroism studies of hybrid cell penetrating–collagen peptides
Author: Chloe Hu [8:00-10:00pm Mar 24, Hall C – Colorado Convention Center]
BIOT 256: Feasibility of targeting cells without unique molecular targets
Author: Katarzyna Slowinska [6:00-9:00pm Mar 24, Imperial Ballroom – Grand Hyatt Denver]