The document reports a rare case of squamous cell carcinoma in the native kidney of a 54-year-old renal transplant recipient who presented with flank pain and underwent nephrectomy. The tumor was treated with adjuvant radiotherapy, utilizing image-guided techniques due to its aggressive nature and proximity to sensitive organs. Post-surgery, the patient developed a urethral nodule, which was excised, and surveillance was recommended given negative margins from the biopsy.