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1138	 VOLUME 33 NUMBER 11 NOVEMBER 2015 NATURE BIOTECHNOLOGY
Osmat A. Jefferson, Deniz Köllhofer, Thomas
H. Ehrich and Richard A. Jefferson are at
Queensland University of Technology, Brisbane,
Australia, and at Cambia, Canberra, Australia.
e-mail: osmat@cambia.org or raj@cambia.org
bined the findings from all three genomes
to check sequence or patent overlap and
redundancy.
Results show that only 24% (2,367 out of
9,838), 15% (1,190 out of 7,836) and 24%
(2,595 out of 10,634) of the earlier accounted
for as maize, rice and soybean referenced
sequences, respectively, were actually used in
plant-related inventions. These correspond
to 846 maize-related patents, 493 rice-related
patents and 638 soybean-related patents—or
1,633 granted patents in total, as we found
some overlapping patents across the three
data sets. The level of overlap among refer-
enced sequences was 9% and redundancy was
more than 30%, and only 10% of sequences
comprised more than 50 base pairs.
According to the US classification codes, in
the hand-edited collection, 65% of inventions
were related to the processes of introducing or
rearranging a nucleic acid molecule into a plant
cell or part, either as such or to develop a trans-
genic plant or plant part; 48% were related to a
plant per se (including a higher plant), seedling
or plant seed or part; 45% were related to the
useofvectorsfortheintroductionofexogenous
nucleic acid molecules in host cells; and 33%
were related to the transformed plant cell or cell
line or to plant proteins used as compounds.
Claim analysis, on the other hand, revealed
clearer patterns of sequence use. Although
sequence use was broadly similar in plant-
and human-related inventions—on the basis
of the categories identified in our human
genome study8—in plant-related inventions,
such use was more intertwined within a single
patent document. For example, in US patent
8,692,076 (available at https://www.lens.org/
lens/patent/US_8692076_B2), the sequence
identified as SEQ ID No: 1 was mentioned
in claim 1 as part of a larger sequence and so
would have been categorized as a “Subpart” in
The ownership question of plant gene and genome
intellectual properties
Osmat A Jefferson, Deniz Köllhofer, Thomas H Ehrich & Richard A Jefferson
The restructuring of the crop agriculture industry over the past two decades has enabled patent holders to exclude,
prevent and deter others from using certain research tools and delay or block further follow-on inventions.
The raging legal debates on the patent eli-
gibility of genetic sequences extend from
Europe, where in 2010 the European Court
of Justice in Monsanto Technology LLC v.
Cefetra BV held that protection for a pat-
ent claiming a DNA sequence is limited by
a “functionality” requirement as disclosed
in the patent document1, to the United
States, where from 2012 to 2013, the US
Supreme Court in Association for Molecular
Pathology v. Myriad Genetics, Inc.2 and Mayo
Collaborative Services v. Prometheus Labs,
Inc.3 upheld a shift in the broad scope of
patentability of genetic sequences. In fact,
owing to additional social and moral con-
cerns over human or plant gene patents,
governments of countries such as Brazil and
China have also tried, either through court
decisions and/or enacted policies, to shape
their own standards within the international
legal framework and their ability to restrict
the patentability of subject matter—be it in
medicine or industrial agriculture4,5.
For example, Brazil allows the patenting of
methods to transform plants and expression
vectors containing heterologous sequences,
but it does not allow the patenting of biologi-
cal sequences isolated from plants or any parts
of plants and plant varieties6. China allows
the patenting of isolated sequences, modified
sequences and transformed plant cells, but
carves out exclusions to make all or part of
plants and plant varieties unpatentable7.
Thus, considering how divergent and
complex the spectrum of interests in gene
­patenting is becoming and how limited is our
understanding of the practices across various
economies, we have designed and developed
a dynamic platform, the patent sequence
(PatSeq) toolkit, to render biological patents
and their disclosed genetic sequences more
publicly accessible and their contextual navi-
gation more evidence based8.
We recently reported9 on the mapping of
patent-disclosed sequences onto three crop
genomes(maize,riceandsoybean),theanalysis
of overlapped sequences among plant and
human genomes, and on the recently adopted
changestothescopeofpatentabilityintroduced
by the United State Patent and Trade Office
(USPTO). Here, we hand edit each of the three
plant genome patent sequence maps to identify
sequences referenced in the claims of granted
patents and analyze their corresponding patent
ownership within the context of other plant
intellectual property (IP) rights. We conclude
by discussing the impact of the current per-
ceptions of ownership on the industry and the
public interests.
Referenced sequences that may be
related to plant inventions
The task of determining which of the mapped
sequences were referenced in plant-related
inventions was challenging, as we could
not rely on the original sequence source to
identify relevant patent sequences. In addi-
tion, and unfortunately, the majority of the
referenced sequences in granted claims had
non-plant origins or were unknown, unspeci-
fied or artificial. We initially used US clas-
sification codes to screen the corresponding
patents and eliminate non-plant patents, then
hand edited the data and analyzed broadly
the claims to assemble inventions that can be
related to plants or cover basic research topics
that may be applied to plants. We then com-
PATENTS
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NATURE BIOTECHNOLOGY VOLUME 33 NUMBER 10 NOVEMBER 2015	 1139
the use of sequence as ‘isolated’ or in a vector;
the use of the vector; and the use of geneti-
cally modified host cells, host plant(s), seeds,
progenies and methods to produce, detect
and use such sequences. Method claims, be
they to regulate plant gene expression, target
genome changes or improve or manage crop
yield by genetic engineering methods, were
very common, as were claims covering basic
core research technologies. To enable further
technology landscaping of the data, we pro-
vide the unedited raw sequences in PatSeq
Explorer (https://www.lens.org/lens/bio/
patseqexplorer) and are happy to collaborate
on the further analyses of the hand-edited
­collection of plant related inventions.
Ownership of plant-related gene patents
To disambiguate applicant and owner names
in the hand-edited collection, we consulted
the publicly available assignment data from
the USPTO (ref. 10), curated and cleaned
applicant data from the European Patent
Office’s DOCDB database and further
explored each company, including its name
changes, acquisitions, mergers and joint
ventures, through press releases, company
websites and other publicly available data11.
The cumbersome and incomplete process
underlines an important need for a globally
harmonized data set with persistent identi-
fiers for patent ownership, including corpo-
rate relationships that illuminate the ultimate
owner of patents.
The biggest lacuna in this analysis—the
‘elephant in the room’ of all patent analy-
ses—is the absence in the public record of
who owns the rights to a patent. Licensing
information is rarely made public but would
completely change the understanding of the
state of competition and trust formation and
the effectiveness of policy instruments, invest-
ment tools and public science and technology
expenditure priorities. In principle, virtually
all analyses of patent control are confounded
and could be misleading or completely incor-
rect in the absence of comprehensive licens-
ing information. If this is not made statutorily
available, global innovation policy—in gene
patenting and in all contentious and impor-
tant domains of innovations—will be based
on surmise and on the easy data, not the right
data.
Nonetheless, with the data that can readily
be gleaned publicly, our analysis of mapped
and referenced patent sequences across the
three crop genomes revealed DuPont and its
affiliates as the holder of the largest collection
our human genome study. The same sequence
is mentioned as the target of a detection
assay in claim 3 and so would have been cat-
egorized as a “Target” with respect to that
claim. SEQ ID No: 1 then appears in claims
4, 7 and 12 as part of a genetically modified
soybean plant or seed and so would have
been categorized as “Alter phenotype” with
respect to those claims. In other words, the
same sequence would have been categorized
three different ways for this patent, and this
does not include claims that encompass the
sequence without explicitly mentioning it,
such as for example claim 8. Therefore, unlike
in humans, granted claims covering plant-
related genes or gene fragments comprised
0
100
200
Maize Rice Soybean
400
500
600
700
800
900
1,000
M
onsanto
DuPont
U
S
university
U
S
research
instituteBayerBASF
N
ovartis
Syngenta
Lim
agrain
U
S
governm
ent
M
onsanto
DuPont
U
S
university
U
S
research
instituteBayerBASF
N
ovartis
Syngenta
Lim
agrain
U
S
governm
ent
M
onsanto
DuPont
U
S
university
U
S
research
instituteBayerBASF
N
ovartis
Syngenta
Lim
agrain
U
S
governm
ent
Sequences-GC
Granted patents
Sequenceorpatentnumber(plantrelated)
Figure 1 Holdings of granted patents and their referenced sequences in the claims (GC) of the
hand-edited plant-related collection, based on the edited applicant and owner data. Only the top 10
applicants are shown.
Figure 2 Contribution of public and private sectors to maize, rice and soybean gene patenting activities from 1993–2014. Number of granted patents (a) or
referenced sequences in granted claims (b) in the hand-edited plant-related collection, according to the mapping of patent sequences onto maize, rice and
soybean genomes combined and their reference in granted claims.
0
200
400
600
800
1,000
1,200
1,400
1,600 Private sector (sequences-GC)
Public sector (sequence-GC)
0
20
40
60
80
100
120
140
160 Private sector (patents)
Public sector (patents)
Publication yearPublication year
Numberofgrantedpatentsinthe
hand-editedplant-relatedcollection
Numberofreferencedsequencesinthe
hand-editedplantrelatedcollection
1993 1996 1999 2002 2005 2008 2011 20141993 1996 1999 2002 2005 2008 2011 2014
a b
PAT E N T S
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1140	 VOLUME 33 NUMBER 11 NOVEMBER 2015 NATURE BIOTECHNOLOGY
of gene patents. It holds more gene patents
than Monsanto or the rest of the US indus-
try—including small and medium biotech
companies and governmental research insti-
tutes and ­universities—put together (Fig. 1).
We cannot ascertain that these results
represent actual practices, as we have not
accounted for the cross-licensing agreements
that take place between various IP owners.
The results also suggest that the public sector,
which includes universities, government and
research institutes, is active in plant-related
gene patenting. So, to draw a larger perspec-
tive on its contribution, we grouped our data
on the basis of the affiliation of the applicant
or owner—either to the public or the private
sector—and plotted it against publication
year (1993–2014). Similar grouping was also
performed using the referenced sequence
data.
We found that the public sector’s activity
in plant gene patenting has been signifi-
cant throughout the past 22 years. At the
early stage of biotechnology and biological
research on these genomes, the public sec-
tor’s contribution was 40–50% by 2000. Since
then it has varied, between 12.5% (in 2005)
and 27.9% (in 2014), with an average of 25%
annual contribution, on the basis of the pat-
ent holdings in the hand-edited collection
(Fig. 2a). These findings are similar to what
was reported in 2003 (ref. 12). However,
as our results cover only three major agri-
cultural crops and extend from the 1990s
to 2014, they suggest a gradually widening
gap in the ownership of plant gene patents
between the private and public sectors. Again,
this conclusion is subject to the caveats that
assignments of public IP to private hands—or
indeed exclusive licensing—are not typically
a matter of public record.
Upon using the referenced sequence hold-
ings as a proxy to public sector’s contribu-
tion to the inventions, we found that in the
early stages of biotechnology and biological
research, the public sector was less active
than the private sector in capturing or refer-
encing sequences in patent claims until 2005,
when it started to reference a large number of
sequences in patent claims (Fig. 2b), imply-
ing the emergence of a convergent business
model between the sectors in the past decade.
Here also, we limited our analysis to plant-
related gene patents, but to provide a broader
0 25 50 75 100 125 150 175 200 225 250 275 300
2014
2013
2012
2011
2010
2009
2008
2007
2006
2005
2004
2003
2002
2001
2000
1999
1998
1997
1996
1995
1994
1993
1992
1991
1990
0 25 50 75 100 125 150 175 200 225 250 275 300
a
b
c
0 10 20 30 40 50
Bayer Cropscience
RiceTec
Rice Researchers, Inc.
Private industry-Japan
Hisparroz
Busch Agricultural Resources, Inc.
Bunge Milling, Inc.
Cooperative (farmers)
Research institutes
1991
1994
1997
1999
2003
2005
2007
2012
2014
0 50 100 150 200 250 300
AgReliant
Seed company-Pakistan
Northstar Genetics Ltd.
Agchemical company-Japan
Dow Agrosciences
Bayer Cropscience
Cooperative-US
Research institutes
Syngenta
DuPont
Monsanto
1991
1993
1995
1997
1999
2001
2003
2005
2007
2009
2011
2014
Issueyear
Number of issued PVP certificates
Maize
Rice
Soybean
Issueyear
Number of issued PVP certificates
Issueyear
Number of issued PVP certificates
Monsanto
DuPont
Syngenta
Dow Agrosciences
Research institutes-US
Limagrain-BASF-AgReliant
Individual
Ingredion
Family-owned company
KWS
Abbott & Cobb, Inc.
Non-practicing entity
Page’s Seeds
ConAgra Foods
Figure 3 PVP certificates issued for three major crop varieties, 1990–2014. Number of certificates issued for maize (a), rice (b) and soybean (c) varieties in
the United States, based on USDA data18.
PAT E N T S
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NATURE BIOTECHNOLOGY VOLUME 33 NUMBER 10 NOVEMBER 2015	 1141
varieties can be protected by a specific plant
patent under the Plant Patent Act of 1930
for asexually reproducible plants; by a plant
variety protection (PVP) certificate under
the Plant Variety Protection Act of 1970 for
sexually reproducible plants or tuber-propa-
gated plant varieties; or, since 1985, by utility
patents16.
Because several types of protection can be
granted at the same time—for example, either
a plant patent or a PVP certificate with a util-
ity patent—and exclusive rights extend for
20 years, any IP right holder on any of the
crops can in principle benefit not only by
enforcing their IP rights but also by holding
off competition in the market and potentially
delaying innovation on certain technologies,
especially when the granted rights are under
utility patents17. Utility patents have a broader
scope, including protection on the plant itself,
its diverse uses, its progenies and the method
used to produce it, and they have an impact
on follow-on innovations.
To examine utility patent holdings and PVP
certificates issued on maize, rice and soybean,
we requested and received records on plant
variety certificates issued on each of the three
crops from the United States Department of
Agriculture18 and created utility patent col-
lections in the Lens, using US classification
codes for maize (800/320.1), rice (800/320.2)
and soybean (800/312). In addition, for each
data set we hand-edited and disambiguated
the names of applicants or owners and plotted
patent and certificate holdings on the basis
of the date issued (for certificates) or the fil-
ing year (for utility patents). We found that
between 31 August 1990 and 19 September
2014, a total of 1,963; 111; and 1,991 PVP cer-
tificates were issued on maize, rice and soy-
bean varieties, respectively, and 3,566; 409;
and 2,967 utility patents were granted on each
crop, respectively.
Plotting PVP and patent holdings over
the past 25 years confirms that DuPont and
Monsanto, including their published subsid-
iaries and acquisitions, have held a dominant
position over maize and soybean genome IP
over time, followed by Syngenta and BASF
(Figs. 3 and 4). The data also show that the
major IP holders were involved in IP acquisi-
tions as early as 1990 and that although the
number of holdings was increasing, a gap
was forming between these entities and other
applicants and owners (Figs. 3a,c and 4a,c) in
that industry, confirming a gradual consolida-
tion of IP in a few key players. By 2008–2010,
small or individual owners appear to have
been almost nonexistent.
In rice, trends were slightly different. With
fewer holdings in both PVP and utility patents
view of current maize, rice and soybean IP
practices, we extended the analysis to include
those on utility patents that target genomes
rather than genes and other IP data such as
that on plant variety protection certificates.
Currently, various legal regimes are available
to protect plants13, the industry is heavily
concentrated14 and old gene technologies
are evolving into genome-based modifica-
tion technologies15, particularly in the United
States, where applicants can double protect a
plant genome.
Genome IP practices in the
United States
Uniquely in the United States, plants and their
products can be protected by patents and by
other IP mechanisms at the same time. Plant
Figure 4 Utility patents issued from 1990 to 2014. Utility patents issued on maize (a), rice (b) and
soybean (c) plants, based on searches for US classification codes 800/320.1 (maize), 800/320.2 (rice)
and 800/312 (soybean).
0
25
50
75
100
125
150
175
200
225
250
1992 1994 1996 1998 2000 2002 2004 2006 2008 2010 2012
Numberofutilitypatentsissued
Filing year
a
b
Posco
Nunza
Nestle
Metabolix Inc.
Mendel Biotechnology Inc.
Horizon Seed Technologies
Genomine Inc.
Evogene Ltd.
Enza Zaden BV
Crookham Co.
Chromatin Inc.
Cerrado Natural Systems Group
Boehringer Ingelheim
Barkley Seeds Inc.
Applied Biotechnology Institute
Agrisoma Biosciences Inc.
Acaabco Holdings LLC
Abbott Labs
Suntava LLC
Prodigene Inc.
Nutropia
Plant Sensory Systems LLC
Eisai
Brownseed Genetics Inc.
Academia Sinica
Japan Tabacco Inc.
Ceres Inc.
Stine Seed Co.
Nonpracticing entity
Ingredion Inc.
Cooperatives
Limagrain
KWS
Bayer Cropscience
BASF
Research institutes
Dow Agrosciences
Syngenta
Monsanto
DuPont
0
25
50
75
100
125
150
175
200
225
250
1992 1994 1996 1998 2000 2002 2004 2006 2008 2010 2012
Numberofutilitypatentsissued
Filing year
Yeda Research and Development
Yan's Heterosis and Herbicide, Inc.
Suntory Holdings Ltd.
Plantechno
Nutropia
Nunhems BV
Nestle
MPG Cologne
Metanomics
Merck & Co.
KWS
Korea Kumho Petrochemical Co.
Inc. Admin Agency Naro
Genoplante Valor
Enza Zaden Beheer BV
Corn Products Development, Inc.
Avestha Gengraine Technologies Pvt.. Ltd.
British American Tobacco Ltd.
Ceres Inc.
Eisai
Ventria Bioscience
Limagrain
Academia Sinica
Nonpracticing entity
Japan Tobacco Inc.
Dow Agrosciences
Syngenta
R T AG
Bayer Cropscience
Monsanto
BASF
DuPont
Research institutes
0
25
50
75
100
125
150
175
200
225
250
1994 1996 1998 2000 2002 2004 2006 2008 2010 2012 2014
Numberofutilitypatentsissued
Filing year
TMG
Suntory Holdings Ltd.
Soymeds
Schillinger Seed
Royster Clark Inc.
Plantechno
Individual
Evolutionary Genomics
Evogene Ltd.
DLF Trifolium
Chromatin Inc.
Chemtura Corporation
Agrisoma Biosciences Inc.
Abbott Labs
Nutropia
Nestle
Sembiosys Genetics Inc.
Nonpracticing entity
Metabolix
Mark Seed Company
Limagrain
Ceres Inc.
Bayer Cropscience
Diamond V Mills Co.
Dow Agrosciences
BASF
Stine Seed Co.
MS Technologies LLC
Research institutes
Merschman Seeds Inc.
Syngenta
DuPont
Monsanto
c
PAT E N T S
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1142	 VOLUME 33 NUMBER 11 NOVEMBER 2015 NATURE BIOTECHNOLOGY
it would not be enough. The power of a patent
lies in the rights to exclude, or not be excluded,
and these rights can be transferred separately
from ownership in the form of a license.
A critical policy imperative should mandate
public disclosure and recordation of licens-
ing status of patents derived from such public
research, or conducted by public institutions
under contract. Only then can we sensibly
assess the degree of compliance with public
goals, or capture by private interests, and take
evidence-based steps to improve the desired
outcomes.
Aspublicinvestmentincropagriculturecon-
tinuestostagnate23,thepublicinnovationspace
risks capture by private interests, and moving
away from modest market and margins, or
innovations with many but diffuse beneficia-
ries, such as those promoting environmental
benefit, focusing rather on financially valuable
inventions with high-value capture potential.
This outcome would be of questionable desir-
ability for goals of diversification and resilience
and could affect many economies, environ-
ments and communities.
Only through dramatic improvements in
transparency—of patent meaning, of patent
ownership, of license status and of placement
of patent rights in the context of innovation
knowledge—can the full potential of science
and technology in agricultural innovation be
reached, with the broadest canvas of ideas, par-
ticipants and public support.
Note: Any Supplementary Information and Source Data
files are available in the online version of the paper
(doi:10.1038/nbt.3393).
ACKNOWLEDGMENTS
We thank I. Medina (University of Cambridge) for
ongoing support of Genome Maps and making the crop
genomes available in Cellbase; P. Howard (Michigan
State University) for sharing data on the changes of
ownership in the US agriculture seed industry from
1996 to 2013; the Lens team at Cambia for continually
improving the Lens features; and Small Multiples
(Sydney) for help in improving the standalone PatSeq
toolkit. We are particularly grateful for review by
S. Hughes at the early stages of this project. This work
was supported, in part, by the Bill & Melinda Gates
Foundation 2013 Global Health Grant–Cambia Lens
Accelerated Grant OPP1104285 (R.A.J.); Gordon and
Betty Moore Foundation Grant GBMF 3465 (R.A.J.)
and Queensland University Technology Grant 321121-
0023/08 (O.A.J.).
COMPETING FINANCIAL INTERESTS
The authors declare no competing financial interests.
1.	 Monsanto Technology LLC v. Cefetra BV and Others.
ECJ Case C-428/08.
2. 	 Association for Molecular Pathology, et al. v. Myriad
Genetics, Inc., et al. 569 US 12–398 (2013).
3.	 Mayo Collaborative Services v. Prometheus Labs, Inc.
566 US ___, 132 S. Ct. 1289 (2012).
4.	 Abbott, F.M., Correa, C.M. & Drahos, P. in Emerging
Markets and World Patent Order (eds. Abbott, F.M. et
al.) 3–32 (Edward Elgar Publishing, 2014).
than for maize or soybean, rice showed a more
diversesetofapplicants.Itseemsthatfrom2003
onward,researchinstitutesandfarmercoopera-
tives have been more engaged in acquiring PVP
certificates than have DuPont or Monsanto,
for example (Fig. 3b). However, DuPont has
remained active in acquiring utility patents on
ricesince1996,as faras the public recordsshow
(Fig. 4b).
Complementing these results with those
obtained from ownership analysis of the hand-
edited plant-related collection re-asserts the
dominant role of DuPont and its affiliates in
plant-related IP portfolio globally, followed by
the US industry, which includes small biotech
companies, governmental research institutes
and universities, and then by Monsanto and its
affiliates.
These results may or may not represent
actual practices; as discussed above, patent
owners are not legally required to disclose reas-
signment or licensing data to the patent office.
The public can see only the information that a
patent owner chooses to provide. For example,
a large biotech could license all or part of its
patent portfolio to another large biotech, which
couldinturnsublicenseittoasmallercompany.
A young entrepreneur interested in that collec-
tion of patents could spend huge sums on law-
yer’s fees for investigating the true ownership of
eachpatentordevelopingafreedom-to-operate
analysis before even beginning to make a prod-
uct for market.
Global trends of gene and genome
IP practices
PlantgenepracticesinEuropemayvaryslightly,
as Europe’s IP laws are different. Under Articles
1–11 of Directive 98/44/EC of the European
Parliament and of the Council of 6 July 1998
on the legal protection of biotechnological
inventions, IP rights on plants are permissible
only when the invention covers plants in gen-
eral and regardless of the kind of plant variety,
so plant varieties as such are not a patentable
subject matter19. Diverse national policies have
been adopted worldwide to regulate IP rights
on plants and plant varieties (Supplementary
Table1),especiallyinjurisdictionswhereplants
are part of the country’s culture and basic food;
for example, in Asia specific provisions were
incorporated into national IP laws to render
rice a nonpatentable subject matter20.
Moreover, under Article 27.3 of the interna-
tional Agreement on Trade-Related Aspects
of Intellectual Property Rights (TRIPS), each
member government has the authority to pro-
vide its own sui generis IP systems to protect
plants or plant varieties as an alternative to util-
ity patents and carve exclusions21. Plant variety
protection, which is based on the International
Union for the Protection of New Varieties of
Plants (UPOV) guidelines, is a valid alterna-
tive used by many governments. Under UPOV,
members may, and in some cases have intro-
ducedexclusionssuchas“[i]exclusionofplants
from patent protection; [ii] exclusion of plant
varieties from patent protection; [iii] exclusions
of both plants and plant varieties from patent
protection; [iv] allowing the patentability of
plants, and [v] excluding or allowing the pat-
entability of essential biological process for the
production of plants.”20 Further discussions
on such flexibilities can be found in the docu-
ment prepared by the Secretariat of the World
IntellectualPropertyOrganization(WIPO)and
published at the 13th session of the Committee
on Development and Intellectual Property
(CDIP).
Conclusions
The restructuringofthecropagricultureindus-
try in the 1980s and 1990s and the strategic use
of patent rights enabled some large-scale patent
holders to exclude or deter others from using
critical research tools and materials14,22. This
legal and expected use—delaying or otherwise
limiting competitive products or follow-on
inventions—allowed a few corporations to
influence or control much of global agricultural
innovation, a situation that many find disquiet-
ing, and which may lie at the heart of the ongo-
ing resistance to new agricultural technologies.
Effortstoimprovethesystemtoincreasefair-
ness, relevance, diversity of participation and
trust must be based on sufficient transparency
to ensure evidence-based and inclusive policy
and practice.
For instance, plant-related gene patents
were fewer and harder to identify through
patent sequence analyses than human-related
gene patents, because many of the referenced
sequences in granted patents either did not
originate from a plant species or had artificial
or unspecified ‘declared species’ information
associated with them. Further examination of
this issue revealed inconsistencies in the pro-
vision of valid species information among the
various data sources. To remedy such a situa-
tion, parsers can capture other metadata related
to sequence origin; we intend to incorporate
this in new releases. Patent offices should do
likewise and enforce their requirement for such
disclosure.
Ourownershipanalysesofgenepatentsshow
that the public sector has been an active con-
tributor to the research, development and com-
mercialization of these three crops throughout
thepasttwodecades.Howeveritisunclearwhat
this limited ownership data means. Has owner-
ship been transferred outright and unrecorded?
Even if the data were open and comprehensive,
PAT E N T S
npg©2015NatureAmerica,Inc.Allrightsreserved.
NATURE BIOTECHNOLOGY VOLUME 33 NUMBER 10 NOVEMBER 2015	 1143
of biotechnological inventions. http://eur-lex.europa.
eu/legal-content/EN/TXT/?uri=CELEX:31998L0044
20.	WIPO Committee on Development and Intellectual
Property. Patent-related flexibilities in the multi-
lateral legal framework and their legislative imple-
mentation at the national and regional levels–Part
III. Thirteenth Session Geneva, May 19 to 23, 2014
CDIP/13/10, pages 7–10 (2014). http://www.wipo.
int/edocs/mdocs/mdocs/en/cdip_13/cdip_13_10.pdf
21.	Information and Media Relations Division of the WTO
Secretariat. Reviews, article  27.3(b) and related
issues: background and the current situation, http://
www.wto.org/english/tratop_e/trips_e/art27_3b_
background_e.htm (2008).
22.	Marco, A.C. & Rausser, G.C. The role of patent rights
in mergers: consolidation in plant biotechnology.
CUDARE Working Papers, 1036 (2007). http://
escholarship.org/uc/item/2dk2x9hm
23.	Fuglie, K. & Toole, A. Am. J. Agric. Econ. 96, 862–
883 (2014).
5.	World Intellectual Property Organization.
Questionnaire on exceptions and limitations to pat-
ent rights, http://www.wipo.int/scp/en/exceptions/
(2014).
6.	 Foote, H. International IP protection for plants
(American Intellectual Property Law Association,
2014). http://www.aipla.org/committees/com-
mittee_pages/Biotechnology/plant/Shared%20
Documents/5758773_1_International%20
IP%20Protection%20for%20Plants%20-%20
Humphrey%20Foote%20v2.docx
7. 	 Chinese Patent Guidelines Examination of 2010.
Chapter 1, Article 25.1(4) page 140. http://www.
wipo.int/edocs/lexdocs/laws/en/cn/cn079en.pdf
8.	 Jefferson, O.A. et al. Nat. Biotechnol. 31, 1086–
1093 (2013).
9. 	 Jefferson, O.A. et al. Nat. Biotechnol. 33, 1033–
1038 (2015).
10.	Assignment data accessible at http://www.google.
com/googlebooks/uspto-patents-assignments.html
or http://patents.reedtech.com/assignment.php
11.	Howard, P.H. Sustainability 1, 1266–1287 (2009).
12.	Atkinson, R.C. et al. Science 301, 174–175 (2003).
13.	Agris, C.H. Nat. Biotechnol. 17, 197–198 (1999).
14.	Moss, D.L. & Taylor, C.R. Wisconsin State L. Rev.
337, 338–367 (2014).
15.	Curtin, S.J., Voytas, D.F. & Stupar, R.M. Plant
Genome 5, 42–50 (2012).
16.	Ex parte Hibberd 227 USPQ 433 (1985).
17.	J.E.M. Ag Supply, Inc. et al. v. Pioneer Hi-Bred
International, Inc. 122 S. Ct. 593; 151 L. Ed. 2d
508.
18.	USDA National Genetic Resources Program.
Germplasm Resources Information Network (GRIN).
(National Germplasm Resources Laboratory,
Beltsville, Maryland) http://www.ars-grin.gov/npgs/
searchgrin.html (18 September 2014).
19.	European Parliament, Council of the European Union.
Directive 98/44/EC of the European Parliament and
of the Council of 6 July 1998 on the legal protection
PAT E N T S
npg©2015NatureAmerica,Inc.Allrightsreserved.

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ownership nbt.3393

  • 1. 1138 VOLUME 33 NUMBER 11 NOVEMBER 2015 NATURE BIOTECHNOLOGY Osmat A. Jefferson, Deniz Köllhofer, Thomas H. Ehrich and Richard A. Jefferson are at Queensland University of Technology, Brisbane, Australia, and at Cambia, Canberra, Australia. e-mail: osmat@cambia.org or raj@cambia.org bined the findings from all three genomes to check sequence or patent overlap and redundancy. Results show that only 24% (2,367 out of 9,838), 15% (1,190 out of 7,836) and 24% (2,595 out of 10,634) of the earlier accounted for as maize, rice and soybean referenced sequences, respectively, were actually used in plant-related inventions. These correspond to 846 maize-related patents, 493 rice-related patents and 638 soybean-related patents—or 1,633 granted patents in total, as we found some overlapping patents across the three data sets. The level of overlap among refer- enced sequences was 9% and redundancy was more than 30%, and only 10% of sequences comprised more than 50 base pairs. According to the US classification codes, in the hand-edited collection, 65% of inventions were related to the processes of introducing or rearranging a nucleic acid molecule into a plant cell or part, either as such or to develop a trans- genic plant or plant part; 48% were related to a plant per se (including a higher plant), seedling or plant seed or part; 45% were related to the useofvectorsfortheintroductionofexogenous nucleic acid molecules in host cells; and 33% were related to the transformed plant cell or cell line or to plant proteins used as compounds. Claim analysis, on the other hand, revealed clearer patterns of sequence use. Although sequence use was broadly similar in plant- and human-related inventions—on the basis of the categories identified in our human genome study8—in plant-related inventions, such use was more intertwined within a single patent document. For example, in US patent 8,692,076 (available at https://www.lens.org/ lens/patent/US_8692076_B2), the sequence identified as SEQ ID No: 1 was mentioned in claim 1 as part of a larger sequence and so would have been categorized as a “Subpart” in The ownership question of plant gene and genome intellectual properties Osmat A Jefferson, Deniz Köllhofer, Thomas H Ehrich & Richard A Jefferson The restructuring of the crop agriculture industry over the past two decades has enabled patent holders to exclude, prevent and deter others from using certain research tools and delay or block further follow-on inventions. The raging legal debates on the patent eli- gibility of genetic sequences extend from Europe, where in 2010 the European Court of Justice in Monsanto Technology LLC v. Cefetra BV held that protection for a pat- ent claiming a DNA sequence is limited by a “functionality” requirement as disclosed in the patent document1, to the United States, where from 2012 to 2013, the US Supreme Court in Association for Molecular Pathology v. Myriad Genetics, Inc.2 and Mayo Collaborative Services v. Prometheus Labs, Inc.3 upheld a shift in the broad scope of patentability of genetic sequences. In fact, owing to additional social and moral con- cerns over human or plant gene patents, governments of countries such as Brazil and China have also tried, either through court decisions and/or enacted policies, to shape their own standards within the international legal framework and their ability to restrict the patentability of subject matter—be it in medicine or industrial agriculture4,5. For example, Brazil allows the patenting of methods to transform plants and expression vectors containing heterologous sequences, but it does not allow the patenting of biologi- cal sequences isolated from plants or any parts of plants and plant varieties6. China allows the patenting of isolated sequences, modified sequences and transformed plant cells, but carves out exclusions to make all or part of plants and plant varieties unpatentable7. Thus, considering how divergent and complex the spectrum of interests in gene ­patenting is becoming and how limited is our understanding of the practices across various economies, we have designed and developed a dynamic platform, the patent sequence (PatSeq) toolkit, to render biological patents and their disclosed genetic sequences more publicly accessible and their contextual navi- gation more evidence based8. We recently reported9 on the mapping of patent-disclosed sequences onto three crop genomes(maize,riceandsoybean),theanalysis of overlapped sequences among plant and human genomes, and on the recently adopted changestothescopeofpatentabilityintroduced by the United State Patent and Trade Office (USPTO). Here, we hand edit each of the three plant genome patent sequence maps to identify sequences referenced in the claims of granted patents and analyze their corresponding patent ownership within the context of other plant intellectual property (IP) rights. We conclude by discussing the impact of the current per- ceptions of ownership on the industry and the public interests. Referenced sequences that may be related to plant inventions The task of determining which of the mapped sequences were referenced in plant-related inventions was challenging, as we could not rely on the original sequence source to identify relevant patent sequences. In addi- tion, and unfortunately, the majority of the referenced sequences in granted claims had non-plant origins or were unknown, unspeci- fied or artificial. We initially used US clas- sification codes to screen the corresponding patents and eliminate non-plant patents, then hand edited the data and analyzed broadly the claims to assemble inventions that can be related to plants or cover basic research topics that may be applied to plants. We then com- PATENTS npg©2015NatureAmerica,Inc.Allrightsreserved.
  • 2. NATURE BIOTECHNOLOGY VOLUME 33 NUMBER 10 NOVEMBER 2015 1139 the use of sequence as ‘isolated’ or in a vector; the use of the vector; and the use of geneti- cally modified host cells, host plant(s), seeds, progenies and methods to produce, detect and use such sequences. Method claims, be they to regulate plant gene expression, target genome changes or improve or manage crop yield by genetic engineering methods, were very common, as were claims covering basic core research technologies. To enable further technology landscaping of the data, we pro- vide the unedited raw sequences in PatSeq Explorer (https://www.lens.org/lens/bio/ patseqexplorer) and are happy to collaborate on the further analyses of the hand-edited ­collection of plant related inventions. Ownership of plant-related gene patents To disambiguate applicant and owner names in the hand-edited collection, we consulted the publicly available assignment data from the USPTO (ref. 10), curated and cleaned applicant data from the European Patent Office’s DOCDB database and further explored each company, including its name changes, acquisitions, mergers and joint ventures, through press releases, company websites and other publicly available data11. The cumbersome and incomplete process underlines an important need for a globally harmonized data set with persistent identi- fiers for patent ownership, including corpo- rate relationships that illuminate the ultimate owner of patents. The biggest lacuna in this analysis—the ‘elephant in the room’ of all patent analy- ses—is the absence in the public record of who owns the rights to a patent. Licensing information is rarely made public but would completely change the understanding of the state of competition and trust formation and the effectiveness of policy instruments, invest- ment tools and public science and technology expenditure priorities. In principle, virtually all analyses of patent control are confounded and could be misleading or completely incor- rect in the absence of comprehensive licens- ing information. If this is not made statutorily available, global innovation policy—in gene patenting and in all contentious and impor- tant domains of innovations—will be based on surmise and on the easy data, not the right data. Nonetheless, with the data that can readily be gleaned publicly, our analysis of mapped and referenced patent sequences across the three crop genomes revealed DuPont and its affiliates as the holder of the largest collection our human genome study. The same sequence is mentioned as the target of a detection assay in claim 3 and so would have been cat- egorized as a “Target” with respect to that claim. SEQ ID No: 1 then appears in claims 4, 7 and 12 as part of a genetically modified soybean plant or seed and so would have been categorized as “Alter phenotype” with respect to those claims. In other words, the same sequence would have been categorized three different ways for this patent, and this does not include claims that encompass the sequence without explicitly mentioning it, such as for example claim 8. Therefore, unlike in humans, granted claims covering plant- related genes or gene fragments comprised 0 100 200 Maize Rice Soybean 400 500 600 700 800 900 1,000 M onsanto DuPont U S university U S research instituteBayerBASF N ovartis Syngenta Lim agrain U S governm ent M onsanto DuPont U S university U S research instituteBayerBASF N ovartis Syngenta Lim agrain U S governm ent M onsanto DuPont U S university U S research instituteBayerBASF N ovartis Syngenta Lim agrain U S governm ent Sequences-GC Granted patents Sequenceorpatentnumber(plantrelated) Figure 1 Holdings of granted patents and their referenced sequences in the claims (GC) of the hand-edited plant-related collection, based on the edited applicant and owner data. Only the top 10 applicants are shown. Figure 2 Contribution of public and private sectors to maize, rice and soybean gene patenting activities from 1993–2014. Number of granted patents (a) or referenced sequences in granted claims (b) in the hand-edited plant-related collection, according to the mapping of patent sequences onto maize, rice and soybean genomes combined and their reference in granted claims. 0 200 400 600 800 1,000 1,200 1,400 1,600 Private sector (sequences-GC) Public sector (sequence-GC) 0 20 40 60 80 100 120 140 160 Private sector (patents) Public sector (patents) Publication yearPublication year Numberofgrantedpatentsinthe hand-editedplant-relatedcollection Numberofreferencedsequencesinthe hand-editedplantrelatedcollection 1993 1996 1999 2002 2005 2008 2011 20141993 1996 1999 2002 2005 2008 2011 2014 a b PAT E N T S npg©2015NatureAmerica,Inc.Allrightsreserved.
  • 3. 1140 VOLUME 33 NUMBER 11 NOVEMBER 2015 NATURE BIOTECHNOLOGY of gene patents. It holds more gene patents than Monsanto or the rest of the US indus- try—including small and medium biotech companies and governmental research insti- tutes and ­universities—put together (Fig. 1). We cannot ascertain that these results represent actual practices, as we have not accounted for the cross-licensing agreements that take place between various IP owners. The results also suggest that the public sector, which includes universities, government and research institutes, is active in plant-related gene patenting. So, to draw a larger perspec- tive on its contribution, we grouped our data on the basis of the affiliation of the applicant or owner—either to the public or the private sector—and plotted it against publication year (1993–2014). Similar grouping was also performed using the referenced sequence data. We found that the public sector’s activity in plant gene patenting has been signifi- cant throughout the past 22 years. At the early stage of biotechnology and biological research on these genomes, the public sec- tor’s contribution was 40–50% by 2000. Since then it has varied, between 12.5% (in 2005) and 27.9% (in 2014), with an average of 25% annual contribution, on the basis of the pat- ent holdings in the hand-edited collection (Fig. 2a). These findings are similar to what was reported in 2003 (ref. 12). However, as our results cover only three major agri- cultural crops and extend from the 1990s to 2014, they suggest a gradually widening gap in the ownership of plant gene patents between the private and public sectors. Again, this conclusion is subject to the caveats that assignments of public IP to private hands—or indeed exclusive licensing—are not typically a matter of public record. Upon using the referenced sequence hold- ings as a proxy to public sector’s contribu- tion to the inventions, we found that in the early stages of biotechnology and biological research, the public sector was less active than the private sector in capturing or refer- encing sequences in patent claims until 2005, when it started to reference a large number of sequences in patent claims (Fig. 2b), imply- ing the emergence of a convergent business model between the sectors in the past decade. Here also, we limited our analysis to plant- related gene patents, but to provide a broader 0 25 50 75 100 125 150 175 200 225 250 275 300 2014 2013 2012 2011 2010 2009 2008 2007 2006 2005 2004 2003 2002 2001 2000 1999 1998 1997 1996 1995 1994 1993 1992 1991 1990 0 25 50 75 100 125 150 175 200 225 250 275 300 a b c 0 10 20 30 40 50 Bayer Cropscience RiceTec Rice Researchers, Inc. Private industry-Japan Hisparroz Busch Agricultural Resources, Inc. Bunge Milling, Inc. Cooperative (farmers) Research institutes 1991 1994 1997 1999 2003 2005 2007 2012 2014 0 50 100 150 200 250 300 AgReliant Seed company-Pakistan Northstar Genetics Ltd. Agchemical company-Japan Dow Agrosciences Bayer Cropscience Cooperative-US Research institutes Syngenta DuPont Monsanto 1991 1993 1995 1997 1999 2001 2003 2005 2007 2009 2011 2014 Issueyear Number of issued PVP certificates Maize Rice Soybean Issueyear Number of issued PVP certificates Issueyear Number of issued PVP certificates Monsanto DuPont Syngenta Dow Agrosciences Research institutes-US Limagrain-BASF-AgReliant Individual Ingredion Family-owned company KWS Abbott & Cobb, Inc. Non-practicing entity Page’s Seeds ConAgra Foods Figure 3 PVP certificates issued for three major crop varieties, 1990–2014. Number of certificates issued for maize (a), rice (b) and soybean (c) varieties in the United States, based on USDA data18. PAT E N T S npg©2015NatureAmerica,Inc.Allrightsreserved.
  • 4. NATURE BIOTECHNOLOGY VOLUME 33 NUMBER 10 NOVEMBER 2015 1141 varieties can be protected by a specific plant patent under the Plant Patent Act of 1930 for asexually reproducible plants; by a plant variety protection (PVP) certificate under the Plant Variety Protection Act of 1970 for sexually reproducible plants or tuber-propa- gated plant varieties; or, since 1985, by utility patents16. Because several types of protection can be granted at the same time—for example, either a plant patent or a PVP certificate with a util- ity patent—and exclusive rights extend for 20 years, any IP right holder on any of the crops can in principle benefit not only by enforcing their IP rights but also by holding off competition in the market and potentially delaying innovation on certain technologies, especially when the granted rights are under utility patents17. Utility patents have a broader scope, including protection on the plant itself, its diverse uses, its progenies and the method used to produce it, and they have an impact on follow-on innovations. To examine utility patent holdings and PVP certificates issued on maize, rice and soybean, we requested and received records on plant variety certificates issued on each of the three crops from the United States Department of Agriculture18 and created utility patent col- lections in the Lens, using US classification codes for maize (800/320.1), rice (800/320.2) and soybean (800/312). In addition, for each data set we hand-edited and disambiguated the names of applicants or owners and plotted patent and certificate holdings on the basis of the date issued (for certificates) or the fil- ing year (for utility patents). We found that between 31 August 1990 and 19 September 2014, a total of 1,963; 111; and 1,991 PVP cer- tificates were issued on maize, rice and soy- bean varieties, respectively, and 3,566; 409; and 2,967 utility patents were granted on each crop, respectively. Plotting PVP and patent holdings over the past 25 years confirms that DuPont and Monsanto, including their published subsid- iaries and acquisitions, have held a dominant position over maize and soybean genome IP over time, followed by Syngenta and BASF (Figs. 3 and 4). The data also show that the major IP holders were involved in IP acquisi- tions as early as 1990 and that although the number of holdings was increasing, a gap was forming between these entities and other applicants and owners (Figs. 3a,c and 4a,c) in that industry, confirming a gradual consolida- tion of IP in a few key players. By 2008–2010, small or individual owners appear to have been almost nonexistent. In rice, trends were slightly different. With fewer holdings in both PVP and utility patents view of current maize, rice and soybean IP practices, we extended the analysis to include those on utility patents that target genomes rather than genes and other IP data such as that on plant variety protection certificates. Currently, various legal regimes are available to protect plants13, the industry is heavily concentrated14 and old gene technologies are evolving into genome-based modifica- tion technologies15, particularly in the United States, where applicants can double protect a plant genome. Genome IP practices in the United States Uniquely in the United States, plants and their products can be protected by patents and by other IP mechanisms at the same time. Plant Figure 4 Utility patents issued from 1990 to 2014. Utility patents issued on maize (a), rice (b) and soybean (c) plants, based on searches for US classification codes 800/320.1 (maize), 800/320.2 (rice) and 800/312 (soybean). 0 25 50 75 100 125 150 175 200 225 250 1992 1994 1996 1998 2000 2002 2004 2006 2008 2010 2012 Numberofutilitypatentsissued Filing year a b Posco Nunza Nestle Metabolix Inc. Mendel Biotechnology Inc. Horizon Seed Technologies Genomine Inc. Evogene Ltd. Enza Zaden BV Crookham Co. Chromatin Inc. Cerrado Natural Systems Group Boehringer Ingelheim Barkley Seeds Inc. Applied Biotechnology Institute Agrisoma Biosciences Inc. Acaabco Holdings LLC Abbott Labs Suntava LLC Prodigene Inc. Nutropia Plant Sensory Systems LLC Eisai Brownseed Genetics Inc. Academia Sinica Japan Tabacco Inc. Ceres Inc. Stine Seed Co. Nonpracticing entity Ingredion Inc. Cooperatives Limagrain KWS Bayer Cropscience BASF Research institutes Dow Agrosciences Syngenta Monsanto DuPont 0 25 50 75 100 125 150 175 200 225 250 1992 1994 1996 1998 2000 2002 2004 2006 2008 2010 2012 Numberofutilitypatentsissued Filing year Yeda Research and Development Yan's Heterosis and Herbicide, Inc. Suntory Holdings Ltd. Plantechno Nutropia Nunhems BV Nestle MPG Cologne Metanomics Merck & Co. KWS Korea Kumho Petrochemical Co. Inc. Admin Agency Naro Genoplante Valor Enza Zaden Beheer BV Corn Products Development, Inc. Avestha Gengraine Technologies Pvt.. Ltd. British American Tobacco Ltd. Ceres Inc. Eisai Ventria Bioscience Limagrain Academia Sinica Nonpracticing entity Japan Tobacco Inc. Dow Agrosciences Syngenta R T AG Bayer Cropscience Monsanto BASF DuPont Research institutes 0 25 50 75 100 125 150 175 200 225 250 1994 1996 1998 2000 2002 2004 2006 2008 2010 2012 2014 Numberofutilitypatentsissued Filing year TMG Suntory Holdings Ltd. Soymeds Schillinger Seed Royster Clark Inc. Plantechno Individual Evolutionary Genomics Evogene Ltd. DLF Trifolium Chromatin Inc. Chemtura Corporation Agrisoma Biosciences Inc. Abbott Labs Nutropia Nestle Sembiosys Genetics Inc. Nonpracticing entity Metabolix Mark Seed Company Limagrain Ceres Inc. Bayer Cropscience Diamond V Mills Co. Dow Agrosciences BASF Stine Seed Co. MS Technologies LLC Research institutes Merschman Seeds Inc. Syngenta DuPont Monsanto c PAT E N T S npg©2015NatureAmerica,Inc.Allrightsreserved.
  • 5. 1142 VOLUME 33 NUMBER 11 NOVEMBER 2015 NATURE BIOTECHNOLOGY it would not be enough. The power of a patent lies in the rights to exclude, or not be excluded, and these rights can be transferred separately from ownership in the form of a license. A critical policy imperative should mandate public disclosure and recordation of licens- ing status of patents derived from such public research, or conducted by public institutions under contract. Only then can we sensibly assess the degree of compliance with public goals, or capture by private interests, and take evidence-based steps to improve the desired outcomes. Aspublicinvestmentincropagriculturecon- tinuestostagnate23,thepublicinnovationspace risks capture by private interests, and moving away from modest market and margins, or innovations with many but diffuse beneficia- ries, such as those promoting environmental benefit, focusing rather on financially valuable inventions with high-value capture potential. This outcome would be of questionable desir- ability for goals of diversification and resilience and could affect many economies, environ- ments and communities. Only through dramatic improvements in transparency—of patent meaning, of patent ownership, of license status and of placement of patent rights in the context of innovation knowledge—can the full potential of science and technology in agricultural innovation be reached, with the broadest canvas of ideas, par- ticipants and public support. Note: Any Supplementary Information and Source Data files are available in the online version of the paper (doi:10.1038/nbt.3393). ACKNOWLEDGMENTS We thank I. Medina (University of Cambridge) for ongoing support of Genome Maps and making the crop genomes available in Cellbase; P. Howard (Michigan State University) for sharing data on the changes of ownership in the US agriculture seed industry from 1996 to 2013; the Lens team at Cambia for continually improving the Lens features; and Small Multiples (Sydney) for help in improving the standalone PatSeq toolkit. We are particularly grateful for review by S. Hughes at the early stages of this project. This work was supported, in part, by the Bill & Melinda Gates Foundation 2013 Global Health Grant–Cambia Lens Accelerated Grant OPP1104285 (R.A.J.); Gordon and Betty Moore Foundation Grant GBMF 3465 (R.A.J.) and Queensland University Technology Grant 321121- 0023/08 (O.A.J.). COMPETING FINANCIAL INTERESTS The authors declare no competing financial interests. 1. Monsanto Technology LLC v. Cefetra BV and Others. ECJ Case C-428/08. 2. Association for Molecular Pathology, et al. v. Myriad Genetics, Inc., et al. 569 US 12–398 (2013). 3. Mayo Collaborative Services v. Prometheus Labs, Inc. 566 US ___, 132 S. Ct. 1289 (2012). 4. Abbott, F.M., Correa, C.M. & Drahos, P. in Emerging Markets and World Patent Order (eds. Abbott, F.M. et al.) 3–32 (Edward Elgar Publishing, 2014). than for maize or soybean, rice showed a more diversesetofapplicants.Itseemsthatfrom2003 onward,researchinstitutesandfarmercoopera- tives have been more engaged in acquiring PVP certificates than have DuPont or Monsanto, for example (Fig. 3b). However, DuPont has remained active in acquiring utility patents on ricesince1996,as faras the public recordsshow (Fig. 4b). Complementing these results with those obtained from ownership analysis of the hand- edited plant-related collection re-asserts the dominant role of DuPont and its affiliates in plant-related IP portfolio globally, followed by the US industry, which includes small biotech companies, governmental research institutes and universities, and then by Monsanto and its affiliates. These results may or may not represent actual practices; as discussed above, patent owners are not legally required to disclose reas- signment or licensing data to the patent office. The public can see only the information that a patent owner chooses to provide. For example, a large biotech could license all or part of its patent portfolio to another large biotech, which couldinturnsublicenseittoasmallercompany. A young entrepreneur interested in that collec- tion of patents could spend huge sums on law- yer’s fees for investigating the true ownership of eachpatentordevelopingafreedom-to-operate analysis before even beginning to make a prod- uct for market. Global trends of gene and genome IP practices PlantgenepracticesinEuropemayvaryslightly, as Europe’s IP laws are different. Under Articles 1–11 of Directive 98/44/EC of the European Parliament and of the Council of 6 July 1998 on the legal protection of biotechnological inventions, IP rights on plants are permissible only when the invention covers plants in gen- eral and regardless of the kind of plant variety, so plant varieties as such are not a patentable subject matter19. Diverse national policies have been adopted worldwide to regulate IP rights on plants and plant varieties (Supplementary Table1),especiallyinjurisdictionswhereplants are part of the country’s culture and basic food; for example, in Asia specific provisions were incorporated into national IP laws to render rice a nonpatentable subject matter20. Moreover, under Article 27.3 of the interna- tional Agreement on Trade-Related Aspects of Intellectual Property Rights (TRIPS), each member government has the authority to pro- vide its own sui generis IP systems to protect plants or plant varieties as an alternative to util- ity patents and carve exclusions21. Plant variety protection, which is based on the International Union for the Protection of New Varieties of Plants (UPOV) guidelines, is a valid alterna- tive used by many governments. Under UPOV, members may, and in some cases have intro- ducedexclusionssuchas“[i]exclusionofplants from patent protection; [ii] exclusion of plant varieties from patent protection; [iii] exclusions of both plants and plant varieties from patent protection; [iv] allowing the patentability of plants, and [v] excluding or allowing the pat- entability of essential biological process for the production of plants.”20 Further discussions on such flexibilities can be found in the docu- ment prepared by the Secretariat of the World IntellectualPropertyOrganization(WIPO)and published at the 13th session of the Committee on Development and Intellectual Property (CDIP). Conclusions The restructuringofthecropagricultureindus- try in the 1980s and 1990s and the strategic use of patent rights enabled some large-scale patent holders to exclude or deter others from using critical research tools and materials14,22. This legal and expected use—delaying or otherwise limiting competitive products or follow-on inventions—allowed a few corporations to influence or control much of global agricultural innovation, a situation that many find disquiet- ing, and which may lie at the heart of the ongo- ing resistance to new agricultural technologies. Effortstoimprovethesystemtoincreasefair- ness, relevance, diversity of participation and trust must be based on sufficient transparency to ensure evidence-based and inclusive policy and practice. For instance, plant-related gene patents were fewer and harder to identify through patent sequence analyses than human-related gene patents, because many of the referenced sequences in granted patents either did not originate from a plant species or had artificial or unspecified ‘declared species’ information associated with them. Further examination of this issue revealed inconsistencies in the pro- vision of valid species information among the various data sources. To remedy such a situa- tion, parsers can capture other metadata related to sequence origin; we intend to incorporate this in new releases. Patent offices should do likewise and enforce their requirement for such disclosure. Ourownershipanalysesofgenepatentsshow that the public sector has been an active con- tributor to the research, development and com- mercialization of these three crops throughout thepasttwodecades.Howeveritisunclearwhat this limited ownership data means. Has owner- ship been transferred outright and unrecorded? Even if the data were open and comprehensive, PAT E N T S npg©2015NatureAmerica,Inc.Allrightsreserved.
  • 6. NATURE BIOTECHNOLOGY VOLUME 33 NUMBER 10 NOVEMBER 2015 1143 of biotechnological inventions. http://eur-lex.europa. eu/legal-content/EN/TXT/?uri=CELEX:31998L0044 20. WIPO Committee on Development and Intellectual Property. Patent-related flexibilities in the multi- lateral legal framework and their legislative imple- mentation at the national and regional levels–Part III. Thirteenth Session Geneva, May 19 to 23, 2014 CDIP/13/10, pages 7–10 (2014). http://www.wipo. int/edocs/mdocs/mdocs/en/cdip_13/cdip_13_10.pdf 21. Information and Media Relations Division of the WTO Secretariat. Reviews, article  27.3(b) and related issues: background and the current situation, http:// www.wto.org/english/tratop_e/trips_e/art27_3b_ background_e.htm (2008). 22. Marco, A.C. & Rausser, G.C. The role of patent rights in mergers: consolidation in plant biotechnology. CUDARE Working Papers, 1036 (2007). http:// escholarship.org/uc/item/2dk2x9hm 23. Fuglie, K. & Toole, A. Am. J. Agric. Econ. 96, 862– 883 (2014). 5. World Intellectual Property Organization. Questionnaire on exceptions and limitations to pat- ent rights, http://www.wipo.int/scp/en/exceptions/ (2014). 6. Foote, H. International IP protection for plants (American Intellectual Property Law Association, 2014). http://www.aipla.org/committees/com- mittee_pages/Biotechnology/plant/Shared%20 Documents/5758773_1_International%20 IP%20Protection%20for%20Plants%20-%20 Humphrey%20Foote%20v2.docx 7. Chinese Patent Guidelines Examination of 2010. Chapter 1, Article 25.1(4) page 140. http://www. wipo.int/edocs/lexdocs/laws/en/cn/cn079en.pdf 8. Jefferson, O.A. et al. Nat. Biotechnol. 31, 1086– 1093 (2013). 9. Jefferson, O.A. et al. Nat. Biotechnol. 33, 1033– 1038 (2015). 10. Assignment data accessible at http://www.google. com/googlebooks/uspto-patents-assignments.html or http://patents.reedtech.com/assignment.php 11. Howard, P.H. Sustainability 1, 1266–1287 (2009). 12. Atkinson, R.C. et al. Science 301, 174–175 (2003). 13. Agris, C.H. Nat. Biotechnol. 17, 197–198 (1999). 14. Moss, D.L. & Taylor, C.R. Wisconsin State L. Rev. 337, 338–367 (2014). 15. Curtin, S.J., Voytas, D.F. & Stupar, R.M. Plant Genome 5, 42–50 (2012). 16. Ex parte Hibberd 227 USPQ 433 (1985). 17. J.E.M. Ag Supply, Inc. et al. v. Pioneer Hi-Bred International, Inc. 122 S. Ct. 593; 151 L. Ed. 2d 508. 18. USDA National Genetic Resources Program. Germplasm Resources Information Network (GRIN). (National Germplasm Resources Laboratory, Beltsville, Maryland) http://www.ars-grin.gov/npgs/ searchgrin.html (18 September 2014). 19. European Parliament, Council of the European Union. Directive 98/44/EC of the European Parliament and of the Council of 6 July 1998 on the legal protection PAT E N T S npg©2015NatureAmerica,Inc.Allrightsreserved.