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Tutorial: 
Searching on NRDR 2.0
This tutorial shows you how to perform the following 4 
searches in NRDR 2.0: 
• Searching siRNAs involved in Cancer 
• Searching human miRNAs in databases with similarity 
search tool 
• Searching databases containing FASTA files for 
download 
• Downloading all sequences available for Arabidopsis 
thaliana
Example 1 
Searching siRNAs involved in Cancer 
* Speficy cancer as a word in Overview
Example 1 
Searching siRNAs involved in Cancer 
* Select siRNA as ncRNA class
* Click here to continue 
Example 1 
Searching siRNAs involved in Cancer
Example 1 
Searching siRNAs involved in Cancer 
You should see something like this:
Example 1 
Searching siRNAs involved in Cancer 
You should see something like this: 
* Click here to see more 
information about this
Example 2 
Searching human miRNAs in databases with similarity 
search tool 
* Specify Homo sapiens as organism
Example 2 
Searching human miRNAs in databases with similarity 
search tool 
* Select miRNA as ncRNA class
Example 2 
Searching human miRNAs in databases with similarity 
search tool 
* Specify Similarity as search method
Example 2 
Searching human miRNAs in databases with similarity 
search tool 
* Click here to continue
Example 2 
Searching human miRNAs in databases with similarity 
search tool 
You should see something like this:
Example 3 
Searching databases containing FASTA files for 
download 
* Only specify FASTA in download type
* Click here to continue 
Example 3 
Searching databases containing FASTA files for 
download
Example 3 
Searching databases containing FASTA files for 
download 
You should see something like this:
Example 4 
Downloading all sequences available for Arabidopsis 
thaliana 
* Click on Download at the Main menu
Example 4 
Downloading all sequences available for Arabidopsis 
thaliana 
* Specify Arabidopsis thaliana as your organism
Thank You! 
For feedback, comments, suggestions or criticisms please 
contact us at: paschoal AT utfpr.edu.br

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NRDR 2.0 Tutorial - The Non-Coding RNA Databases Resource Tutorial

  • 2. This tutorial shows you how to perform the following 4 searches in NRDR 2.0: • Searching siRNAs involved in Cancer • Searching human miRNAs in databases with similarity search tool • Searching databases containing FASTA files for download • Downloading all sequences available for Arabidopsis thaliana
  • 3. Example 1 Searching siRNAs involved in Cancer * Speficy cancer as a word in Overview
  • 4. Example 1 Searching siRNAs involved in Cancer * Select siRNA as ncRNA class
  • 5. * Click here to continue Example 1 Searching siRNAs involved in Cancer
  • 6. Example 1 Searching siRNAs involved in Cancer You should see something like this:
  • 7. Example 1 Searching siRNAs involved in Cancer You should see something like this: * Click here to see more information about this
  • 8. Example 2 Searching human miRNAs in databases with similarity search tool * Specify Homo sapiens as organism
  • 9. Example 2 Searching human miRNAs in databases with similarity search tool * Select miRNA as ncRNA class
  • 10. Example 2 Searching human miRNAs in databases with similarity search tool * Specify Similarity as search method
  • 11. Example 2 Searching human miRNAs in databases with similarity search tool * Click here to continue
  • 12. Example 2 Searching human miRNAs in databases with similarity search tool You should see something like this:
  • 13. Example 3 Searching databases containing FASTA files for download * Only specify FASTA in download type
  • 14. * Click here to continue Example 3 Searching databases containing FASTA files for download
  • 15. Example 3 Searching databases containing FASTA files for download You should see something like this:
  • 16. Example 4 Downloading all sequences available for Arabidopsis thaliana * Click on Download at the Main menu
  • 17. Example 4 Downloading all sequences available for Arabidopsis thaliana * Specify Arabidopsis thaliana as your organism
  • 18. Thank You! For feedback, comments, suggestions or criticisms please contact us at: paschoal AT utfpr.edu.br