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Comparing Data Accuracy between
Structured Abstracts and
Full-text Journal Articles:
Implications in its Use for Informing
Clinical Decisions
Raymond Sarmiento, MD
National Library of Medicine
NLM Informatics Training Conference 2013
19 June 2013
Using Abstracts to Improve
Clinical Decision-Making
• Clinicians will use evidence when convenient.
– Although some indicated that “accumulated knowledge” was
sufficient to respond to patient management questions, in most
instances (83% of cases) they still sought medical literature
• The accuracy of decisions improved after the provision of evidence
for both abstracts and full text.
• The average improvement across departments was not significantly
different between the abstracts-only group and the full-text group.
A comparison of the accuracy of clinical decisions based on full-text articles and on journal abstracts alone: a
study among residents in a tertiary care hospital. Evid Based Med; 2012 Jul 10. PMID: 22782923
BACKGROUND
• Clinicians and other healthcare practitioners frequently
rely exclusively on abstracts due to lack of time to read the
full-text article, poor critical appraisal skills, or limited
access to full-text articles especially in resource-
constrained settings.
• But there are inherent problems to this approach because
dependence on abstracts alone assumes that it is
complete and accurate.
• Incorrect reporting of data in the abstract could bias the
reader and lead to misinterpretation of research findings.
BACKGROUND
• In order to make the abstract more informative and minimize
inaccuracies between the abstract and the full-text, most
journals have adopted the use of structured abstracts.
• However, even with structured abstracts, a persistence of
inaccurate data in the abstracts (18% to 68%) was found in six
general medical journals. (Pitkin RM, Branagan MA, Burmeister LF. Accuracy of data in abstracts of published research articles.
JAMA 1999;281(12):1110-1111.)
• At least 25% of manuscripts returned after revision were
comprised of data in the abstracts that were unverifiable in
the full-text. (Pitkin RM, Branagan MA. Can The Accuracy of Abstracts be Improved by Providing Specific Instructions? A randomized controlled trial. JAMA
1998;280:267-269.)
BACKGROUND
• “Spin” was found in the Results (37.5%) and
Conclusions (58.3%) sections of abstracts of
published RCT reports in 2006
 “Spin” was defined as reporting strategies that emphasize
the beneficial effect of the experimental treatment even
with statistically non-significant primary outcomes or divert
the reader from results with no statistical significance
Boutron I, Dutton S, Ravaud P, Altman DG. Reporting and interpretation of randomized controlled trials with
statistically nonsignificant results for primary outcomes. JAMA 2010;303: 2058–2064.
OBJECTIVES
• To determine the accuracy of data contained in
structured abstracts and its usefulness for guiding clinical
decisions
 Do the data in the structured abstract accurately reflect what is
found in the full text? Are the numbers reported in the
structured abstract the same as in the full text?
 If there is a discrepancy in the data between the structured
abstract and full text, is it clinically significant?
 Could the structured abstract alone be an adequate guide for
clinical decision-making?
METHODS
• 60 articles listed as the “most read”, “most cited”, or
“most e-mailed” were selected from six clinical
journals (between February 11 to March 14, 2011)
 American Journal of Emergency Medicine
 British Medical Journal
 Journal of the American Medical Association
 Lancet
 New England Journal of Medicine
 Obstetrics and Gynecology
Criteria for Evaluation
• Structured abstracts were considered inaccurate or contained a
discrepancy if they contained data that were either inconsistent or
missing in the full-text article.
• A discrepancy was evaluated as:
 clinically significant
 data that would require a clinical response or action if encountered in a
clinical setting
 misleading
 would result in any misinterpretation of the conclusions of the study
 misinterpretation of statistically significant results as not significant
intervention effects, either neutral or non-beneficial
 misinterpretation of statistically not significant results as showing
comparable effectiveness or equivalence of treatment
 clinically NOT significant
RESULTS
• High median impact factor = 37.99
• No significant relationship between the journal
that published the article and whether an article
contained discrepancies (Fisher's exact p-value =
0.3405)
• High agreement among the three evaluators
(Fleiss kappa coefficient = 0.869; z=12, p=0.001)
RESULTS
Table 1. Number and Percentages of Articles With and Without Discrepancies (n=60)
Journal WITH discrepancy
(% of total articles)
WITHOUT discrepancy
(% of total articles)
A 5 (8.33%) 5 (8.33%)
B 2 (3.33%) 8 (13.33%)
C 6 (10.00%) 4 (6.67%)
D 6 (10.00%) 4 (6.67%)
E 7 (11.67%) 3 (5.00%)
F 6 (10.00%) 4 (6.67%)
TOTAL 32
(53.33%)
28 (46.67%)
RESULTS
Table 2. Comparison of Data Accuracy in Structured Abstracts vs. Full-Texts (n=60)
Section Discrepancy (%) Clinically not
significant
discrepancy (%)
Clinically significant
discrepancy (%)
No discrepancy (%)
Introduction 4 (6.67 %) 4 (6.67%) 0 (0.00%) 56 (93.33%)
Methods 8 (13.33 %) 8 (13.33%) 0 (0.00%) 52 (86.67%)
Results 27
(45.00 %)
26 (43.33%) 1 (1.67%) 33 (55.00%)
Discussion 2 (3.33 %) 2 (3.33%) 0 (0.00%) 58 (96.67%)
RESULTS
Table 3. Summary of Discrepancies Found Between Structured Abstract
and Full-Text (n=60)
Type of Discrepancy List of Discrepancies Found in
Structured Abstract
Number of Articles with
Specific Discrepancy (%)
Clinically significant
discrepancy
Misinterpretation of significant intervention effects 1 (1.67%)
Clinically not significant
discrepancy
Incomplete listing of study objectives 1 (1.67%)
Setting of study mentioned in abstract but not
explicitly mentioned in full text
1 (1.67%)
Incomplete listing of study limitations 1 (1.67%)
Discrepancy in terminology definitions 2 (3.33%)
Inconsistent comparison of methods used 1 (1.67%)
Incomplete explanation of experimental correlations 1 (1.67%)
Inconsistent rounding off of numbers or percentages 2 (3.33%)
Numerical data or percentages did not match 7 (11.67%)
Numerical data or calculations found in abstract but
not explicitly mentioned in full text
**recalculations were done to determine if those found in the abstract
matched with the numbers in the full-text
24
(40.00%)
CONCLUSIONS
• The inaccuracies do not seem to affect the
conclusion and overall interpretation of the
article.
• It is crucial that a high standard of quality for
published abstracts is present.
69% of clinicians use abstracts only in seeking
answers to clinical questions. (Marcelo et al.. A comparison of the accuracy of clinical decisions based
on full-text articles and on journal abstracts alone: a study among residents in a tertiary care hospital. Evid Based Med Published Online First: 10 Jul 2012. doi:10.1136/eb-2012-
100537.)
CONCLUSIONS
• Overall, we observed that the structured
abstracts were still appropriate surrogates of full-
text articles and may be another reliable
resource for clinicians.
• Clinicians must also remember that one abstract
alone may not be enough in making clinical
decisions.
– need to consider the web application “Consensus
Abstracts.”
CONSENSUS ABSTRACTS
go.usa.gov/xF0
http://pubmedhh.nlm.nih.gov/consensus.php
LIMITATIONS
• The journal articles selected may not be
representative of all scientific articles in the medical
literature.
• The small sample of articles examined limits the
generalizability of the findings in this study.
• Follow-up study to include unstructured abstracts is
needed.
Acknowledgments
Questions or Comments?
Raymond Sarmiento, MD
National Library of Medicine
National Institutes of Health
Bethesda, Maryland
sarmientorr@mail.nlm.nih.gov

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Comparing data accuracy between structured abstracts and full-text journal articles: implications in their use for informing clinical decisions

  • 1. Comparing Data Accuracy between Structured Abstracts and Full-text Journal Articles: Implications in its Use for Informing Clinical Decisions Raymond Sarmiento, MD National Library of Medicine NLM Informatics Training Conference 2013 19 June 2013
  • 2. Using Abstracts to Improve Clinical Decision-Making • Clinicians will use evidence when convenient. – Although some indicated that “accumulated knowledge” was sufficient to respond to patient management questions, in most instances (83% of cases) they still sought medical literature • The accuracy of decisions improved after the provision of evidence for both abstracts and full text. • The average improvement across departments was not significantly different between the abstracts-only group and the full-text group. A comparison of the accuracy of clinical decisions based on full-text articles and on journal abstracts alone: a study among residents in a tertiary care hospital. Evid Based Med; 2012 Jul 10. PMID: 22782923
  • 3.
  • 4. BACKGROUND • Clinicians and other healthcare practitioners frequently rely exclusively on abstracts due to lack of time to read the full-text article, poor critical appraisal skills, or limited access to full-text articles especially in resource- constrained settings. • But there are inherent problems to this approach because dependence on abstracts alone assumes that it is complete and accurate. • Incorrect reporting of data in the abstract could bias the reader and lead to misinterpretation of research findings.
  • 5. BACKGROUND • In order to make the abstract more informative and minimize inaccuracies between the abstract and the full-text, most journals have adopted the use of structured abstracts. • However, even with structured abstracts, a persistence of inaccurate data in the abstracts (18% to 68%) was found in six general medical journals. (Pitkin RM, Branagan MA, Burmeister LF. Accuracy of data in abstracts of published research articles. JAMA 1999;281(12):1110-1111.) • At least 25% of manuscripts returned after revision were comprised of data in the abstracts that were unverifiable in the full-text. (Pitkin RM, Branagan MA. Can The Accuracy of Abstracts be Improved by Providing Specific Instructions? A randomized controlled trial. JAMA 1998;280:267-269.)
  • 6. BACKGROUND • “Spin” was found in the Results (37.5%) and Conclusions (58.3%) sections of abstracts of published RCT reports in 2006  “Spin” was defined as reporting strategies that emphasize the beneficial effect of the experimental treatment even with statistically non-significant primary outcomes or divert the reader from results with no statistical significance Boutron I, Dutton S, Ravaud P, Altman DG. Reporting and interpretation of randomized controlled trials with statistically nonsignificant results for primary outcomes. JAMA 2010;303: 2058–2064.
  • 7. OBJECTIVES • To determine the accuracy of data contained in structured abstracts and its usefulness for guiding clinical decisions  Do the data in the structured abstract accurately reflect what is found in the full text? Are the numbers reported in the structured abstract the same as in the full text?  If there is a discrepancy in the data between the structured abstract and full text, is it clinically significant?  Could the structured abstract alone be an adequate guide for clinical decision-making?
  • 8. METHODS • 60 articles listed as the “most read”, “most cited”, or “most e-mailed” were selected from six clinical journals (between February 11 to March 14, 2011)  American Journal of Emergency Medicine  British Medical Journal  Journal of the American Medical Association  Lancet  New England Journal of Medicine  Obstetrics and Gynecology
  • 9. Criteria for Evaluation • Structured abstracts were considered inaccurate or contained a discrepancy if they contained data that were either inconsistent or missing in the full-text article. • A discrepancy was evaluated as:  clinically significant  data that would require a clinical response or action if encountered in a clinical setting  misleading  would result in any misinterpretation of the conclusions of the study  misinterpretation of statistically significant results as not significant intervention effects, either neutral or non-beneficial  misinterpretation of statistically not significant results as showing comparable effectiveness or equivalence of treatment  clinically NOT significant
  • 10. RESULTS • High median impact factor = 37.99 • No significant relationship between the journal that published the article and whether an article contained discrepancies (Fisher's exact p-value = 0.3405) • High agreement among the three evaluators (Fleiss kappa coefficient = 0.869; z=12, p=0.001)
  • 11. RESULTS Table 1. Number and Percentages of Articles With and Without Discrepancies (n=60) Journal WITH discrepancy (% of total articles) WITHOUT discrepancy (% of total articles) A 5 (8.33%) 5 (8.33%) B 2 (3.33%) 8 (13.33%) C 6 (10.00%) 4 (6.67%) D 6 (10.00%) 4 (6.67%) E 7 (11.67%) 3 (5.00%) F 6 (10.00%) 4 (6.67%) TOTAL 32 (53.33%) 28 (46.67%)
  • 12. RESULTS Table 2. Comparison of Data Accuracy in Structured Abstracts vs. Full-Texts (n=60) Section Discrepancy (%) Clinically not significant discrepancy (%) Clinically significant discrepancy (%) No discrepancy (%) Introduction 4 (6.67 %) 4 (6.67%) 0 (0.00%) 56 (93.33%) Methods 8 (13.33 %) 8 (13.33%) 0 (0.00%) 52 (86.67%) Results 27 (45.00 %) 26 (43.33%) 1 (1.67%) 33 (55.00%) Discussion 2 (3.33 %) 2 (3.33%) 0 (0.00%) 58 (96.67%)
  • 13. RESULTS Table 3. Summary of Discrepancies Found Between Structured Abstract and Full-Text (n=60) Type of Discrepancy List of Discrepancies Found in Structured Abstract Number of Articles with Specific Discrepancy (%) Clinically significant discrepancy Misinterpretation of significant intervention effects 1 (1.67%) Clinically not significant discrepancy Incomplete listing of study objectives 1 (1.67%) Setting of study mentioned in abstract but not explicitly mentioned in full text 1 (1.67%) Incomplete listing of study limitations 1 (1.67%) Discrepancy in terminology definitions 2 (3.33%) Inconsistent comparison of methods used 1 (1.67%) Incomplete explanation of experimental correlations 1 (1.67%) Inconsistent rounding off of numbers or percentages 2 (3.33%) Numerical data or percentages did not match 7 (11.67%) Numerical data or calculations found in abstract but not explicitly mentioned in full text **recalculations were done to determine if those found in the abstract matched with the numbers in the full-text 24 (40.00%)
  • 14. CONCLUSIONS • The inaccuracies do not seem to affect the conclusion and overall interpretation of the article. • It is crucial that a high standard of quality for published abstracts is present. 69% of clinicians use abstracts only in seeking answers to clinical questions. (Marcelo et al.. A comparison of the accuracy of clinical decisions based on full-text articles and on journal abstracts alone: a study among residents in a tertiary care hospital. Evid Based Med Published Online First: 10 Jul 2012. doi:10.1136/eb-2012- 100537.)
  • 15. CONCLUSIONS • Overall, we observed that the structured abstracts were still appropriate surrogates of full- text articles and may be another reliable resource for clinicians. • Clinicians must also remember that one abstract alone may not be enough in making clinical decisions. – need to consider the web application “Consensus Abstracts.”
  • 17. LIMITATIONS • The journal articles selected may not be representative of all scientific articles in the medical literature. • The small sample of articles examined limits the generalizability of the findings in this study. • Follow-up study to include unstructured abstracts is needed.
  • 19. Questions or Comments? Raymond Sarmiento, MD National Library of Medicine National Institutes of Health Bethesda, Maryland sarmientorr@mail.nlm.nih.gov

Editor's Notes

  1. We extracted, stored and analyzed the data using the IMRAD format for structured abstracts as a model Differences in assessments were resolved through consensus
  2. The proportions of articles containing deficiencies were compared across journals using the Fisher’s exact test. We attempted to determine whether there was a significant relationship between the journal that published the article and whether an article contained discrepancies.
  3. Data inaccuracies were observed in 53.33% articles ranging from 3.33% to 45.00% based on the IMRAD format sections. The Results section showed the highest discrepancies (45.00%) although these were deemed to be mostly not significant clinically except in one.
  4. The two most common discrepancies were mismatched numbers or percentages (11.67%) and numerical data or calculations found in structured abstracts but not mentioned in the full-text (40.00%).
  5. The inaccuracies do not seem to affect the conclusion and interpretation overall. Structured abstracts were deemed informative and may be useful to practitioners as another resource for guiding clinical decisions.