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DANIEL MADRID
MARTHA FLÓREZ
INTRODUCTION
VIRUS
Mumps virus is a nonsegmented, negative stranded RNA
virus that causes mumps disease.
VIRUS:
general characteristics
• Family: Paramyxoviridae.
• Subfamily: Paramyxovirinae.
• Genus: Rubulavirus.
• Pleomorphic particles ranging from 100 to 800 nm in
size.
• Helical ribonucleocapsid core sorrounded by a host
cell derived lipid envelope.
VIRUS:
Structure
The genomic RNA have
15384 nucleotides
contains 7 transcription
units that encode open
reading frames for:
Nucleop
rotein
NP
Small
hydrophobic
protein - SH
V
protein
Phosphop
rotein
P
Hemagglutinin
neuraminidase
protein - HN
I
protein
Fusion
protein
F
Large protein
L
Matrix
protein
M
VIRUS:
Structure
VIRUS:
Structure.
MASS SPECTROMETRY - MS
MS is a powerful tool in the field of biochemistry and virology.
MASS SPECTROMETRY - MS
utility
• Measuring nanoparticle size.
• Looking for toxins.
• Looking for pesticides.
• Determine the elements and isotopes found in the solar wind.
• To identify the structures of complex biological molecules.
• To measure the metabolic gas Exchange.
• To locate oil deposits by measuring petroleum precursors in rock.
RELATIONSHIP MS / VIRUS.
• Combination of MS and HPTLC has been shown as a very convenient
method for lipid analysis.
• Virus proteome and lipidome care expressed virus features that to some
extent depend on the host cell and these must have an impact on virus
characterists such as infectivity and stability.
• Methods characterizing both virus proteins and lipids could be a tool in
raising the level of viral vaccines quality control.
GENERAL OBJECTIVE
The aim of this research was to analyse lipid and protein pattern of the
mumps virus derived from two cell lines by means of mass
spectrometry.
MATERIALES Y METODOS
LINEAS CELULARES Y VIRUS
ANALISIS DE PROTEINAS:
Western Blot
Es una técnica analítica usada para detector proteinas especificas en una
muestra determinada, mediante una electrophoresis en gel se separan las
proteínas.
Sirve para confirmer un resultado positive de una prueba, con base en la
producción de anticuerpos contra un virus.
ANALISIS DE LIPIDOS
Extractos
obtenidos.
Secar, separar. Y
detectar con luz
UV 365nm.
MALDI
Calibración de
masas.
ANALISIS DE LIPIDOS:
MALDI MS
matriz asistida por láser de desorción / ionización
Ionizacion
Analisis de
biomoleculas
Fragilidad
Fragmentacion por
métodos
convencionales
Acoplada a un
analizador
TOF
ANALISIS DE LIPIDOS:
HPLC
Separa macro
moleculas
Fase móvil
liquida
Fase
estacionaria
activa
RESULTADOS
RESULTADOS
 7 unidades de transcripción que codifican los marcos de lectura abiertos para:
 NP (Nucleoprotein)
 P phosphoprotein
 V protein
 I protein
 M matrix protein
 F fusion protein
 SH small hydrophobic protein
 L large protein
 HN Hemagglutinin Neuraminidase protein
CEF (Chick embryo fibroblasts)
 Usadas generalmente para la cultivación de virus
 Utilizadas en este experimento con la cepa L- Zagreb
Células Vero
 “Riñón verde”
 Utilizado en cultivos celulares
 Aislado a partir de células epiteliales del riñón de mono verde africano
 Puede replicarse a través de muchos ciclos sin envejecer
 Permite producción de vacunas contra enfermedades virales
RESULTADOS
 De las 9 proteínas solo 4 fueron identificadas en virus de paperas cultivados en =
 CEF: HN, NP, M y P
 Vero: HN, NP, M, P, L y V
Fig. 1
- Izquierda: Mediante condiciones no reductoras: Proteínas
identificadas con MS
- Derecha: Condiciones reductoras, pesos moleculares teóricos
del virus de las paperas
- 3 Bandas de NP, 61, 55, 48 kDa respectivamente
Fig 2
- Izquierda: Proteínas teóricas del virus de las paperas y sus
pesos moleculares calculados.
- Derecha: Proteínas identificadas mediante MS, NP como la
proteína más abundante en virus de las paperas.
Proteínas no detectadas:
- F: Puede deberse a baja expresión génica, nivel de glicosilación,
extracción poco efectiva.
- SH: No se ha detectado aún en viriones de paperas
- I: No se esperaba su aparición al no ser proteína de membrana
Fig 3
Fig 3
Fig 4
Fig 5
Fig 5
DISCUSION
AUTOR LO QUE DIJO SI O NO
Varnum SM, Streblow DN,
Monroe ME, Smith P, Auberry
KJ, Paša-Tolić LJ,
et al.
“Problem of the virus isolation
procedure and ability to clearly
clearly discern contaminating
contaminating
from interacting or constituting
constituting host cell proteins in
proteins in virions
has been recognized as
controversial”
AUTOR LO QUE DIJO SI O NO
Chertova E, Chertov O, Coren
LV, Roser JD, Trubey CM, Bess
JW, et al.
“However, host cell proteins can
be incorporated
into virions simply by being
being fortuitously present at the
at the
site of budding or preferentially
preferentially incorporated into
incorporated into virions
thereby influencing viral biology
biology and pathogenesis”
AUTOR LO QUE DIJO SI O NO
Lipatov AS, Yen H-L, Salomon R,
Ozaki H, Hoffman E, Webster
RG, et al
“The role of Nterminal
caspase cleavage of influenza
influenza NP correlates
with the host origin of the virus
virus and is speculated to be
be
a molecular determinant for
for host range”
AUTOR LO QUE DIJO SI O NO
Vigerust DJ, Sheperd VL, Stehle
T, Khan ZM, et al.
“The importance of
glycosylation
in virulence and immune
interactions on the level of
of glycoproteins
is quite well known”
CONCLUTIONS
 Knowing a virus proteome can be really helpfull for the development of vaccines.
 Cells Vero and CEF are both useful as cell culture and for virus studying
 Is important to do more studies about the function of glycolipids in the pathogenesis
and development of the virus inside the cell.
 L-Zagreb strain is also used for the development of vaccines against mumps, is relatively
straightforward to work with them.
 The obtained data indicate that lipid profile of mumps virus depends on the host cell
line.
 The results derived from Vero cells contained more information about the lipids .
 Although HN and F proteins are similar, because they are glycosylated by the host cell,
the F protein was not detected.
 The proteins in common in both cells were NP, M and P, because the damage or
alterations in these proteins determines the disease.
Daniel Madrid
Martha
Flórez
Analysis of the lipid and protein profile of the mumps virus derived from two cell lines by mass spectrometry

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Analysis of the lipid and protein profile of the mumps virus derived from two cell lines by mass spectrometry

  • 3. VIRUS Mumps virus is a nonsegmented, negative stranded RNA virus that causes mumps disease.
  • 4. VIRUS: general characteristics • Family: Paramyxoviridae. • Subfamily: Paramyxovirinae. • Genus: Rubulavirus. • Pleomorphic particles ranging from 100 to 800 nm in size. • Helical ribonucleocapsid core sorrounded by a host cell derived lipid envelope.
  • 5. VIRUS: Structure The genomic RNA have 15384 nucleotides contains 7 transcription units that encode open reading frames for: Nucleop rotein NP Small hydrophobic protein - SH V protein Phosphop rotein P Hemagglutinin neuraminidase protein - HN I protein Fusion protein F Large protein L Matrix protein M
  • 8. MASS SPECTROMETRY - MS MS is a powerful tool in the field of biochemistry and virology.
  • 9. MASS SPECTROMETRY - MS utility • Measuring nanoparticle size. • Looking for toxins. • Looking for pesticides. • Determine the elements and isotopes found in the solar wind. • To identify the structures of complex biological molecules. • To measure the metabolic gas Exchange. • To locate oil deposits by measuring petroleum precursors in rock.
  • 10. RELATIONSHIP MS / VIRUS. • Combination of MS and HPTLC has been shown as a very convenient method for lipid analysis. • Virus proteome and lipidome care expressed virus features that to some extent depend on the host cell and these must have an impact on virus characterists such as infectivity and stability. • Methods characterizing both virus proteins and lipids could be a tool in raising the level of viral vaccines quality control.
  • 11. GENERAL OBJECTIVE The aim of this research was to analyse lipid and protein pattern of the mumps virus derived from two cell lines by means of mass spectrometry.
  • 14. ANALISIS DE PROTEINAS: Western Blot Es una técnica analítica usada para detector proteinas especificas en una muestra determinada, mediante una electrophoresis en gel se separan las proteínas. Sirve para confirmer un resultado positive de una prueba, con base en la producción de anticuerpos contra un virus.
  • 15. ANALISIS DE LIPIDOS Extractos obtenidos. Secar, separar. Y detectar con luz UV 365nm. MALDI Calibración de masas.
  • 16. ANALISIS DE LIPIDOS: MALDI MS matriz asistida por láser de desorción / ionización Ionizacion Analisis de biomoleculas Fragilidad Fragmentacion por métodos convencionales Acoplada a un analizador TOF
  • 17. ANALISIS DE LIPIDOS: HPLC Separa macro moleculas Fase móvil liquida Fase estacionaria activa
  • 19. RESULTADOS  7 unidades de transcripción que codifican los marcos de lectura abiertos para:  NP (Nucleoprotein)  P phosphoprotein  V protein  I protein  M matrix protein  F fusion protein  SH small hydrophobic protein  L large protein  HN Hemagglutinin Neuraminidase protein
  • 20. CEF (Chick embryo fibroblasts)  Usadas generalmente para la cultivación de virus  Utilizadas en este experimento con la cepa L- Zagreb
  • 21. Células Vero  “Riñón verde”  Utilizado en cultivos celulares  Aislado a partir de células epiteliales del riñón de mono verde africano  Puede replicarse a través de muchos ciclos sin envejecer  Permite producción de vacunas contra enfermedades virales
  • 22. RESULTADOS  De las 9 proteínas solo 4 fueron identificadas en virus de paperas cultivados en =  CEF: HN, NP, M y P  Vero: HN, NP, M, P, L y V
  • 23. Fig. 1 - Izquierda: Mediante condiciones no reductoras: Proteínas identificadas con MS - Derecha: Condiciones reductoras, pesos moleculares teóricos del virus de las paperas - 3 Bandas de NP, 61, 55, 48 kDa respectivamente
  • 24. Fig 2 - Izquierda: Proteínas teóricas del virus de las paperas y sus pesos moleculares calculados. - Derecha: Proteínas identificadas mediante MS, NP como la proteína más abundante en virus de las paperas. Proteínas no detectadas: - F: Puede deberse a baja expresión génica, nivel de glicosilación, extracción poco efectiva. - SH: No se ha detectado aún en viriones de paperas - I: No se esperaba su aparición al no ser proteína de membrana
  • 25. Fig 3
  • 26. Fig 3
  • 27. Fig 4
  • 28. Fig 5
  • 29. Fig 5
  • 31. AUTOR LO QUE DIJO SI O NO Varnum SM, Streblow DN, Monroe ME, Smith P, Auberry KJ, Paša-Tolić LJ, et al. “Problem of the virus isolation procedure and ability to clearly clearly discern contaminating contaminating from interacting or constituting constituting host cell proteins in proteins in virions has been recognized as controversial”
  • 32. AUTOR LO QUE DIJO SI O NO Chertova E, Chertov O, Coren LV, Roser JD, Trubey CM, Bess JW, et al. “However, host cell proteins can be incorporated into virions simply by being being fortuitously present at the at the site of budding or preferentially preferentially incorporated into incorporated into virions thereby influencing viral biology biology and pathogenesis”
  • 33. AUTOR LO QUE DIJO SI O NO Lipatov AS, Yen H-L, Salomon R, Ozaki H, Hoffman E, Webster RG, et al “The role of Nterminal caspase cleavage of influenza influenza NP correlates with the host origin of the virus virus and is speculated to be be a molecular determinant for for host range”
  • 34. AUTOR LO QUE DIJO SI O NO Vigerust DJ, Sheperd VL, Stehle T, Khan ZM, et al. “The importance of glycosylation in virulence and immune interactions on the level of of glycoproteins is quite well known”
  • 36.  Knowing a virus proteome can be really helpfull for the development of vaccines.  Cells Vero and CEF are both useful as cell culture and for virus studying  Is important to do more studies about the function of glycolipids in the pathogenesis and development of the virus inside the cell.  L-Zagreb strain is also used for the development of vaccines against mumps, is relatively straightforward to work with them.
  • 37.  The obtained data indicate that lipid profile of mumps virus depends on the host cell line.  The results derived from Vero cells contained more information about the lipids .  Although HN and F proteins are similar, because they are glycosylated by the host cell, the F protein was not detected.  The proteins in common in both cells were NP, M and P, because the damage or alterations in these proteins determines the disease.

Editor's Notes

  1. P gene results in three mRNA transcripts corresponding to P,V and I proteins. NP packages RNA into a nucleocapsid that is used as a template for transcription and genome replication by RNA polymerase which is composed of L and P protein V protein was found to inhibit INF-B induced antiviral state. SH protein is considered to be a membrane protein with posible function in blocking TNF-A mediated apoptosis path way. HN and F are glycosylated by the host cell. HN is an attachment protein that binds receptor The role of F protein is to drive fusión of virus and the cell membrane resulting in virus entry.
  2. Deficion para que sirve
  3. Deficion para que sirve
  4. MS: mass spectrometry HPTLC: method high-performance thin layer chromatography
  5. El objetivo de esta investigación fue analizar el patrón de lípidos y proteínas del virus de las paperas derivado de dos líneas celulares por medio de espectrometría de masas.
  6. células Vero (células de riñón de mono verde africano) AMBOS VIRUS SE HICIERON CRECER EN CELULAS VERO. Las cepas del virus de las paperas: -L-zg -> se obtuvo del instituto de inmunología -JL5-> la dio la universidad Queens. De reino unido LOS CEF ( Fibroblastos de embrión de pollo) crecieron en MEM-H (medio esencial mínimo con sales de Hank Después de 24 h, el medio se reemplazó con medio sin suero y el virus se cultivó adicionalmente hasta que la citopático y se centrifugó a 3000 para eliminar grandes contaminantes de tamaño, y después de que los virus eran ultra centrifugaron a 142.000 durante 2 h y el sedimento se resuspendió en solución salina tamponada con fosfato.
  7. La detección de bandas de proteínas se realizó con solución ácida azul brillante de Coomassie R250. Detection of protein bands was performed using acidic Coomassie Brilliant Blue R250 solution. Protein bands were excised from the gel, trypsinized and peptides isolated and purified for MS analysis as described.
  8. Se secaron al vacio y se separaron usando cloroformo y metanol. Los lipidos fueron detectados con luz UV de 365nm. Se disolvieron los lipidos. Se aplico MALDI de acero inoxidable. EL aceite de ricino se utilize para la calibracion de masas . MALDI: matriz asistida por láser de desorción / ionización matrix assisted laser desorption/ionization
  9. TOF : Tiempo de vuelo. MALDI: L a ionización MALDI (desorción/ionización mediante láser asistida por Matriz), acoplada a un analizador TOF (tiempo de vuelo), es una técnica de ionización suave utilizada en espectrometría de masas que permite el análisis de biomoléculas (biopolímeros como proteínas, péptidos y azúcares) y moléculas orgánicas grandes (como polímeros, dendrímeros y otras macromoléculas) que tienden a hacerse frágiles y fragmentarse cuando son ionizadas por métodos más convencionales. En esta técnica la muestra se mezcla con la matriz en exceso sobre una superficie de metal de tal forma que ambas cocristalizan cuando se evapora el solvente. Esta preparación es sometida a pulsos cortos de láser en alto vacío lo que provoca que la absorción de energía por parte de la matriz sea convertida en energía de excitación y en transferencia de H+ a la muestra (ionización) dando lugar, normalmente, a especies monocargadas que son analizadas mediante TOF. Este analizador permite la determinación de la masa en una región de alto vacío mediante una medida muy precisa del período de tiempo desde la aceleración de los iones en la fuente hasta que impactan con el detector.  
  10. Cromatografia de líquidos. HPLC: HPLC, de high-performance liquid chromatography) La HPLC es capaz de separar macromoléculas y especies iónicas, productos naturales lábiles, materiales poliméricos y una gran variedad de otros grupos polifuncionales de alto peso molecular. Con una fase móvil líquida interactiva, otro parámetro se encuentra disponible para la selectividad, en adición a una fase estacionaria activa. La HPLC ofrece una mayor variedad de fases estacionarias, lo que permite una mayor gama de estas interacciones selectivas y más posibilidades para la separación. En la cromatografía líquida, la fase móvil es un líquido que fluye a través de una columna que contiene a la fase fija. La separación cromatográfica en HPLC es el resultado de las interacciones específicas entre las moléculas de la muestra en ambas fases, móvil y estacionaria
  11. PMF (Peptide mass fingerprint) Huella peptídica El espectro de las bandas NP con aparente menor peso molecular pierden sus péptidos C-Terminal, tanto en CEF que hay tres bandas, como en Vero que hay dos bandas Figura 3, A: Rojo: NP de 61 kDa Azul: NP de 55 kDa Verde: NP de 48 kDa
  12. B: Verde: 48kDa—400 aminoácidos y acompañada de proteína P Azul: 55kDa---525 aminoácidos Rojo: 61kDa---540 aminoácidos, única que posee péptidos C-Terminal
  13. El virus en CEF tiene menor número de clases de lípidos presentes en comparación a los virus crecidos en Vero, especialmente en cuanto a los glicolípidos Se obtuvieron resultados muy similares para las células lipídicas en total En las células Vero se detectaron glicolípidos con hasta 5 unidades monosacáridos (Compuesto más polar en el HPTLC)
  14. Se pueden observar los picos de mayor polaridad, que quiere decir que se detectaron glicolípidos, con unidades de monosacáridos, el máximo fue de 5 en la cepa de JL5 crecido en células Vero.
  15. obtained data indicate that lipid profile of mumps virus depends on the host cell line.. Results showed that lipids of both mumps virus strains derived from Vero cells contained complex glycolipids with up to five monosaccharide units whereas the lipid pattern of mumps virus derived from CEF was less complex