The document discusses Modware, an object-oriented Perl interface for querying and updating the Chado database schema. It provides semantically sensible classes and methods that encapsulate Chado's business rules for easier and more efficient development. An example demonstrates storing a gene with exons in Chado using Modware and generating a web page to display the gene details.
2nd Proj. Update: Integrating SWI-Prolog for Semantic Reasoning in BioclipseSamuel Lampa
Contains a small background on the semantic web, and shows how Prolog is thought to be used from inside Bioclipse research software for RDF data handling.
2nd Proj. Update: Integrating SWI-Prolog for Semantic Reasoning in BioclipseSamuel Lampa
Contains a small background on the semantic web, and shows how Prolog is thought to be used from inside Bioclipse research software for RDF data handling.
The talk will cover details of implementing modern API design for web-services. You will find differences in two main approaches: API Gateway for every single client and common API which tends to serve any client. Best practices from the world of REST API designing including but not limited to HATEoAS
Slides to the Hands On Spring Data lab, presented in Paris on Dec 10th, 2012. Code exercises are here: https://github.com/ericbottard/hands-on-spring-data
Web Integration Patterns in the Era of HTML5johnwilander
Presentation given at OWASP BeNeLux November 2012 and GeekMeet Stockholm January 2013. Covers secure and robust integration patterns for the web using cross origin resource sharing (CORS), sandboxed iframes, and the postMessage API.
Java Persistence Frameworks for MongoDBTobias Trelle
After a short introduction to the MongoDB Java driver we'll have a detailed look at higher level persistence frameworks like Morphia, Spring Data MongoDB and Hibernate OGM with lots of examples.
Start developing for the Semantic Web with JAVA. This is an introduction how to tap into your linked data, open linked data and create flexible useful applications.
[AI04] Scaling Machine Learning to Big Data Using SparkML and SparkRde:code 2017
Azure's HDInsight provides an easy way to process big data using Spark, and learn from it using Machine Learning. See SparkML in action, and learn how to use R and Python at scale, within Jupyter.
製品/テクノロジ: AI (人工知能)/Deep Learning (深層学習)/Machine Learning (機械学習)/Microsoft Azure
Michael Lanzetta
Microsoft Corporation
Developer Experience and Evangelism
Principal Software Development Engineer
The talk will cover details of implementing modern API design for web-services. You will find differences in two main approaches: API Gateway for every single client and common API which tends to serve any client. Best practices from the world of REST API designing including but not limited to HATEoAS
Slides to the Hands On Spring Data lab, presented in Paris on Dec 10th, 2012. Code exercises are here: https://github.com/ericbottard/hands-on-spring-data
Web Integration Patterns in the Era of HTML5johnwilander
Presentation given at OWASP BeNeLux November 2012 and GeekMeet Stockholm January 2013. Covers secure and robust integration patterns for the web using cross origin resource sharing (CORS), sandboxed iframes, and the postMessage API.
Java Persistence Frameworks for MongoDBTobias Trelle
After a short introduction to the MongoDB Java driver we'll have a detailed look at higher level persistence frameworks like Morphia, Spring Data MongoDB and Hibernate OGM with lots of examples.
Start developing for the Semantic Web with JAVA. This is an introduction how to tap into your linked data, open linked data and create flexible useful applications.
[AI04] Scaling Machine Learning to Big Data Using SparkML and SparkRde:code 2017
Azure's HDInsight provides an easy way to process big data using Spark, and learn from it using Machine Learning. See SparkML in action, and learn how to use R and Python at scale, within Jupyter.
製品/テクノロジ: AI (人工知能)/Deep Learning (深層学習)/Machine Learning (機械学習)/Microsoft Azure
Michael Lanzetta
Microsoft Corporation
Developer Experience and Evangelism
Principal Software Development Engineer
Tips And Tricks For Bioinformatics Software Engineeringjtdudley
This is a talk I've given twice at Stanford recently. It's essentially a brain dump of my thoughts on being a Bioinformatician with lots of links to useful tools.
Review unknown code with static analysis Zend con 2017Damien Seguy
Code quality is not just for Christmas, it is a daily part of the job. So, what do you do when you're handed with a five feet long pole a million lines of code that must be vetted? You call static analysis to the rescue. During one hour, we'll be reviewing totally unknown code: no name, no usage, not a clue. We'll apply a wide range of tools, reaching for anything that helps us understand the code and form an opinion on it. Can we break this mystery and learn how everyone else is looking at our code?
Slides from presentation: "Revoke-Obfuscation: PowerShell Obfuscation Detection (And Evasion) Using Science" originally released at Black Hat USA 2017 & DEF CON by @danielhbohannon and @Lee_Holmes.
For more information: http://www.danielbohannon.com/presentations/
This workshop is a hands-on training where a real Zend Framework application is used as an example to start improving QA using tools to test, document and perform software metric calculations to indicate where the software can be improved. I also explain the reports produced by a CI system.
Essentials of Automations: Optimizing FME Workflows with ParametersSafe Software
Are you looking to streamline your workflows and boost your projects’ efficiency? Do you find yourself searching for ways to add flexibility and control over your FME workflows? If so, you’re in the right place.
Join us for an insightful dive into the world of FME parameters, a critical element in optimizing workflow efficiency. This webinar marks the beginning of our three-part “Essentials of Automation” series. This first webinar is designed to equip you with the knowledge and skills to utilize parameters effectively: enhancing the flexibility, maintainability, and user control of your FME projects.
Here’s what you’ll gain:
- Essentials of FME Parameters: Understand the pivotal role of parameters, including Reader/Writer, Transformer, User, and FME Flow categories. Discover how they are the key to unlocking automation and optimization within your workflows.
- Practical Applications in FME Form: Delve into key user parameter types including choice, connections, and file URLs. Allow users to control how a workflow runs, making your workflows more reusable. Learn to import values and deliver the best user experience for your workflows while enhancing accuracy.
- Optimization Strategies in FME Flow: Explore the creation and strategic deployment of parameters in FME Flow, including the use of deployment and geometry parameters, to maximize workflow efficiency.
- Pro Tips for Success: Gain insights on parameterizing connections and leveraging new features like Conditional Visibility for clarity and simplicity.
We’ll wrap up with a glimpse into future webinars, followed by a Q&A session to address your specific questions surrounding this topic.
Don’t miss this opportunity to elevate your FME expertise and drive your projects to new heights of efficiency.
UiPath Test Automation using UiPath Test Suite series, part 4DianaGray10
Welcome to UiPath Test Automation using UiPath Test Suite series part 4. In this session, we will cover Test Manager overview along with SAP heatmap.
The UiPath Test Manager overview with SAP heatmap webinar offers a concise yet comprehensive exploration of the role of a Test Manager within SAP environments, coupled with the utilization of heatmaps for effective testing strategies.
Participants will gain insights into the responsibilities, challenges, and best practices associated with test management in SAP projects. Additionally, the webinar delves into the significance of heatmaps as a visual aid for identifying testing priorities, areas of risk, and resource allocation within SAP landscapes. Through this session, attendees can expect to enhance their understanding of test management principles while learning practical approaches to optimize testing processes in SAP environments using heatmap visualization techniques
What will you get from this session?
1. Insights into SAP testing best practices
2. Heatmap utilization for testing
3. Optimization of testing processes
4. Demo
Topics covered:
Execution from the test manager
Orchestrator execution result
Defect reporting
SAP heatmap example with demo
Speaker:
Deepak Rai, Automation Practice Lead, Boundaryless Group and UiPath MVP
Dev Dives: Train smarter, not harder – active learning and UiPath LLMs for do...UiPathCommunity
💥 Speed, accuracy, and scaling – discover the superpowers of GenAI in action with UiPath Document Understanding and Communications Mining™:
See how to accelerate model training and optimize model performance with active learning
Learn about the latest enhancements to out-of-the-box document processing – with little to no training required
Get an exclusive demo of the new family of UiPath LLMs – GenAI models specialized for processing different types of documents and messages
This is a hands-on session specifically designed for automation developers and AI enthusiasts seeking to enhance their knowledge in leveraging the latest intelligent document processing capabilities offered by UiPath.
Speakers:
👨🏫 Andras Palfi, Senior Product Manager, UiPath
👩🏫 Lenka Dulovicova, Product Program Manager, UiPath
DevOps and Testing slides at DASA ConnectKari Kakkonen
My and Rik Marselis slides at 30.5.2024 DASA Connect conference. We discuss about what is testing, then what is agile testing and finally what is Testing in DevOps. Finally we had lovely workshop with the participants trying to find out different ways to think about quality and testing in different parts of the DevOps infinity loop.
Epistemic Interaction - tuning interfaces to provide information for AI supportAlan Dix
Paper presented at SYNERGY workshop at AVI 2024, Genoa, Italy. 3rd June 2024
https://alandix.com/academic/papers/synergy2024-epistemic/
As machine learning integrates deeper into human-computer interactions, the concept of epistemic interaction emerges, aiming to refine these interactions to enhance system adaptability. This approach encourages minor, intentional adjustments in user behaviour to enrich the data available for system learning. This paper introduces epistemic interaction within the context of human-system communication, illustrating how deliberate interaction design can improve system understanding and adaptation. Through concrete examples, we demonstrate the potential of epistemic interaction to significantly advance human-computer interaction by leveraging intuitive human communication strategies to inform system design and functionality, offering a novel pathway for enriching user-system engagements.
State of ICS and IoT Cyber Threat Landscape Report 2024 previewPrayukth K V
The IoT and OT threat landscape report has been prepared by the Threat Research Team at Sectrio using data from Sectrio, cyber threat intelligence farming facilities spread across over 85 cities around the world. In addition, Sectrio also runs AI-based advanced threat and payload engagement facilities that serve as sinks to attract and engage sophisticated threat actors, and newer malware including new variants and latent threats that are at an earlier stage of development.
The latest edition of the OT/ICS and IoT security Threat Landscape Report 2024 also covers:
State of global ICS asset and network exposure
Sectoral targets and attacks as well as the cost of ransom
Global APT activity, AI usage, actor and tactic profiles, and implications
Rise in volumes of AI-powered cyberattacks
Major cyber events in 2024
Malware and malicious payload trends
Cyberattack types and targets
Vulnerability exploit attempts on CVEs
Attacks on counties – USA
Expansion of bot farms – how, where, and why
In-depth analysis of the cyber threat landscape across North America, South America, Europe, APAC, and the Middle East
Why are attacks on smart factories rising?
Cyber risk predictions
Axis of attacks – Europe
Systemic attacks in the Middle East
Download the full report from here:
https://sectrio.com/resources/ot-threat-landscape-reports/sectrio-releases-ot-ics-and-iot-security-threat-landscape-report-2024/
Software Delivery At the Speed of AI: Inflectra Invests In AI-Powered QualityInflectra
In this insightful webinar, Inflectra explores how artificial intelligence (AI) is transforming software development and testing. Discover how AI-powered tools are revolutionizing every stage of the software development lifecycle (SDLC), from design and prototyping to testing, deployment, and monitoring.
Learn about:
• The Future of Testing: How AI is shifting testing towards verification, analysis, and higher-level skills, while reducing repetitive tasks.
• Test Automation: How AI-powered test case generation, optimization, and self-healing tests are making testing more efficient and effective.
• Visual Testing: Explore the emerging capabilities of AI in visual testing and how it's set to revolutionize UI verification.
• Inflectra's AI Solutions: See demonstrations of Inflectra's cutting-edge AI tools like the ChatGPT plugin and Azure Open AI platform, designed to streamline your testing process.
Whether you're a developer, tester, or QA professional, this webinar will give you valuable insights into how AI is shaping the future of software delivery.
PHP Frameworks: I want to break free (IPC Berlin 2024)Ralf Eggert
In this presentation, we examine the challenges and limitations of relying too heavily on PHP frameworks in web development. We discuss the history of PHP and its frameworks to understand how this dependence has evolved. The focus will be on providing concrete tips and strategies to reduce reliance on these frameworks, based on real-world examples and practical considerations. The goal is to equip developers with the skills and knowledge to create more flexible and future-proof web applications. We'll explore the importance of maintaining autonomy in a rapidly changing tech landscape and how to make informed decisions in PHP development.
This talk is aimed at encouraging a more independent approach to using PHP frameworks, moving towards a more flexible and future-proof approach to PHP development.
UiPath Test Automation using UiPath Test Suite series, part 3DianaGray10
Welcome to UiPath Test Automation using UiPath Test Suite series part 3. In this session, we will cover desktop automation along with UI automation.
Topics covered:
UI automation Introduction,
UI automation Sample
Desktop automation flow
Pradeep Chinnala, Senior Consultant Automation Developer @WonderBotz and UiPath MVP
Deepak Rai, Automation Practice Lead, Boundaryless Group and UiPath MVP
1. Modware: An Object-oriented Perl Interface to the Chado Schema Eric Just Senior Bioinformatics Scientist dictyBase: http://dictybase.org Northwestern University Generic Model Organism Database Project (GMOD)
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8. A Simple Gene Example A gene is a region on a chromosome that encloses one or more transcript objects. An mRNA is a protein-coding transcript is composed of one or more exons which have coordinates on a chromosome. Chromosome 3
11. #!/usr/bin/perl use Modware::Feature; use CGI; my $id = CGI::param(‘primary_id'); my $count = 1; # Get all data from database my $feature = new Modware::Feature( -primary_id => $id ); my $chromosome = $feature->reference_feature()->name(); my $gene = $feature->gene()->name(); my @exons = $feature->bioperl()->exons(); my $sequence = $feature->sequence( -type => ’protein', -format => 'fasta' ); # print the report print CGI->header; print "<pre>"; print $id." is on chromosome $chromosome"; print " and is the gene $gene"; # print the number and position of each exon foreach my $exon (@exons) { print "Exon $count. start=".$exon->start(). " end=".$exon->end().""; $count++; } print $sequence; print "</pre>";
20. # USE CASE: Add a description, dbxref, and an exon my $transcript = new Modware::Feature( -primary_id => 'DDB0233595' ); $transcript->description( 'Gene model derived from AU12345' ); $transcript->add_external_id( -source => 'GenBank Accession Number', -id => 'AU12345' ); # call the bioperl method to retrieve bioperl representation of object # need this to view/edit exon structure $bioperl = $transcript->bioperl(); # here, we are manipulating a Bio::SeqFeature::Gene object # shift the last exon back a little bit (to lose stop codon) [$bioperl->exons()]->[2]->start( 281050 ); # create a new exon and add it to the feature my $exon = Bio::SeqFeature::Gene::Exon->new( -start => 280921, -end => 280959, -strand => -1 ); $exon->is_coding(1); $bioperl->add_exon($exon); # update writes everything to the database $transcript->update();