Modware next generation with pub module
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Modware is a middleware layer that provides an object-relational mapping (ORM) for interacting with biological data stored in a Chado database. It hides Chado's specific storage details and provides APIs for CRUD operations, searching, and traversing relationships between biological concepts. Modware uses Moose and Bio::Chado::Schema and supports connecting to PostgreSQL, Oracle, and SQLite databases.
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- 1. Modware: Its latest development using Moose and Bio::Chado::Schema Siddhartha Basu dictyBase http://www.dictybase.org Center for Genetic Medicine Northwestern University
- 5. CRUD API use Modware::Publication::Pubmed; use Modware::Publication::Author ; my $pub = Modware::Publication::Pubmed->new ( year => 2010, status => ‘published’, cv => ‘pub_type’ ); $pub->pubmed_id(332228); $pub->journal(‘JBC’); $pub->abstract(‘This is a cool abstarct’); $pub->title(‘Charming); $pub->add_author( Modware::Publication::Author->new( first_name => ‘Larry’, last_name => ‘Johnson’, initials => ‘Mr.’ ) );
- 9. Web application (List of publication)
- 12. Experimental builder API package Modware::Publication::Pubmed; use Modware::Chado; bcs_resultset ‘Pub::Pub’; chado_has $_ for qw/title pages issue volume/; chado_has ‘pub_id’ => (column => ‘primary’); chado_has ‘year’ => (column => ‘pyear’); chado_has ‘pubmed_id’ => (column => ‘uniquename’);
- 13. chado_type ‘type’ => (cv => ‘pub_type’); chado_property ‘abstract’ => (cv => ‘pub_type’, cvterm => ‘pub_abstract’); chado_has_many ‘authors’ => (class => ‘Modware::Publication::Author’);
- 14. chado_type ‘type’ => (cv => ‘pub_type’); chado_property ‘abstract’ => (cv => ‘pub_type’, cvterm => ‘pub_abstract’); chado_has_many ‘authors’ => (class => ‘Modware::Publication::Author’);
- 15. package Modware::Chado::Stock; use Modware::Chado; bcs_resultset ‘Stock::Stock; chado_dbxref ‘id’ => (db => ‘Stock’); chado_belongs_to ‘organism’ => (class => ‘Modware::Chado::Organism’);
Editor's Notes
- API not autogenerated
- API not autogenerated