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Application of SPME/GC-MS To
Characterize Metabolites in the
Biodesulfurization of Organosulfur
Model Compounds in Bitumen†
T A N Y A M A C P H E R S O N , ‡
C H A R L E S W . G R E E R , ‡ E D W A R D Z H O U , ‡
A L I S O N M . J O N E S , ‡ G E S I N E W I S S E , ‡
P E T E R C . K . L A U , ‡ B R U C E S A N K E Y , §
M A T T H E W J . G R O S S M A N , | A N D
J A L A L H A W A R I * , ‡
Biotechnology Research Institute,
National Research Council Canada, 6100 Royalmount Ave,
Montreal (PQ), Canada H4P 2R2, Imperial Oil Resources Ltd,
3535 Research Road NW., Calgary, Alberta, Canada T2L 2K8,
and Exxon Research and Engineering Co., Route 22 E,
Annandale, New Jersey 08801
A combined solid-phase microextraction/GC-MS analytical
technique was used to monitor the formation of
metabolites in the biodesulfurization of the bitumen model
organosulfur compounds, dibenzothiophene (DBT) and
the dialkylated derivative 4,6-diethyldibenzothiophene (DEDBT),
by Rhodococcus sp. strain ECRD-1. In the case of DBT,
the following metabolites were detected: DBT 5-oxide
(sulfoxide), DBT 5,5-dioxide (sulfone), dibenz[c,e][1,2]oxathiin
6-oxide (sultine), dibenz[c,e][1,2]oxathiin 6,6-dioxide (sul-
tone), and the end product, 2-hydroxybiphenyl (2-HBP),
whereas, with DEDBT, 4,6-DEDBT 5-oxide, 4,6-diethyldibenz-
[c,e][1,2]oxathiin 6-oxide (sultine), and 2-hydroxy-3,3′-
diethylbiphenyl (HDEBP) as the final product, were identified.
A time course study for the formation and disappearance
of DBT and DEDBT metabolites was used to construct
desulfurization pathways, which in both cases, involved the
formation of the corresponding sulfoxides.
Introduction
Solid-phasemicroextraction(SPME)isasolventlessandrapid
extraction technique that uses polymer-coated fibers for the
extractionoforganiccompoundsfromanaqueousorgaseous
phase sample followed by thermal desorption in the injection
port of a gas chromatograph for subsequent detection and
quantification. The technique is known for its speed and
sensitivity which enables detection in the microgram per
liter range (1-5).
AlthoughSPMEhasbeenwidelyusedforthetraceanalysis
of organic compounds in several aqueous based matrixes,
little is known on the applicability of the technique for
monitoringorganicbiotransformationsinbiologicalmatrixes
(6). Until recently, lengthy sample preparation and separa-
tion techniques (e.g., liquid/liquid extraction followed by
chromatographic cleanup procedures) were required to
isolate and identify intermediates produced during biotrans-
formation processes (5, 7). When such intermediates are
formed in trace amounts, the previously mentioned tradi-
tional techniques are not practical or fast enough for their
detection, thus, leading to the loss of valuable information
on the transformation pathways.
The main objective of this study was to apply SPME in
combination with GC/MS to identify metabolites formed
during desulfurization by Rhodococcus sp. strain ECRD-1, of
two model thiophenic compounds commonly found in fossil
fuel, i.e., DBT and DEDBT (8, 9). In Canada, reserves of
fossil fuel such as bitumen are extremely large, but the fuel
value is low due in part to the high organic sulfur content,
which upon combustion, can release sulfur dioxide into the
atmosphere causing acid rain. To increase the fuel value
without causing harm to the environment, the crude oil must
be desulfurized without an excessive reduction of its calorific
value (10-12). Several studies have described products that
are generated from these model compounds using different
microorganisms under both aerobic and anaerobic condi-
tions. For example, through extensive GC/FTIR/MS analysis,
Olson et al. (13) reported the formation of key metabolites
including dibenz[c,e][1,2]oxathiin 6-oxide (sultine) and dibenz-
[c,e][1,2]oxathiin 6,6-dioxide (sultone) during the desulfur-
ization of DBT by Rhodococcus sp. strain IGTS8.
The present work describes the utility of SPME/GC-MS
in the identification of key metabolites formed during the
desulfurization of DBT and DEDBT using Rhodococcus sp.
strain ECRD-1. A time profile of the appearance and
disappearance of the detected metabolites was used to
elucidatethedesulfurizationpathwayofthesemodelorgano-
sulfur compounds by Rhodococcus sp. strain ECRD-1.
Materials and Methods
Dibenzothiophene(DBT)andDBT5,5-dioxide(sulfone)were
from Aldrich, (Milwaukee, WI). DBT 5-oxide (sulfoxide) was
from ICN Biomedicals, Inc., (High Wycombe, U.K.). Dibenz-
[c,e][1,2]oxathiin 6-oxide (DBT-sultine), dibenz[c,e][1,2]-
oxathiin 6,6-dioxide (DBT-sultone), 4,6-diethyl diben-
zothiophene(DEDBT),3-methyl-dibenzothiophene(MDBT),
and 4,6-diethyl dibenzothiophene 5,5-dioxide (DEDBT-
sulfone) were from Exxon, NJ. The 2-hydroxybiphenyl (2-
HBP) was from Sigma (St. Louis, MO). Rhodococcus sp. strain
ECRD-1 was obtained from the American Type Culture
Collection (ATCC 55305).
Conditions for the biodesulfurization study. Rhodo-
coccus sp. strain ECRD-1 was grown in a minimal salts
medium (MSM) which contained 0.4 g of KH2PO4, 1.6 g of
K2HPO4, 1.55 g of NH4Cl, 0.165 g of MgCl2‚6H2O, 0.09 g‚CaCl2‚
2H2O, 5 g of sodium acetate, and 5 g of glucose/L of distilled
water (pH 7.0). After autoclaving, the MSM received 1.0 mL
of Pfennig’s vitamins, 5.0 mL of Modified Wolfe’s minerals,
and 0.5 mg of Na2WO4‚2H2O/L (Pfennig’s vitamins was
composed of 50 mg of F-aminobenzoic acid, 50 mg of vitamin
B-12, 10 mg of biotin, and 100 mg of thiamine per liter of
distilled water). Modified Wolfe’s minerals was composed
of 1.5 g of nitrilotriacetic acid, 5.1 g of MgCl2‚6H2O, 0.66 g
of MnCl2‚2H2O, 1.0 g of NaCl, 1.0 g of FeCl3‚6H2O, 0.1 g of
CaCl2‚6H2O, 0.01 g of CuCl2‚6H2O, 0.08 g of ZnCl2, 0.05 g of
AlCl3, and 0.04 g of Na2MoO4‚2H2O/L of distilled water (pH
6.5). The sulfur substrate, DBT or DEDBT, was added as a
sterile solution in HPLC-grade ethanol to give a final amount
added to each flask of 10 mg/L. The amounts added were
in excess of the aqueous solubility to ensure that substrate
did not become limiting during the assay. Cells from a plate
culture were transferred to a 10 mL volume of MSM and
* Corresponding author. Tel: 514 496 6267; fax: 514 496 6265;
e-mail: Jalal.Hawari@NRC.Ca.
†This publication is issued as NRCC no. 40521.
‡Biotechnology Research Institute.
§ Imperial Oil Resources Ltd.
| Exxon Research and Enginnering Co.
Environ. Sci. Technol. 1998, 32, 421-426
S0013-936X(97)00356-8 CCC: $15.00 © 1998 American Chemical Society VOL. 32, NO. 3, 1998 / ENVIRONMENTAL SCIENCE & TECHNOLOGY 9 421
Published on Web 02/01/1998
incubated at 27 °C on a shaker at 240 rpm for 4 days. When
alargevolumeofwashedcellswasrequired,500mLofstarting
culture was used. The cells were harvested from the culture
medium, washed with phosphate buffer, and resuspended
in MSM to perform a growing cell assay in 1 L Erlenmeyer
flasks incubated at 240 rpm and 27 °C. Control flasks
containing autoclaved cells were incubated under the same
conditions to determine if any degradation of the substrate
occurred abiotically. The cultures were sampled at intervals
by removing an aliquot (2 mL) for SPME/GC-MS analysis
and for the determination of the OD600 in a UV-vis spec-
trophotometer.
Solid-Phase Microextraction Followed by GC/MS. A
fused silica fiber coated with an 85 µm polyacrylate polymer
(Supelco, Bellefonte, PA) was conditioned by placing it inside
the injection port of a GC/MS at 300 °C until a blank
background was produced (about 2 h). At each sampling
time, 2 mL aliquots of the cell suspension were acidified
with H3PO4 (pH 2) and filtered with a Millex-HV 0.45 µm
filter to remove cells and undissolved substrate. Analytes
were adsorbed directly from the MSM filtrate onto the fiber
and then thermally desorbed inside the GC injector for
analysis by GC/MS. Thermodynamic equilibrium for the
partitioning of DBT and its final metabolite 2-HBP between
the SPME sorbent and the aqueous phase was achieved in
less than 20 min (Figure 1). A 20 min adsorption time
followed by a 10 min desorption were found appropriate for
reproducible analyses. Recovery was determined using
4-ethyl DBT (85%) as the recovery standard. The response
for both DBT and 2-HBP was linear (R ) 0.998 and 0.997,
respectively), over the following concentrations: 20, 50, 100,
200, 400, and 800 ppb.
A time study, to monitor the formation and disappearance
of metabolites during desulfurization, was carried out as
follows: culture samples, prepared as described above, were
taken at T ) 0 and at 20 min and then at either 30 or 40 min
intervals for the first 6 h followed by samplings at 24 and 72
h.
A Varian GC/MS equipped with a Saturn II ion trap
detector (transfer line temperature 220 °C) was connected
to a DB-5 capillary column (15 m × 0.25 mm id × 0.25 µm
film). A splitless injection was used for the first 6 min,
followed by split injection (ratio 1/10) for the remainder of
the GC program. The carrier gas was helium, and the
temperature of the injection port was 250 °C. The initial
oven temperature (100 °C) was increased at a rate of 7 °C/
min to 210 °C, followed by 15 °C/min to a final temperature
of280 °C. Themassspectrumwasobtainedusinganelectron
impact of 70 eV with a filament emission current of 30 mA,
a mass range of 20-300 amu and a scan rate of 2 scans/s.
Metabolites were identified by comparison with authentic
standards, and the profile of their formation was followed by
their area counts. Positive chemical ionization (PCI) with
CH4 gas was used to characterize the DEDBT metabolites
that did not have authentic standards.
Results and Discussion
Metabolites from the Desulfurization of DBT by Rhodo-
coccus sp. Strain ECRD-1. A typical SPME/GC/MS total ion
chromatogram of DBT undergoing desulfurization, contain-
ing the starting material and several other intermediate
products, is shown in Figure 2. One metabolite, observed
at a retention time (rt) of 13.40 min, was identified by its
mass spectrum and by comparison with a reference com-
poundasDBT-sulfoxide. Themetaboliteshowedamolecular
ion at m/z 200 amu and a base peak at m/z 184 correspond-
ing to the loss of an oxygen radical (16 amu). A second
FIGURE 1. Representative adsorption isotherms of DBT, EDBT, and
2-HBPusingpolyacrylateSPME.ISistheinternalstandard3-methyl-
dibenzothiophene (MDBT) (100 ppb).
FIGURE 2. A typical SPME/GC/MS total ion chromatogram of
biodesulfurization of DBT by Rhodococcus sp. strain ECRD-1. The
metabolites are identified as follows: DBT (I), DBT 5-oxide (II), DBT
5,5-dioxide (III), DBT-sultine (IV), DBT-sultone (V), and 2-HBP (VI).
x is unidentified.
FIGURE 3. A typical SPME/GC/MS chromatogram of the metabolite
dibenzo[c,e][1,2]oxathiin 6-oxide (sultine) formed during the biode-
sulfurization of DBT by Rhodococcus sp. strain ECRD-1.
422 9 ENVIRONMENTAL SCIENCE & TECHNOLOGY / VOL. 32, NO. 3, 1998
metabolite, observed at a rt of 13.50 min, was identified as
DBT-sulfone, by its mass spectrum and by comparison with
an authentic standard. The metabolite showed a molecular
ion at m/z 210 amu, which was also the base peak. The
presence of DBT-sultine at a rt of 12.23 min was confirmed
by using an authentic standard. Also, the highest observed
mass ion, m/z ratio of 216, corresponded to the molecular
ion of DBT-sultine. There was another mass fragment at
m/z 200 corresponding to the loss of an oxygen radical (16
amu) and the base peak appeared at m/z 187 (see Figure 3).
DBT-sultone, with a rt of 13.24 min, was also confirmed by
using an authentic standard. The highest mass fragment
ion observed was 232 amu and was also the base peak (see
Figure 4). The final product, 2-hydroxybiphenyl, was ob-
served at a rt of 5.23 min and was identified with a standard
compound. The observation of the highest fragment ion
and base peak at a m/z 170 confirmed that the molecular
weight was the same as that of the standard. As Figure 2
shows, DBT-sultine, DBT-sultone, and 2-HBP have their
peaks highly resolved and pose no identification problem.
DBT-sulfoxide and DBT-sulfone were found severely over-
lapped and were identified by a selective ion retrieval (SIR)
method using the base peak of the sulfoxide (m/z 184 amu)
and the molecular ion (m/z 216 amu) of the sulfone.
Metabolites from the Desulfurization of DEDBT by
Rhodococcussp.StrainECRD-1.Figure5representsa typical
SPME/GC-MStotalionchromatogramofDEDBTundergoing
biodesulfurization. One metabolite, observed at a rt of 16.57
min, was tentatively identified as 4,6-diethyl dibenzothio-
phene-sulfoxide (4,6-DEDBT 5-oxide) based on its mass
spectrum (Figure 6). For example, the highest observed mass
fragment (256 amu) was found to represent the molecular
weight (m/z 256) of the suspected metabolite. Loss of an
oxygen radical (16 amu), gave the corresponding thiophene
(m/z 240) which fragmented in a fashion similar to the parent
FIGURE 4. A typical SPME/GC/MS chromatogram of the metabolite
dibenzo[c,e][1,2]oxathiin 6,6-oxide (sultone) formed during the
biodesulfurization of DBT by Rhodococcus sp. strain ECRD-1.
FIGURE 5. A typical SPME/GC/MS total ion chromatogram of the
biodesulfurization of 4,6-DEDBT by Rhodococcus sp. strain ECRD-1.
The metabolites are identified as follows: DEDBT (I), DEDBT 5-oxide
(II), DEDBT-sultine (III), and HDEBP (IV). x is unidentified.
FIGURE 6. A typical SPME/GC/MS chromatogram of the metabolite
DEDBT 5-oxide.
FIGURE 7. A typical profile of DBT metabolites detected in a resting/
growing cell assay with Rhodococcus sp. strain ECRD-1. Culture
density (OD600), accumulation of the final metabolite (2-HBP) (A),
and the formation and disappearance of intermediates (B) were
monitored for 72 h. Panel C expands the time axis for the first 6 h.
Relative concentration was measured using DBT as an internal
standard.
VOL. 32, NO. 3, 1998 / ENVIRONMENTAL SCIENCE & TECHNOLOGY 9 423
DEDBT compound. Other ion fragments observed at m/z
225 corresponded to the loss of both a CH3 and O radical,
while a fragment ion at m/z 210 corresponded to the loss of
an additional CH3- radical.
A second metabolite observed at a rt of 16.40 min was
also tentatively identified as the sultine derivative of DEDBT,
4,6-diethyldibenz[c,e][1,2]oxathiin 5-oxide, identified from
its mass fragmentation pattern (Scheme 1). The highest
observed mass ion at m/z 272 provided evidence of the
molecular weight of the metabolite (m/z 272 amu). A
fragment ion was observed at m/z 256 and was attributed to
the loss of an O radical (16 amu). There were also fragment
ions at m/z 271, 224, 244, and 243 and a base peak at m/z
215, corresponding to the loss of a H atom, SO, CO, CO +
H, and CO + CH2CH3 radicals, respectively.
The final product was observed at a rt of 10.15 min and
was tentatively identified from its mass spectrum and mass
fragmentation pattern as 2-hydroxy-3,3′-diethylbiphenyl
(HDEBP). It gave a molecular ion at m/z 226 and had a base
peak at m/z 211 and a prominent fragment ion at 197 amu
corresponding to the loss of a CH3 and a CH2CH3 group,
respectively. The mass fragmentation pattern observed for
the HDEBP product is similar to that reported earlier by Lee
et al. (9).
TimeProfilesofMetabolitesDetectedduringtheGrowth
ofStrainECRD-1onDBTandDEDBT: MetabolicPathways.
After establishing the suitability of SPME/GC-MS for the
direct detection of metabolites formed during biodesulfu-
rization, a growing cell assay was set up with strain ECRD-1
and DBT or DEDBT to look for the formation and disap-
pearance of the corresponding metabolites with time.
In the case of DBT, growing cell assays with a relatively
high initial OD600 (0.9) were used to produce sufficient
amounts of metabolites for time profiling. The mass range
20-300 amu was scanned repeatedly every 0.5 s to give a
total ion current chromatogram for each sample, and the
metabolitepeakswereintegrated. Selectedionretrieval(SIR)
was utilized to retrieve the mass ions of the base peak of
DBT-sulfoxide (m/z 184) and of the molecular ion of DBT-
sulfone (m/z 216) for quantitation. The peak area integration
counts were graphed to determine the appearance and
disappearance of the DBT metabolites over the course of the
experiment (Figure 7).
DBT-sulfoxide first appeared at 20 min, and then it
decreased rapidly to little more than a trace after 24 h (Figure
7, panels B and C). DBT-sulfone concentrations remained
low throughout the experiment (Figure 7). However, the
raw data indicated that the sulfone first appeared in the
sample after 1 h. DBT-sultine appeared at 1 h and continued
to accumulate for the duration of the experiment. DBT-
sultone first appeared at 3 h and 40 min and didn’t decrease
until 72 h (Figure 7B). The concentration of the end-product,
2-HBP, increased rapidly and reached a plateau after 24 h
(Figure 7A). The SPME/GC-MS data shown in Figure 7 does
not include DBT because the amount of DBT added to the
culture medium at t ) 0 was in excess of its water solubility
by roughly 2 orders of magnitude. Consequently, the treated
culture medium was first filtered to eliminate undissolved
DBT for subsequent analysis by SPME. The principle behind
the performance of the SPME analytical technique is that
the target analyte must first achieve a thermodynamic
equilibrium in its distribution between the polymeric coating
of the SPME fiber and the bulk aqueous phase (see Figure
1).
The data indicate a stepwise metabolism of DBT showing
that DBT-sulfoxide was the first metabolite formed. The
second metabolite, probably DBT-sulfone, seemed to be
convertedrapidlytoDBT-sultine,theacidrearrangedproduct
of the corresponding sulfinic acid, and this was followed by
the appearance of DBT-sultone, the acid rearranged product
of the corresponding sulfinic acid. 2-HBP was the final
product,anditsfinalconcentrationwas2ordersofmagnitude
higher than any other metabolite.
SCHEME 1. MS Fragmentation Pattern of the Metabolite
Diethyldibenzo[c,e][1,2]oxathiin 6,6-Oxide (DEDBT-Sultine)
FIGURE 8. A typical profile of DEDBT metabolites detected in a
resting/growing cell assay with Rhodococcus sp. strain ECRD-1.
Culture density (OD600), accumulation of the final metabolite (HDEBP)
(A), and the formation and disappearance of intermediates (B) were
monitored for 9 days.
424 9 ENVIRONMENTAL SCIENCE & TECHNOLOGY / VOL. 32, NO. 3, 1998
Several studies have described the use of Rhodococcus sp.
strain IGTS8 to desulfurize DBT to 2-HBP (14-20). Although
there is a general consensus that desulfurization of DBT to
2-HBP proceeds in a stepwise fashion, there seems to be a
variation among literature reports on the nature of the
metabolites and the order in which they appear. Piddington
et al. (15) reported that DBT is first converted to the
corresponding sulfone, which in turn is desulfurized to
produce 2-HBP as the end product. Lei and Tu (18) isolated
an enzyme from the same strain that catalyzes the conversion
of DBT to the corresponding sulfoxide and subsequently to
the sulfone. Whereas, Olson et al. (13) and Denome et al.
(16) reported that the desulfurization of DBT by the same
Rhodococcus sp. IGTS8 produced several intermediates
including DBT-sulfoxide, DBT sulfone, 2′-hydroxybiphenyl-
2-sulfonic and 2′-hydroxybiphenyl-2-sulfinic acid before
producing 2-HBP. All four intermediates detected by Olson
et al. (13), i.e., DBT-sulfoxide, DBT-sulfone, the sultone, and
the sultine were detected by the present SPME study. 2′-
Hydroxybiphenyl-2-sulfonic acid and 2′-hydroxybiphenyl-
2-sulfinic acid were not observed as acids but as the
corresponding cyclicized derivatives, i.e., the sultone and
the sultine, because of the acidic conditions (pH 2) employed
in preparing the sample (13).
The time profile showing the relationship among various
detected intermediates is best described in Scheme 2, which
closely resembles a hypothetically constructed pathway,
known as the 4S desulfurization pathway (13). For example,
the SPME data showed the following sequence, DBT f DBT-
sulfoxide f DBT-sulfone f DBT-sultine f DBT-sultone f
2-HBP, whereas the 4S pathway depicts desulfurization to
proceed through the following sequence, DBT, DBT-sulfox-
ide, DBT-sulfone, DBT-sulfonate (a precursor to the corre-
sponding sultone), and finally 2-HBP (13, 15).
The genes that have been cloned to date from the
desulfurization pathway of IGTS8 account for the production
of DBT-sulfoxide, DBT-sulfone, 2′-hydroxybiphenyl-2-sul-
finate (HBPS), and 2-HBP (17). Further investigations will
be required to determine if other gene products are required
for complete expression of the desulfurization pathway.
A time course of metabolites was also obtained for the
desulfurization of the sterically hindered DBT analogue,
DEDBT, by strain ECRD-1 (Figure 8). Although there was
some similarity to the DBT metabolite profile, some inter-
esting differences were observed. The most obvious differ-
ence was the length of time required before the metabolite
concentrations peaked, typically days instead of hours. This
may be due to the growing cell assay conditions used in the
present study, starting with cells at a low optical density
(OD600 ) 0.029), or it may have been caused by a steric effect
from the two bulky ethyl groups on the aromatic rings of the
substrate. The other obvious difference was the complete
absence of DEDBT-sulfone and DEDBT-sultone, although
traces of the sulfone derivative were observed when using
an enrichment culture.
SCHEME 2. Proposed Metabolic Pathway of Biodesulfurization of DBT by Rhodococcus sp. Strain ECRD-1a
a The bold arrows represent the actual sequential conversion observed by the SPME/GC-MS time study which resembles the theoretical 4S
pathway (13). The dashed arrow represents the possible second route to 2-HBP via the sulfinic acid. The bracketed Intermediates (2-hydroxybiphenyl
sulfinic acid and 2-hydroxybiphenyl sulfonic acid) were not observed directly by SPME, but were inferred from the detection of their acid (pH 2)
cyclicized derivatives, DBT-sultine and DBT-sultone.
VOL. 32, NO. 3, 1998 / ENVIRONMENTAL SCIENCE & TECHNOLOGY 9 425
Themetabolite,tentativelyidentifiedasDEDBT-sulfoxide,
peaked at 2 days, after which it decreased and was no longer
detected after 7 days. After 5 days, as the DEDBT-sulfoxide
concentration decreased, a second metabolite, suggested to
be DEDBT-sultine, appeared and peaked at day 7. The
end-product, identified as 2-hydroxy-3,3′-diethylbiphenyl
(HDEBP), was detected at a low concentration at T ) 0 and
continued to accumulate for the first 7 days. The DEDBT-
sulfone might have been formed in trace amounts that
converted rapidly to the next intermediate, as was the case
with DBT-sulfone. In an earlier study, Lee et al. (9) reported
the formation of DEDBT-sulfoxide, DEDBT-sulfone, and
HDEBP from the desulfurization of DEDBT using the same
strain. Fromtheprecedingdiscussion,thebiodesulfurization
of DEDBT by strain ECRD-1 can be reasonably profiled as
shown in Scheme 3.
Acknowledgments
We thank Chantale Beaulieu and Alain Corriveau for their
technical assistance and we thank Dr. Pawliszyn for helpful
discussions.
Literature Cited
(1) Arthur, C. L.; Pawliszyn, J. Anal. Chem. 1990, 62, 2145-2148.
(2) Zhang, Z.; Yang, M. J.; Pawliszyn, J. Anal. Chem. 1994, 66, 844A-
853A.
(3) Go´recki, T.; Pawliszyn, J. Anal. Chem. 1995, 67, 3265-3274.
(4) Pawliszyn, J. Trends Anal. Chem. 1995, 14, 113-122.
(5) Poerschmann, J.; Zhang, Z.; Kopinke, F.-D.; Pawliszyn, J. Anal.
Chem. 1997, 69, 597-600.
(6) Dias R. F.; Freeman K. H. Anal. Chem. 1997, 69, 944-950.
(7) Kopinke, F.-D.; Porschmann, J.; Remmler, M. Naturwissen-
schaften 1995, 82, 28-35.
(8) Denis-Larose, C.; Labbe´, D.; Bergeron, H.; Jones, A. M.; Greer,
C. W.; Hawari, J.; Grossman, M. J.; Sankey, B. M.; Lau, P. C. K.
Appl. Environ. Microbiol. 1997, 63, 2915-2919.
(9) Lee,M.K.;Senius,J.D.;Grossman,M.J.Appl.Environ.Microbiol.
1995, 61, 4362-4366.
(10) Dugan, P. R. Resour., Conserv. Recycl. 1991, 5, 101-125.
(11) Finnerty, W. R. Curr. Opin. Biotechnol. 1992, 3, 277-282.
(12) Kilbane, J. J. Trends Biotechnol. 1989, 7, 97-101.
(13) Olson, E. S.; Stanley, D. C.; Gallagher, J. R. Energy Fuels 1993,
7, 159-164.
(14) Gallagher, J. R.; Olson, E. S.; Stanley, D. C. FEMS Microbiol. Lett.
1993, 107, 31-36.
(15) Piddington, C. S.; Kovacevich, B. R.; Rambosek, J. Appl. Environ.
Microbiol. 1995, 61, 468-475.
(16) Denome, S. A.; Olson, E. S.; Young K. D. Appl Environ. Microbiol.
1993, 59, 2837-2843.
(17) Gray, A. K.; Pogrebinsky, O. S.; Mrachko, G. T.; Xi, L.; Monticello,
D. J.; Squires, C. H. Nat. Biotechnol. 1996, 14, 1705-1709.
(18) Lei, B.; Tu, S.-C. J. Bacteriol. 1996, 178, 5699-5705.
(19) Xi, L., Squires, C. H.; Monticello, D. J.; Childs, J. D. Biochem.
Biophys. Res. Commun. 1997, 230, 73-75.
(20) Li, M. Z.; Squires, C. H.; Monticello, D. J.; Childs, J. D. J. Bacteriol.
1996, 178, 6409-6418.
Received for review April 22, 1997. Revised manuscript re-
ceived November 14, 1997. Accepted November 18, 1997.
ES970356J
SCHEME 3. Proposed Metabolic Pathway for the
Biodesulfurization of 4,6-DEDBT by Rhodococcus sp. Strain
ECRD-1a
a The bold arrows represent the actual sequential conversion
observed by the SPME/GC-MS time study.
426 9 ENVIRONMENTAL SCIENCE & TECHNOLOGY / VOL. 32, NO. 3, 1998

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MacPherson 1998 EST

  • 1. Application of SPME/GC-MS To Characterize Metabolites in the Biodesulfurization of Organosulfur Model Compounds in Bitumen† T A N Y A M A C P H E R S O N , ‡ C H A R L E S W . G R E E R , ‡ E D W A R D Z H O U , ‡ A L I S O N M . J O N E S , ‡ G E S I N E W I S S E , ‡ P E T E R C . K . L A U , ‡ B R U C E S A N K E Y , § M A T T H E W J . G R O S S M A N , | A N D J A L A L H A W A R I * , ‡ Biotechnology Research Institute, National Research Council Canada, 6100 Royalmount Ave, Montreal (PQ), Canada H4P 2R2, Imperial Oil Resources Ltd, 3535 Research Road NW., Calgary, Alberta, Canada T2L 2K8, and Exxon Research and Engineering Co., Route 22 E, Annandale, New Jersey 08801 A combined solid-phase microextraction/GC-MS analytical technique was used to monitor the formation of metabolites in the biodesulfurization of the bitumen model organosulfur compounds, dibenzothiophene (DBT) and the dialkylated derivative 4,6-diethyldibenzothiophene (DEDBT), by Rhodococcus sp. strain ECRD-1. In the case of DBT, the following metabolites were detected: DBT 5-oxide (sulfoxide), DBT 5,5-dioxide (sulfone), dibenz[c,e][1,2]oxathiin 6-oxide (sultine), dibenz[c,e][1,2]oxathiin 6,6-dioxide (sul- tone), and the end product, 2-hydroxybiphenyl (2-HBP), whereas, with DEDBT, 4,6-DEDBT 5-oxide, 4,6-diethyldibenz- [c,e][1,2]oxathiin 6-oxide (sultine), and 2-hydroxy-3,3′- diethylbiphenyl (HDEBP) as the final product, were identified. A time course study for the formation and disappearance of DBT and DEDBT metabolites was used to construct desulfurization pathways, which in both cases, involved the formation of the corresponding sulfoxides. Introduction Solid-phasemicroextraction(SPME)isasolventlessandrapid extraction technique that uses polymer-coated fibers for the extractionoforganiccompoundsfromanaqueousorgaseous phase sample followed by thermal desorption in the injection port of a gas chromatograph for subsequent detection and quantification. The technique is known for its speed and sensitivity which enables detection in the microgram per liter range (1-5). AlthoughSPMEhasbeenwidelyusedforthetraceanalysis of organic compounds in several aqueous based matrixes, little is known on the applicability of the technique for monitoringorganicbiotransformationsinbiologicalmatrixes (6). Until recently, lengthy sample preparation and separa- tion techniques (e.g., liquid/liquid extraction followed by chromatographic cleanup procedures) were required to isolate and identify intermediates produced during biotrans- formation processes (5, 7). When such intermediates are formed in trace amounts, the previously mentioned tradi- tional techniques are not practical or fast enough for their detection, thus, leading to the loss of valuable information on the transformation pathways. The main objective of this study was to apply SPME in combination with GC/MS to identify metabolites formed during desulfurization by Rhodococcus sp. strain ECRD-1, of two model thiophenic compounds commonly found in fossil fuel, i.e., DBT and DEDBT (8, 9). In Canada, reserves of fossil fuel such as bitumen are extremely large, but the fuel value is low due in part to the high organic sulfur content, which upon combustion, can release sulfur dioxide into the atmosphere causing acid rain. To increase the fuel value without causing harm to the environment, the crude oil must be desulfurized without an excessive reduction of its calorific value (10-12). Several studies have described products that are generated from these model compounds using different microorganisms under both aerobic and anaerobic condi- tions. For example, through extensive GC/FTIR/MS analysis, Olson et al. (13) reported the formation of key metabolites including dibenz[c,e][1,2]oxathiin 6-oxide (sultine) and dibenz- [c,e][1,2]oxathiin 6,6-dioxide (sultone) during the desulfur- ization of DBT by Rhodococcus sp. strain IGTS8. The present work describes the utility of SPME/GC-MS in the identification of key metabolites formed during the desulfurization of DBT and DEDBT using Rhodococcus sp. strain ECRD-1. A time profile of the appearance and disappearance of the detected metabolites was used to elucidatethedesulfurizationpathwayofthesemodelorgano- sulfur compounds by Rhodococcus sp. strain ECRD-1. Materials and Methods Dibenzothiophene(DBT)andDBT5,5-dioxide(sulfone)were from Aldrich, (Milwaukee, WI). DBT 5-oxide (sulfoxide) was from ICN Biomedicals, Inc., (High Wycombe, U.K.). Dibenz- [c,e][1,2]oxathiin 6-oxide (DBT-sultine), dibenz[c,e][1,2]- oxathiin 6,6-dioxide (DBT-sultone), 4,6-diethyl diben- zothiophene(DEDBT),3-methyl-dibenzothiophene(MDBT), and 4,6-diethyl dibenzothiophene 5,5-dioxide (DEDBT- sulfone) were from Exxon, NJ. The 2-hydroxybiphenyl (2- HBP) was from Sigma (St. Louis, MO). Rhodococcus sp. strain ECRD-1 was obtained from the American Type Culture Collection (ATCC 55305). Conditions for the biodesulfurization study. Rhodo- coccus sp. strain ECRD-1 was grown in a minimal salts medium (MSM) which contained 0.4 g of KH2PO4, 1.6 g of K2HPO4, 1.55 g of NH4Cl, 0.165 g of MgCl2‚6H2O, 0.09 g‚CaCl2‚ 2H2O, 5 g of sodium acetate, and 5 g of glucose/L of distilled water (pH 7.0). After autoclaving, the MSM received 1.0 mL of Pfennig’s vitamins, 5.0 mL of Modified Wolfe’s minerals, and 0.5 mg of Na2WO4‚2H2O/L (Pfennig’s vitamins was composed of 50 mg of F-aminobenzoic acid, 50 mg of vitamin B-12, 10 mg of biotin, and 100 mg of thiamine per liter of distilled water). Modified Wolfe’s minerals was composed of 1.5 g of nitrilotriacetic acid, 5.1 g of MgCl2‚6H2O, 0.66 g of MnCl2‚2H2O, 1.0 g of NaCl, 1.0 g of FeCl3‚6H2O, 0.1 g of CaCl2‚6H2O, 0.01 g of CuCl2‚6H2O, 0.08 g of ZnCl2, 0.05 g of AlCl3, and 0.04 g of Na2MoO4‚2H2O/L of distilled water (pH 6.5). The sulfur substrate, DBT or DEDBT, was added as a sterile solution in HPLC-grade ethanol to give a final amount added to each flask of 10 mg/L. The amounts added were in excess of the aqueous solubility to ensure that substrate did not become limiting during the assay. Cells from a plate culture were transferred to a 10 mL volume of MSM and * Corresponding author. Tel: 514 496 6267; fax: 514 496 6265; e-mail: Jalal.Hawari@NRC.Ca. †This publication is issued as NRCC no. 40521. ‡Biotechnology Research Institute. § Imperial Oil Resources Ltd. | Exxon Research and Enginnering Co. Environ. Sci. Technol. 1998, 32, 421-426 S0013-936X(97)00356-8 CCC: $15.00 © 1998 American Chemical Society VOL. 32, NO. 3, 1998 / ENVIRONMENTAL SCIENCE & TECHNOLOGY 9 421 Published on Web 02/01/1998
  • 2. incubated at 27 °C on a shaker at 240 rpm for 4 days. When alargevolumeofwashedcellswasrequired,500mLofstarting culture was used. The cells were harvested from the culture medium, washed with phosphate buffer, and resuspended in MSM to perform a growing cell assay in 1 L Erlenmeyer flasks incubated at 240 rpm and 27 °C. Control flasks containing autoclaved cells were incubated under the same conditions to determine if any degradation of the substrate occurred abiotically. The cultures were sampled at intervals by removing an aliquot (2 mL) for SPME/GC-MS analysis and for the determination of the OD600 in a UV-vis spec- trophotometer. Solid-Phase Microextraction Followed by GC/MS. A fused silica fiber coated with an 85 µm polyacrylate polymer (Supelco, Bellefonte, PA) was conditioned by placing it inside the injection port of a GC/MS at 300 °C until a blank background was produced (about 2 h). At each sampling time, 2 mL aliquots of the cell suspension were acidified with H3PO4 (pH 2) and filtered with a Millex-HV 0.45 µm filter to remove cells and undissolved substrate. Analytes were adsorbed directly from the MSM filtrate onto the fiber and then thermally desorbed inside the GC injector for analysis by GC/MS. Thermodynamic equilibrium for the partitioning of DBT and its final metabolite 2-HBP between the SPME sorbent and the aqueous phase was achieved in less than 20 min (Figure 1). A 20 min adsorption time followed by a 10 min desorption were found appropriate for reproducible analyses. Recovery was determined using 4-ethyl DBT (85%) as the recovery standard. The response for both DBT and 2-HBP was linear (R ) 0.998 and 0.997, respectively), over the following concentrations: 20, 50, 100, 200, 400, and 800 ppb. A time study, to monitor the formation and disappearance of metabolites during desulfurization, was carried out as follows: culture samples, prepared as described above, were taken at T ) 0 and at 20 min and then at either 30 or 40 min intervals for the first 6 h followed by samplings at 24 and 72 h. A Varian GC/MS equipped with a Saturn II ion trap detector (transfer line temperature 220 °C) was connected to a DB-5 capillary column (15 m × 0.25 mm id × 0.25 µm film). A splitless injection was used for the first 6 min, followed by split injection (ratio 1/10) for the remainder of the GC program. The carrier gas was helium, and the temperature of the injection port was 250 °C. The initial oven temperature (100 °C) was increased at a rate of 7 °C/ min to 210 °C, followed by 15 °C/min to a final temperature of280 °C. Themassspectrumwasobtainedusinganelectron impact of 70 eV with a filament emission current of 30 mA, a mass range of 20-300 amu and a scan rate of 2 scans/s. Metabolites were identified by comparison with authentic standards, and the profile of their formation was followed by their area counts. Positive chemical ionization (PCI) with CH4 gas was used to characterize the DEDBT metabolites that did not have authentic standards. Results and Discussion Metabolites from the Desulfurization of DBT by Rhodo- coccus sp. Strain ECRD-1. A typical SPME/GC/MS total ion chromatogram of DBT undergoing desulfurization, contain- ing the starting material and several other intermediate products, is shown in Figure 2. One metabolite, observed at a retention time (rt) of 13.40 min, was identified by its mass spectrum and by comparison with a reference com- poundasDBT-sulfoxide. Themetaboliteshowedamolecular ion at m/z 200 amu and a base peak at m/z 184 correspond- ing to the loss of an oxygen radical (16 amu). A second FIGURE 1. Representative adsorption isotherms of DBT, EDBT, and 2-HBPusingpolyacrylateSPME.ISistheinternalstandard3-methyl- dibenzothiophene (MDBT) (100 ppb). FIGURE 2. A typical SPME/GC/MS total ion chromatogram of biodesulfurization of DBT by Rhodococcus sp. strain ECRD-1. The metabolites are identified as follows: DBT (I), DBT 5-oxide (II), DBT 5,5-dioxide (III), DBT-sultine (IV), DBT-sultone (V), and 2-HBP (VI). x is unidentified. FIGURE 3. A typical SPME/GC/MS chromatogram of the metabolite dibenzo[c,e][1,2]oxathiin 6-oxide (sultine) formed during the biode- sulfurization of DBT by Rhodococcus sp. strain ECRD-1. 422 9 ENVIRONMENTAL SCIENCE & TECHNOLOGY / VOL. 32, NO. 3, 1998
  • 3. metabolite, observed at a rt of 13.50 min, was identified as DBT-sulfone, by its mass spectrum and by comparison with an authentic standard. The metabolite showed a molecular ion at m/z 210 amu, which was also the base peak. The presence of DBT-sultine at a rt of 12.23 min was confirmed by using an authentic standard. Also, the highest observed mass ion, m/z ratio of 216, corresponded to the molecular ion of DBT-sultine. There was another mass fragment at m/z 200 corresponding to the loss of an oxygen radical (16 amu) and the base peak appeared at m/z 187 (see Figure 3). DBT-sultone, with a rt of 13.24 min, was also confirmed by using an authentic standard. The highest mass fragment ion observed was 232 amu and was also the base peak (see Figure 4). The final product, 2-hydroxybiphenyl, was ob- served at a rt of 5.23 min and was identified with a standard compound. The observation of the highest fragment ion and base peak at a m/z 170 confirmed that the molecular weight was the same as that of the standard. As Figure 2 shows, DBT-sultine, DBT-sultone, and 2-HBP have their peaks highly resolved and pose no identification problem. DBT-sulfoxide and DBT-sulfone were found severely over- lapped and were identified by a selective ion retrieval (SIR) method using the base peak of the sulfoxide (m/z 184 amu) and the molecular ion (m/z 216 amu) of the sulfone. Metabolites from the Desulfurization of DEDBT by Rhodococcussp.StrainECRD-1.Figure5representsa typical SPME/GC-MStotalionchromatogramofDEDBTundergoing biodesulfurization. One metabolite, observed at a rt of 16.57 min, was tentatively identified as 4,6-diethyl dibenzothio- phene-sulfoxide (4,6-DEDBT 5-oxide) based on its mass spectrum (Figure 6). For example, the highest observed mass fragment (256 amu) was found to represent the molecular weight (m/z 256) of the suspected metabolite. Loss of an oxygen radical (16 amu), gave the corresponding thiophene (m/z 240) which fragmented in a fashion similar to the parent FIGURE 4. A typical SPME/GC/MS chromatogram of the metabolite dibenzo[c,e][1,2]oxathiin 6,6-oxide (sultone) formed during the biodesulfurization of DBT by Rhodococcus sp. strain ECRD-1. FIGURE 5. A typical SPME/GC/MS total ion chromatogram of the biodesulfurization of 4,6-DEDBT by Rhodococcus sp. strain ECRD-1. The metabolites are identified as follows: DEDBT (I), DEDBT 5-oxide (II), DEDBT-sultine (III), and HDEBP (IV). x is unidentified. FIGURE 6. A typical SPME/GC/MS chromatogram of the metabolite DEDBT 5-oxide. FIGURE 7. A typical profile of DBT metabolites detected in a resting/ growing cell assay with Rhodococcus sp. strain ECRD-1. Culture density (OD600), accumulation of the final metabolite (2-HBP) (A), and the formation and disappearance of intermediates (B) were monitored for 72 h. Panel C expands the time axis for the first 6 h. Relative concentration was measured using DBT as an internal standard. VOL. 32, NO. 3, 1998 / ENVIRONMENTAL SCIENCE & TECHNOLOGY 9 423
  • 4. DEDBT compound. Other ion fragments observed at m/z 225 corresponded to the loss of both a CH3 and O radical, while a fragment ion at m/z 210 corresponded to the loss of an additional CH3- radical. A second metabolite observed at a rt of 16.40 min was also tentatively identified as the sultine derivative of DEDBT, 4,6-diethyldibenz[c,e][1,2]oxathiin 5-oxide, identified from its mass fragmentation pattern (Scheme 1). The highest observed mass ion at m/z 272 provided evidence of the molecular weight of the metabolite (m/z 272 amu). A fragment ion was observed at m/z 256 and was attributed to the loss of an O radical (16 amu). There were also fragment ions at m/z 271, 224, 244, and 243 and a base peak at m/z 215, corresponding to the loss of a H atom, SO, CO, CO + H, and CO + CH2CH3 radicals, respectively. The final product was observed at a rt of 10.15 min and was tentatively identified from its mass spectrum and mass fragmentation pattern as 2-hydroxy-3,3′-diethylbiphenyl (HDEBP). It gave a molecular ion at m/z 226 and had a base peak at m/z 211 and a prominent fragment ion at 197 amu corresponding to the loss of a CH3 and a CH2CH3 group, respectively. The mass fragmentation pattern observed for the HDEBP product is similar to that reported earlier by Lee et al. (9). TimeProfilesofMetabolitesDetectedduringtheGrowth ofStrainECRD-1onDBTandDEDBT: MetabolicPathways. After establishing the suitability of SPME/GC-MS for the direct detection of metabolites formed during biodesulfu- rization, a growing cell assay was set up with strain ECRD-1 and DBT or DEDBT to look for the formation and disap- pearance of the corresponding metabolites with time. In the case of DBT, growing cell assays with a relatively high initial OD600 (0.9) were used to produce sufficient amounts of metabolites for time profiling. The mass range 20-300 amu was scanned repeatedly every 0.5 s to give a total ion current chromatogram for each sample, and the metabolitepeakswereintegrated. Selectedionretrieval(SIR) was utilized to retrieve the mass ions of the base peak of DBT-sulfoxide (m/z 184) and of the molecular ion of DBT- sulfone (m/z 216) for quantitation. The peak area integration counts were graphed to determine the appearance and disappearance of the DBT metabolites over the course of the experiment (Figure 7). DBT-sulfoxide first appeared at 20 min, and then it decreased rapidly to little more than a trace after 24 h (Figure 7, panels B and C). DBT-sulfone concentrations remained low throughout the experiment (Figure 7). However, the raw data indicated that the sulfone first appeared in the sample after 1 h. DBT-sultine appeared at 1 h and continued to accumulate for the duration of the experiment. DBT- sultone first appeared at 3 h and 40 min and didn’t decrease until 72 h (Figure 7B). The concentration of the end-product, 2-HBP, increased rapidly and reached a plateau after 24 h (Figure 7A). The SPME/GC-MS data shown in Figure 7 does not include DBT because the amount of DBT added to the culture medium at t ) 0 was in excess of its water solubility by roughly 2 orders of magnitude. Consequently, the treated culture medium was first filtered to eliminate undissolved DBT for subsequent analysis by SPME. The principle behind the performance of the SPME analytical technique is that the target analyte must first achieve a thermodynamic equilibrium in its distribution between the polymeric coating of the SPME fiber and the bulk aqueous phase (see Figure 1). The data indicate a stepwise metabolism of DBT showing that DBT-sulfoxide was the first metabolite formed. The second metabolite, probably DBT-sulfone, seemed to be convertedrapidlytoDBT-sultine,theacidrearrangedproduct of the corresponding sulfinic acid, and this was followed by the appearance of DBT-sultone, the acid rearranged product of the corresponding sulfinic acid. 2-HBP was the final product,anditsfinalconcentrationwas2ordersofmagnitude higher than any other metabolite. SCHEME 1. MS Fragmentation Pattern of the Metabolite Diethyldibenzo[c,e][1,2]oxathiin 6,6-Oxide (DEDBT-Sultine) FIGURE 8. A typical profile of DEDBT metabolites detected in a resting/growing cell assay with Rhodococcus sp. strain ECRD-1. Culture density (OD600), accumulation of the final metabolite (HDEBP) (A), and the formation and disappearance of intermediates (B) were monitored for 9 days. 424 9 ENVIRONMENTAL SCIENCE & TECHNOLOGY / VOL. 32, NO. 3, 1998
  • 5. Several studies have described the use of Rhodococcus sp. strain IGTS8 to desulfurize DBT to 2-HBP (14-20). Although there is a general consensus that desulfurization of DBT to 2-HBP proceeds in a stepwise fashion, there seems to be a variation among literature reports on the nature of the metabolites and the order in which they appear. Piddington et al. (15) reported that DBT is first converted to the corresponding sulfone, which in turn is desulfurized to produce 2-HBP as the end product. Lei and Tu (18) isolated an enzyme from the same strain that catalyzes the conversion of DBT to the corresponding sulfoxide and subsequently to the sulfone. Whereas, Olson et al. (13) and Denome et al. (16) reported that the desulfurization of DBT by the same Rhodococcus sp. IGTS8 produced several intermediates including DBT-sulfoxide, DBT sulfone, 2′-hydroxybiphenyl- 2-sulfonic and 2′-hydroxybiphenyl-2-sulfinic acid before producing 2-HBP. All four intermediates detected by Olson et al. (13), i.e., DBT-sulfoxide, DBT-sulfone, the sultone, and the sultine were detected by the present SPME study. 2′- Hydroxybiphenyl-2-sulfonic acid and 2′-hydroxybiphenyl- 2-sulfinic acid were not observed as acids but as the corresponding cyclicized derivatives, i.e., the sultone and the sultine, because of the acidic conditions (pH 2) employed in preparing the sample (13). The time profile showing the relationship among various detected intermediates is best described in Scheme 2, which closely resembles a hypothetically constructed pathway, known as the 4S desulfurization pathway (13). For example, the SPME data showed the following sequence, DBT f DBT- sulfoxide f DBT-sulfone f DBT-sultine f DBT-sultone f 2-HBP, whereas the 4S pathway depicts desulfurization to proceed through the following sequence, DBT, DBT-sulfox- ide, DBT-sulfone, DBT-sulfonate (a precursor to the corre- sponding sultone), and finally 2-HBP (13, 15). The genes that have been cloned to date from the desulfurization pathway of IGTS8 account for the production of DBT-sulfoxide, DBT-sulfone, 2′-hydroxybiphenyl-2-sul- finate (HBPS), and 2-HBP (17). Further investigations will be required to determine if other gene products are required for complete expression of the desulfurization pathway. A time course of metabolites was also obtained for the desulfurization of the sterically hindered DBT analogue, DEDBT, by strain ECRD-1 (Figure 8). Although there was some similarity to the DBT metabolite profile, some inter- esting differences were observed. The most obvious differ- ence was the length of time required before the metabolite concentrations peaked, typically days instead of hours. This may be due to the growing cell assay conditions used in the present study, starting with cells at a low optical density (OD600 ) 0.029), or it may have been caused by a steric effect from the two bulky ethyl groups on the aromatic rings of the substrate. The other obvious difference was the complete absence of DEDBT-sulfone and DEDBT-sultone, although traces of the sulfone derivative were observed when using an enrichment culture. SCHEME 2. Proposed Metabolic Pathway of Biodesulfurization of DBT by Rhodococcus sp. Strain ECRD-1a a The bold arrows represent the actual sequential conversion observed by the SPME/GC-MS time study which resembles the theoretical 4S pathway (13). The dashed arrow represents the possible second route to 2-HBP via the sulfinic acid. The bracketed Intermediates (2-hydroxybiphenyl sulfinic acid and 2-hydroxybiphenyl sulfonic acid) were not observed directly by SPME, but were inferred from the detection of their acid (pH 2) cyclicized derivatives, DBT-sultine and DBT-sultone. VOL. 32, NO. 3, 1998 / ENVIRONMENTAL SCIENCE & TECHNOLOGY 9 425
  • 6. Themetabolite,tentativelyidentifiedasDEDBT-sulfoxide, peaked at 2 days, after which it decreased and was no longer detected after 7 days. After 5 days, as the DEDBT-sulfoxide concentration decreased, a second metabolite, suggested to be DEDBT-sultine, appeared and peaked at day 7. The end-product, identified as 2-hydroxy-3,3′-diethylbiphenyl (HDEBP), was detected at a low concentration at T ) 0 and continued to accumulate for the first 7 days. The DEDBT- sulfone might have been formed in trace amounts that converted rapidly to the next intermediate, as was the case with DBT-sulfone. In an earlier study, Lee et al. (9) reported the formation of DEDBT-sulfoxide, DEDBT-sulfone, and HDEBP from the desulfurization of DEDBT using the same strain. Fromtheprecedingdiscussion,thebiodesulfurization of DEDBT by strain ECRD-1 can be reasonably profiled as shown in Scheme 3. Acknowledgments We thank Chantale Beaulieu and Alain Corriveau for their technical assistance and we thank Dr. Pawliszyn for helpful discussions. Literature Cited (1) Arthur, C. L.; Pawliszyn, J. Anal. Chem. 1990, 62, 2145-2148. (2) Zhang, Z.; Yang, M. J.; Pawliszyn, J. Anal. Chem. 1994, 66, 844A- 853A. (3) Go´recki, T.; Pawliszyn, J. Anal. Chem. 1995, 67, 3265-3274. (4) Pawliszyn, J. Trends Anal. Chem. 1995, 14, 113-122. (5) Poerschmann, J.; Zhang, Z.; Kopinke, F.-D.; Pawliszyn, J. Anal. Chem. 1997, 69, 597-600. (6) Dias R. F.; Freeman K. H. Anal. Chem. 1997, 69, 944-950. (7) Kopinke, F.-D.; Porschmann, J.; Remmler, M. Naturwissen- schaften 1995, 82, 28-35. (8) Denis-Larose, C.; Labbe´, D.; Bergeron, H.; Jones, A. M.; Greer, C. W.; Hawari, J.; Grossman, M. J.; Sankey, B. M.; Lau, P. C. K. Appl. Environ. Microbiol. 1997, 63, 2915-2919. (9) Lee,M.K.;Senius,J.D.;Grossman,M.J.Appl.Environ.Microbiol. 1995, 61, 4362-4366. (10) Dugan, P. R. Resour., Conserv. Recycl. 1991, 5, 101-125. (11) Finnerty, W. R. Curr. Opin. Biotechnol. 1992, 3, 277-282. (12) Kilbane, J. J. Trends Biotechnol. 1989, 7, 97-101. (13) Olson, E. S.; Stanley, D. C.; Gallagher, J. R. Energy Fuels 1993, 7, 159-164. (14) Gallagher, J. R.; Olson, E. S.; Stanley, D. C. FEMS Microbiol. Lett. 1993, 107, 31-36. (15) Piddington, C. S.; Kovacevich, B. R.; Rambosek, J. Appl. Environ. Microbiol. 1995, 61, 468-475. (16) Denome, S. A.; Olson, E. S.; Young K. D. Appl Environ. Microbiol. 1993, 59, 2837-2843. (17) Gray, A. K.; Pogrebinsky, O. S.; Mrachko, G. T.; Xi, L.; Monticello, D. J.; Squires, C. H. Nat. Biotechnol. 1996, 14, 1705-1709. (18) Lei, B.; Tu, S.-C. J. Bacteriol. 1996, 178, 5699-5705. (19) Xi, L., Squires, C. H.; Monticello, D. J.; Childs, J. D. Biochem. Biophys. Res. Commun. 1997, 230, 73-75. (20) Li, M. Z.; Squires, C. H.; Monticello, D. J.; Childs, J. D. J. Bacteriol. 1996, 178, 6409-6418. Received for review April 22, 1997. Revised manuscript re- ceived November 14, 1997. Accepted November 18, 1997. ES970356J SCHEME 3. Proposed Metabolic Pathway for the Biodesulfurization of 4,6-DEDBT by Rhodococcus sp. Strain ECRD-1a a The bold arrows represent the actual sequential conversion observed by the SPME/GC-MS time study. 426 9 ENVIRONMENTAL SCIENCE & TECHNOLOGY / VOL. 32, NO. 3, 1998