Increasing the complexity of rice production systems through the addition of compost, azolla, ducks and fish resulted in higher rice yields and revenues compared to rice-only systems. More complex systems with multiple production factors had lower pest populations and higher rice plant growth rates. Total biomass and grain yields increased with greater system complexity, with the highest yields seen in systems with compost, azolla, ducks and fish. While more complex systems required upfront investment, these costs were offset by increased rice and animal sales revenues. Complex agricultural systems thus show potential to improve food security and farmer livelihoods in a sustainable manner.