This document describes the development of a method to analyze 10 common seized drugs using a single quadrupole mass spectrometer. A LC-MS method was optimized to separate and detect the drugs simultaneously using selected ion monitoring and in-source collision-induced dissociation for identification. Linear calibration curves were obtained for each drug from 0.1-1 μg/mL. The method demonstrated reproducibility and accuracy for rapid screening of multiple drugs.
The growth of, and the confidence in, hemp products will require applicable testing to ensure product quality and safety. Chromatography technology will play a large role in this as the technique is used for potency testing. This study optimizes a quantitative chromatographic determination of 15 cannabinoids using the Shimadzu Hemp Analyzer.
This presentation reports on the development of a GC FID method to accurately quantify ethanol and IPA concentrations in two hand sanitizer samples. By using nitrogen as the carrier gas, this method is cost-effective and ensures the product compliance with CDC and USP guidelines and regulations.
Haloacetic acids (HAAs) are known carcinogens that may occur as disinfection byproducts in drinking water. Traditionally these compounds were analyzed using helium (He) carrier gas, the cost of which has increased tremendously over the years. In this application, we explored using alternative hydrogen (H2) carrier gas to determine HAA concentrations according to EPA method 552.3.
Regardless of the source, assessing a crude oil or a fuel for unwanted or intentionally added elemental constituents is a critical part of a quality control protocol. This poster showcases the effectiveness of the ICPE-9820 for the analysis of three petrochemical samples according to ASTM D7111.
In this study, a new Shimadzu electrolytic suppressor was used as part of a Shimadzu modular IC system to determine inorganic anions according to methods EPA 300.
This presentation showcases two UHPLC-PDA methods to separate three isomers of tocopherol (vitamin E). The quick 5-minute method will allow for vitamin E identification and quantitation, while the 10-minute method will also allow for determination between nicotine or cannabinoid-based products.
The presence of Per- and Polyfluorinated Alkyl Substances (PFAS) in drinking water is being thoroughly studied due to the persistence of these compounds in the environment and their potential health effects. However, there is limited knowledge about the occurrence of these chemicals in bottled water, despite the increasing concerns about PFAS in the food supply. This poster shows results from a fast and simple direct injection method similar to draft EPA method 8237, using the Shimadzu triple quad LCMS-8050 to analyze seven commercially available samples of bottled water for 24 PFAS.
This application note describes the methodology and use of the Shimadzu ICPMS-2030 ICP mass spectrometer for the analysis of trace elements in drinking and fresh waters following the EPA 200.8 method. This method is also used for analysis of wastewater. Here, we demonstrate the stability and sensitivity of the ICPMS-2030 for EPA 200.8 analyses.
The growth of, and the confidence in, hemp products will require applicable testing to ensure product quality and safety. Chromatography technology will play a large role in this as the technique is used for potency testing. This study optimizes a quantitative chromatographic determination of 15 cannabinoids using the Shimadzu Hemp Analyzer.
This presentation reports on the development of a GC FID method to accurately quantify ethanol and IPA concentrations in two hand sanitizer samples. By using nitrogen as the carrier gas, this method is cost-effective and ensures the product compliance with CDC and USP guidelines and regulations.
Haloacetic acids (HAAs) are known carcinogens that may occur as disinfection byproducts in drinking water. Traditionally these compounds were analyzed using helium (He) carrier gas, the cost of which has increased tremendously over the years. In this application, we explored using alternative hydrogen (H2) carrier gas to determine HAA concentrations according to EPA method 552.3.
Regardless of the source, assessing a crude oil or a fuel for unwanted or intentionally added elemental constituents is a critical part of a quality control protocol. This poster showcases the effectiveness of the ICPE-9820 for the analysis of three petrochemical samples according to ASTM D7111.
In this study, a new Shimadzu electrolytic suppressor was used as part of a Shimadzu modular IC system to determine inorganic anions according to methods EPA 300.
This presentation showcases two UHPLC-PDA methods to separate three isomers of tocopherol (vitamin E). The quick 5-minute method will allow for vitamin E identification and quantitation, while the 10-minute method will also allow for determination between nicotine or cannabinoid-based products.
The presence of Per- and Polyfluorinated Alkyl Substances (PFAS) in drinking water is being thoroughly studied due to the persistence of these compounds in the environment and their potential health effects. However, there is limited knowledge about the occurrence of these chemicals in bottled water, despite the increasing concerns about PFAS in the food supply. This poster shows results from a fast and simple direct injection method similar to draft EPA method 8237, using the Shimadzu triple quad LCMS-8050 to analyze seven commercially available samples of bottled water for 24 PFAS.
This application note describes the methodology and use of the Shimadzu ICPMS-2030 ICP mass spectrometer for the analysis of trace elements in drinking and fresh waters following the EPA 200.8 method. This method is also used for analysis of wastewater. Here, we demonstrate the stability and sensitivity of the ICPMS-2030 for EPA 200.8 analyses.
The presentation describes the automated process of the system and present a number of applications from sample matrices such as food, polymers, and pharmaceuticals to show the utility of the system.
Cleaning validation is necessary to establish the quality and safety of pharmaceutical drug products. In cleaning validation protocols, direct sampling is performed with swabs, which are sticks with textiles at one end. The sample on the swab after swabbing the surface of equipment is analyzed with a TOC analyzer and HPLC. Recently, HPLC has been more preferable because of the growing need for the individual analysis of products. Before the HPLC analysis, manual processes such as a sample extraction and a sample condensation are required. Such manual processes may affect to the quality of results. Thus, we evaluated the application of a novel on-line supercritical fluid extraction/chromatography system for the cleaning validation.
For more information, go to ssi.shimadzu.com and follow us on Twitter @ShimdzuSSI
Plants concentrate metals by absorbing them from the soil in which they are grown. Some metals are beneficial and essential for life whereas other metals are highly toxic and have negative effects with even the lowest of levels. Because of their toxicity, quantification of these elements is needed. This application will investigate the preparation and analysis for heavy metals in Cascade Hops using Shimadzu AA-7000 with Graphite Furnace Atomic Absorption and Cold Vapor techniques.
EPA Method 200.7, Trace Elements in Water, Solids, and Biosolids by Inductively Coupled Plasma-Atomic Emission Spectrometry, describes the procedure and requirements for multi-element determinations by ICP-AES. This presentation demonstrates the capability of the ICPE-9820, with the ASC-9800 Auto-sampler and the Standard Addition Kit, to produce quick, accurate results that comply with the method.
Glycans in antibody drugs may play roles in the antigenicity, pharmacokinetics and high-order structural stability of drugs, which could adversely affect drug safety and effectiveness. It is therefore necessary to investigate which glycans are present in antibody pharmaceuticals. This presentation introduces an example of the analysis of glycans. For more information, go to ssi.shimadzu.com.
Recently, a new technique was introduced the allows the automated supercritical extraction and SFC analysis of samples with minimal sample preparation and handling requirements to save analyst time and sample preparation expenses. This presentation demonstrates how automated SFE-SFC can be a quick way to screen up to 48 soil samples for explosives in a variety of soil types with minimal sample prep. For more information, go to http://www.ssi.shimadzu.com/industry/industrypage.cfm?market_id=4. Thanks for viewing.
This presentation evaluates ASTM D7979-16 for the “direct” analysis of 30 PFCs and compares data to the solid-phase extraction EPA drinking water Method 537.
There is high demand for oxysterol quantitation due to their correlation with neurodegenerative diseases. The ratios of various oxysterols in biological fluids are used by researchers to study disease states. This application presents a fast, sensitive LC-MS/MS method using the LCMS-8060, with detection quantitation limits determined using multiple reaction monitoring mode for each analyte.
This application note demonstrates the analyses of residual solvents as described in USP<467> carried out with an HS-10 static headspace sampler and a Shimadzu Gas Chromatograph.
Outline of presentation:
Overview — Plating Baths and High Pressure Liquid Chromatography (HPLC)
Determination of Accelerator and Suppressor by HPLC and Charged Aerosol Detection
Sample Preparation, Calibration, Measurements
Comparisons to CVS data
Determination of Accelerator and Leveller by HPLC and Electrochemical Detection (ECD)
Coulometric Detection Mechanism and Design
Calibration and Measurements
Nickel Additives, Saccharin and Sodium Alkylsulfate
Gage Study Results
The feature of the new general chapter 621 is that a column packed with small particles can be used if column length and particle ratio (L/dp) is kept constant between the designated and modified column. This enables high speed analysis of USP methods more than ever.
In this study, a USP method was successfully transferred to an ultra-high speed method with the system suitability requirements met.
For more information, go to SSI.Shimadzu.com. Thanks for viewing.
Presentation Outline for Expanding Your High Performance Liquid Chromatography and Ultra High Performance Liquid Chromatography Capabilities with Universal Detection-Shedding Light on Non-Chromophore Compounds:
• Introduction to Charged Aerosol Detection
• How Charged Aerosol Technology Works
• Comparison with Evaporative Light Scattering Detectors
(ELSD)
• Examples of Applications
• Inverse Gradient Solution for Uniform Response
Current sample preparation techniques for PFAS analysis are laborious and not easily automated. In this study, supercritical fluid extraction (SFE) was evaluated as an alternative sample preparation technique for the extraction of eighteen PFAS compounds from fish tissue, as a preconcentration step prior to their analysis by LC-MS/MS.
Development and Validation of Novel RP-HPLC method for the estimation of Nalo...Bhavana Gundavarapu
The RP-HPLC method was developed and validated for quantitative determination of Naloxegol in pharmaceutical dosage forms. The method was validated with regard to linearity, accuracy, precision, selectivity, and robustness. The method was applied successfully for the determination of Naloxegol during kinetic studies in aqueous solutions (pH and thermal degradation).
This poster describes a GCMS purge-and-trap (P&T) method validation study conducted to evaluate operating conditions for the existing US EPA Method 624 VOC list, using updated technology and advanced GCMS instrumentation.
For more information, go to www.ssi.shimadzu.com and follow Shimadzu on Twitter at @ShimadzuSSI. Thanks for viewing.
The presentation describes the automated process of the system and present a number of applications from sample matrices such as food, polymers, and pharmaceuticals to show the utility of the system.
Cleaning validation is necessary to establish the quality and safety of pharmaceutical drug products. In cleaning validation protocols, direct sampling is performed with swabs, which are sticks with textiles at one end. The sample on the swab after swabbing the surface of equipment is analyzed with a TOC analyzer and HPLC. Recently, HPLC has been more preferable because of the growing need for the individual analysis of products. Before the HPLC analysis, manual processes such as a sample extraction and a sample condensation are required. Such manual processes may affect to the quality of results. Thus, we evaluated the application of a novel on-line supercritical fluid extraction/chromatography system for the cleaning validation.
For more information, go to ssi.shimadzu.com and follow us on Twitter @ShimdzuSSI
Plants concentrate metals by absorbing them from the soil in which they are grown. Some metals are beneficial and essential for life whereas other metals are highly toxic and have negative effects with even the lowest of levels. Because of their toxicity, quantification of these elements is needed. This application will investigate the preparation and analysis for heavy metals in Cascade Hops using Shimadzu AA-7000 with Graphite Furnace Atomic Absorption and Cold Vapor techniques.
EPA Method 200.7, Trace Elements in Water, Solids, and Biosolids by Inductively Coupled Plasma-Atomic Emission Spectrometry, describes the procedure and requirements for multi-element determinations by ICP-AES. This presentation demonstrates the capability of the ICPE-9820, with the ASC-9800 Auto-sampler and the Standard Addition Kit, to produce quick, accurate results that comply with the method.
Glycans in antibody drugs may play roles in the antigenicity, pharmacokinetics and high-order structural stability of drugs, which could adversely affect drug safety and effectiveness. It is therefore necessary to investigate which glycans are present in antibody pharmaceuticals. This presentation introduces an example of the analysis of glycans. For more information, go to ssi.shimadzu.com.
Recently, a new technique was introduced the allows the automated supercritical extraction and SFC analysis of samples with minimal sample preparation and handling requirements to save analyst time and sample preparation expenses. This presentation demonstrates how automated SFE-SFC can be a quick way to screen up to 48 soil samples for explosives in a variety of soil types with minimal sample prep. For more information, go to http://www.ssi.shimadzu.com/industry/industrypage.cfm?market_id=4. Thanks for viewing.
This presentation evaluates ASTM D7979-16 for the “direct” analysis of 30 PFCs and compares data to the solid-phase extraction EPA drinking water Method 537.
There is high demand for oxysterol quantitation due to their correlation with neurodegenerative diseases. The ratios of various oxysterols in biological fluids are used by researchers to study disease states. This application presents a fast, sensitive LC-MS/MS method using the LCMS-8060, with detection quantitation limits determined using multiple reaction monitoring mode for each analyte.
This application note demonstrates the analyses of residual solvents as described in USP<467> carried out with an HS-10 static headspace sampler and a Shimadzu Gas Chromatograph.
Outline of presentation:
Overview — Plating Baths and High Pressure Liquid Chromatography (HPLC)
Determination of Accelerator and Suppressor by HPLC and Charged Aerosol Detection
Sample Preparation, Calibration, Measurements
Comparisons to CVS data
Determination of Accelerator and Leveller by HPLC and Electrochemical Detection (ECD)
Coulometric Detection Mechanism and Design
Calibration and Measurements
Nickel Additives, Saccharin and Sodium Alkylsulfate
Gage Study Results
The feature of the new general chapter 621 is that a column packed with small particles can be used if column length and particle ratio (L/dp) is kept constant between the designated and modified column. This enables high speed analysis of USP methods more than ever.
In this study, a USP method was successfully transferred to an ultra-high speed method with the system suitability requirements met.
For more information, go to SSI.Shimadzu.com. Thanks for viewing.
Presentation Outline for Expanding Your High Performance Liquid Chromatography and Ultra High Performance Liquid Chromatography Capabilities with Universal Detection-Shedding Light on Non-Chromophore Compounds:
• Introduction to Charged Aerosol Detection
• How Charged Aerosol Technology Works
• Comparison with Evaporative Light Scattering Detectors
(ELSD)
• Examples of Applications
• Inverse Gradient Solution for Uniform Response
Current sample preparation techniques for PFAS analysis are laborious and not easily automated. In this study, supercritical fluid extraction (SFE) was evaluated as an alternative sample preparation technique for the extraction of eighteen PFAS compounds from fish tissue, as a preconcentration step prior to their analysis by LC-MS/MS.
Development and Validation of Novel RP-HPLC method for the estimation of Nalo...Bhavana Gundavarapu
The RP-HPLC method was developed and validated for quantitative determination of Naloxegol in pharmaceutical dosage forms. The method was validated with regard to linearity, accuracy, precision, selectivity, and robustness. The method was applied successfully for the determination of Naloxegol during kinetic studies in aqueous solutions (pH and thermal degradation).
This poster describes a GCMS purge-and-trap (P&T) method validation study conducted to evaluate operating conditions for the existing US EPA Method 624 VOC list, using updated technology and advanced GCMS instrumentation.
For more information, go to www.ssi.shimadzu.com and follow Shimadzu on Twitter at @ShimadzuSSI. Thanks for viewing.
This presentation describes a method for extraction, identification, and quantitation of cocaine on paper money from nine different geographical areas, including five samples from the United States. We used the Shimadzu GCMS-TQ8040 triple quadrupole mass spectrometer with Multiple Reaction Monitoring (MRM) monitoring mode.
This poster describes analytical operating conditions for analysis of US EPA Method 8260C1, Revision 3, August 2006, and includes BFB tune parameters, calibration details, and a complete MDL and Precision and Accuracy study for almost 100 target compounds at multiple concentrations.
This presentation presents a method using a high-resolution Q-TOF LCMS to investigate extractables and leachables in a plastic sandwich bag, clear plastic cup, and aluminum foil.
Total workflow solutions that cater every budget, performance or throughput requirement for confirmatory dioxin analysis were discussed in the Thermo Scientific Lunch Seminar at the Dioxin 2014 conference. D. Hope, CEO & Owner Pacific Rim Laboratoris, presented about the economies of POPs analysis from the point of view of a leading laboratory using the very latest dioxin method kits. C. Cojocariu, Thermo Fisher Scientific, discussed recent changes in EU regulations which bring new opportunities for more labs to participate in dioxin analysis and about validating methods using Gas Chromatography triple quadrupole for PCDD/Fs with reference to the new EU Commission Regulation No. 709/2014.
Analysis of Quaternary Ammonium Compounds (QACs) as Possible Disinfectant Res...PerkinElmer, Inc.
Quaternary ammonium compounds (QACs) have the basic structure NR4+. Those possessing R groups with long alkyl chains are known to be especially effective as antimicrobial agents and particularly useful for the disinfection of containers and surfaces. This is particularly relevant in the milk industry, as QACs are typically used to disinfect the insides of tanks used for transporting milk from farms to processing plants. If significant QAC residues are left behind after tank disinfection, these compounds may leach into the milk and, ultimately, may get into the store-bought milk supplies at levels compromising personal health. Recent data points to nearly 12% of all monitored milk to be tainted with QACs. The primary QACs that may be found in milk are benzyldimethyldodecylammonium chloride (BAC 12), benzyldimethyltetradecylammonium chloride (BAC 14), benzyldimethylhexadecyl ammonium chloride (BAC 16) and didecyldimethylammonium chloride (DDAC). This application note presents an LC-TOF (time-of-flight) method for the analysis of the four
most common QACs that may be found in milk (a rather complex matrix), with relatively little sample preparation.
This presentation provides an overview of GCMS functionality, modes, benefits and applications in the environmental lab. For more information, go to www.ssi.shimadzu.com.
This poster shows an HPLC method which builds on the well-established potency method using the Shimadzu Cannabis Analyzer for Potency™, a comprehensive and fast determination of 21 cannabinoids in only 15 minutes (including the wash-step). Cannabinoid profiles for commercially available dry hemp and finished tinctures are presented.
It is widely known that toxic metals can be found in some foods because they are naturally present in the Earth’s crust and can be released as pollutants into the water and soil used to grow food and through the food manufacturing and packaging processes. Exposure to these metals at an early age has been linked to developmental problems, behavior issues, and attention deficit hyperactivity disorder. The levels of toxic metals in baby foods are therefore more of a concern and require strict safety controls from raw materials to finished products. In this work, we explore and discuss the applicability of the Shimadzu inductively coupled plasma-mass spectrometer (Shimadzu ICPMS-2030) to the quantification of As, Cd, Hg and Pb in selected baby foods at this very low limit ranges.
Many people pursue ideas of “efficiency” as an ideal for daily life; the same can be true in the HPLC laboratory. In this work, we demonstrate the efficiency, throughput, and reliability of a dual injection system for finished pharmaceutical products and in-process active pharmaceutical ingredients
In this study, analysis of DRO and ORO (C10-C40) were performed using a Shimadzu GC-FID equipped with fast temperature programmable (FTP) column that aim to significantly reduce the run time for this analysis.
Infrared microscopy, also referred to as FTIR microscopy, is ideal for identification of trace evidence in forensics and characterizing small particles in wide varieties of other fields. Combining the accurate material and chemical identification of FTIR spectroscopy with the ability to focus directly on micro-sized particles, makes this an indispensable technique. This presentation provides a couple of examples related to drug analysis and identification of explosives.
Multi-layered materials are commonly used in various industries and may alter the mechanical, acoustic and optical properties of materials. Identifying the chemical composition of different layers by studying the cross section of a multi-layered film is important in research and development of composite materials. This presentation showcases the use of an FTIR microscope to acquire high-resolution data of the cross section of composite films. Analysis of the FTIR spectra helps to understand the formulation of different layers of polymer film.
The hazardous impact of microplastics in aquatic environments calls for more scientific research to understand their occurrence, effects and mitigation strategies. This work describes the analysis of primary and secondary microplastics using FTIR and FTIR microscopy techniques.
Analysis for and quantification of sulfur in crude oil, natural gas, petrochemicals, and industrial chemicals is critical to ensuring quality, process control, and safety for refinery, processors, and users. Understanding the speciation and concentration of sulfur compounds is vital in the hydrocarbon processing industry. Gas chromatography with sulfur chemiluminescence detection (GC-SCD) is one of the most powerful tools for sulfur analysis of hydrocarbons. This poster showcases the use of a new SCD for analysis according to various ASTM methods.
Multiple Federal and State Agencies (e.g. EPA, DOD, DEQs and DEPs) in the United States as well as international organizations (e.g. ASTM) are quickly publishing new analytical methodologies for PFAS monitoring and establishing more stringent limits. Liquid Chromatography with Mass Spectrometry-based detection is established as the most suitable technology for meeting the requirements from official methods released up to date for monitoring PFAS. A comparison of instruments’ performance was conducted in this work.
Using a custom script and robotic autosampler with syringe swap capability, a protocol was developed to automatically prepare calibration and check standards, perform internal standard addition, and perform headspace (HS) injections into a GCMS. This study presents the quantitative accuracy and reproducibility results of four analytes tested using GCMS in combination with the AOC-6000 multifunction robotic autosampler.
Tensile testing is one method routinely used to determine the mechanical properties of plastics. This piece presents an example of measuring the mechanical properties of acrylonitrile butadiene styrene (ABS), Polyoxymethylene (POM), Polyethylene terephthalate (PET) and polystyrene (PS)
Like cannabis, hemp oil may be analyzed easily and effectively for its cannabinoid content. This application note highlights the use of a High Sensitivity HPLC method to determine 11 important cannabinoids, including CBD, in hemp oil.
Gunshot residue (GSR) is the collective name of the complex mixture of organic and inorganic particles originating from the firearm, the firearm ammunition and the combustion products. Current testing methods primarily employ the use of scanning electron microscopy, which places the lead focus on inorganic components. Utilizing Gas Chromatography/Mass Spectrometry to identify unknown organic compounds creates a powerful tool in the forensics market, specifically GSR. This presentation examines using thermal desorption to extract residue constituents from articles of clothing to determine if it could be an effective technique in analyzing GSR for forensic analysis.
This high performance liquid chromatograph (HPLC) is the first-ever instrument designed specifically for quantitative determination of cannabinoid content. Ready for use after one day of installation and testing, it provides a choice of three different HPLC methods and a dedicated user interface for a simplified workflow.
Sensitive and selective detection of chemical residues in hops is necessary to ensure protection of consumers and the environment. Methods using LC-MS provide efficient and effective detection of chemical residues in a complex sample matrix such as hops. Presented here is an LC-MS method for detection of over 150 analytes in hops and a market survey of over 50 different hops pellets samples.
Observation of Io’s Resurfacing via Plume Deposition Using Ground-based Adapt...Sérgio Sacani
Since volcanic activity was first discovered on Io from Voyager images in 1979, changes
on Io’s surface have been monitored from both spacecraft and ground-based telescopes.
Here, we present the highest spatial resolution images of Io ever obtained from a groundbased telescope. These images, acquired by the SHARK-VIS instrument on the Large
Binocular Telescope, show evidence of a major resurfacing event on Io’s trailing hemisphere. When compared to the most recent spacecraft images, the SHARK-VIS images
show that a plume deposit from a powerful eruption at Pillan Patera has covered part
of the long-lived Pele plume deposit. Although this type of resurfacing event may be common on Io, few have been detected due to the rarity of spacecraft visits and the previously low spatial resolution available from Earth-based telescopes. The SHARK-VIS instrument ushers in a new era of high resolution imaging of Io’s surface using adaptive
optics at visible wavelengths.
This pdf is about the Schizophrenia.
For more details visit on YouTube; @SELF-EXPLANATORY;
https://www.youtube.com/channel/UCAiarMZDNhe1A3Rnpr_WkzA/videos
Thanks...!
Introduction:
RNA interference (RNAi) or Post-Transcriptional Gene Silencing (PTGS) is an important biological process for modulating eukaryotic gene expression.
It is highly conserved process of posttranscriptional gene silencing by which double stranded RNA (dsRNA) causes sequence-specific degradation of mRNA sequences.
dsRNA-induced gene silencing (RNAi) is reported in a wide range of eukaryotes ranging from worms, insects, mammals and plants.
This process mediates resistance to both endogenous parasitic and exogenous pathogenic nucleic acids, and regulates the expression of protein-coding genes.
What are small ncRNAs?
micro RNA (miRNA)
short interfering RNA (siRNA)
Properties of small non-coding RNA:
Involved in silencing mRNA transcripts.
Called “small” because they are usually only about 21-24 nucleotides long.
Synthesized by first cutting up longer precursor sequences (like the 61nt one that Lee discovered).
Silence an mRNA by base pairing with some sequence on the mRNA.
Discovery of siRNA?
The first small RNA:
In 1993 Rosalind Lee (Victor Ambros lab) was studying a non- coding gene in C. elegans, lin-4, that was involved in silencing of another gene, lin-14, at the appropriate time in the
development of the worm C. elegans.
Two small transcripts of lin-4 (22nt and 61nt) were found to be complementary to a sequence in the 3' UTR of lin-14.
Because lin-4 encoded no protein, she deduced that it must be these transcripts that are causing the silencing by RNA-RNA interactions.
Types of RNAi ( non coding RNA)
MiRNA
Length (23-25 nt)
Trans acting
Binds with target MRNA in mismatch
Translation inhibition
Si RNA
Length 21 nt.
Cis acting
Bind with target Mrna in perfect complementary sequence
Piwi-RNA
Length ; 25 to 36 nt.
Expressed in Germ Cells
Regulates trnasposomes activity
MECHANISM OF RNAI:
First the double-stranded RNA teams up with a protein complex named Dicer, which cuts the long RNA into short pieces.
Then another protein complex called RISC (RNA-induced silencing complex) discards one of the two RNA strands.
The RISC-docked, single-stranded RNA then pairs with the homologous mRNA and destroys it.
THE RISC COMPLEX:
RISC is large(>500kD) RNA multi- protein Binding complex which triggers MRNA degradation in response to MRNA
Unwinding of double stranded Si RNA by ATP independent Helicase
Active component of RISC is Ago proteins( ENDONUCLEASE) which cleave target MRNA.
DICER: endonuclease (RNase Family III)
Argonaute: Central Component of the RNA-Induced Silencing Complex (RISC)
One strand of the dsRNA produced by Dicer is retained in the RISC complex in association with Argonaute
ARGONAUTE PROTEIN :
1.PAZ(PIWI/Argonaute/ Zwille)- Recognition of target MRNA
2.PIWI (p-element induced wimpy Testis)- breaks Phosphodiester bond of mRNA.)RNAse H activity.
MiRNA:
The Double-stranded RNAs are naturally produced in eukaryotic cells during development, and they have a key role in regulating gene expression .
Nutraceutical market, scope and growth: Herbal drug technologyLokesh Patil
As consumer awareness of health and wellness rises, the nutraceutical market—which includes goods like functional meals, drinks, and dietary supplements that provide health advantages beyond basic nutrition—is growing significantly. As healthcare expenses rise, the population ages, and people want natural and preventative health solutions more and more, this industry is increasing quickly. Further driving market expansion are product formulation innovations and the use of cutting-edge technology for customized nutrition. With its worldwide reach, the nutraceutical industry is expected to keep growing and provide significant chances for research and investment in a number of categories, including vitamins, minerals, probiotics, and herbal supplements.
A brief information about the SCOP protein database used in bioinformatics.
The Structural Classification of Proteins (SCOP) database is a comprehensive and authoritative resource for the structural and evolutionary relationships of proteins. It provides a detailed and curated classification of protein structures, grouping them into families, superfamilies, and folds based on their structural and sequence similarities.
Professional air quality monitoring systems provide immediate, on-site data for analysis, compliance, and decision-making.
Monitor common gases, weather parameters, particulates.
Seminar of U.V. Spectroscopy by SAMIR PANDASAMIR PANDA
Spectroscopy is a branch of science dealing the study of interaction of electromagnetic radiation with matter.
Ultraviolet-visible spectroscopy refers to absorption spectroscopy or reflect spectroscopy in the UV-VIS spectral region.
Ultraviolet-visible spectroscopy is an analytical method that can measure the amount of light received by the analyte.
THE IMPORTANCE OF MARTIAN ATMOSPHERE SAMPLE RETURN.Sérgio Sacani
The return of a sample of near-surface atmosphere from Mars would facilitate answers to several first-order science questions surrounding the formation and evolution of the planet. One of the important aspects of terrestrial planet formation in general is the role that primary atmospheres played in influencing the chemistry and structure of the planets and their antecedents. Studies of the martian atmosphere can be used to investigate the role of a primary atmosphere in its history. Atmosphere samples would also inform our understanding of the near-surface chemistry of the planet, and ultimately the prospects for life. High-precision isotopic analyses of constituent gases are needed to address these questions, requiring that the analyses are made on returned samples rather than in situ.
THE IMPORTANCE OF MARTIAN ATMOSPHERE SAMPLE RETURN.
Identification and Confirmation of Ten Common Seized Drugs Utilizing a Single Quadrupole Mass Spectrometer
1. Identification and Confirmation of Ten
Common Seized Drugs Utilizing a
Single Quadrupole Mass
Spectrometer
Shimadzu Scientific Instruments, Columbia, MD
2. Introduction
The use of illicit drugs continues to be an epidemic across the United States. Currently,
most laboratories require the use of a GC or GCMS system and a cumbersome
derivatization step to analyze seized drugs.
By utilizing a LCMS method, faster detection rates and a larger drug panel could be
screened simultaneously. The need for a derivatization step could also be avoided.
3. Instrumentation
A Shimadzu LCMS-2020 single quadrupole mass spectrometer coupled with an
integrated LC-2040C 3D UHPLC system was employed for this evaluation. The LC-
2040C 3D was equipped with a PDA detector for simultaneous analysis of analyte
absorbance and compound ionization.
4. Method Development
Ten common seized and illicit drugs were analyzed using a single quadrupole mass
spectrometer, LCMS-2020, with electrospray ionization (ESI) in positive mode. A
mixture of all 10 analytes was prepared using certified reference materials purchased
from Cayman Chemical. Each standard was dissolved in LCMS grade water and
diluted to 10ug/mL for initial testing.
A 1uL injection volume was used with Shimadzu’s NexLeaf CBX Potency II column
(100mm x 3.0mm, 1.8um) for complete baseline separation of all 10 analytes. Gradient
elution was required with mobile phase A being water and Mobile phase B being
Methanol both with 5mmol ammonium formate and 0.1% formic acid (Figure 1).
Time %B
0 20
7.5 95
10 95
10.01 20
15 20Figure 1: LC Gradient Parameters
5. The overall runtime was 15 minutes and utilized selected ion monitoring (SIM) for
quantitation and scanning with in-source collision-induced dissociation (in-source CID)
for identification and secondary confirmation. The scan event used a scan range of 50
to 500 m/z with a scan speed of 5000 u/sec. LCMS method parameters and the final
SIM channels used can be found in Table 1.
Calibration curves were prepared with neat standards ranging from 0.1ug/mL to
1ug/mL. The corresponding SIM channel for each analyte was used for external
calibration.
Method Development
Drying Gas 10.0 L/min
Interface Temperature 350°C
DL Temperature 250°C
Heat Block Temperature 400°C
Flow rate 0.3 mL/min
Column Oven
Temperature
40°C
Sample Tray Temperature 10°C
SIM Channels (m/z)
337.2; 323.2; 286.1;
328.1; 205.1; 370.1;
304.1; 150.2; 256.2
Table 1: LCMS-2020
Method parameters
6. Results and Discussion
A Shimadzu LCMS-2020 was used to create a SIM method for 10 common drugs
generally run by GCMS. In addition to a SIM method demonstrating chromatographic
separation (Figure 2) a scan event was added to monitor in-source fragmentation.
Figure 2: Representative SIM Chromatogram for 10 common seized drugs at 1ug/mL
7. Results and Discussion
Figure 3: Scan and in-source CID spectra for Naloxone and 6-MAM at 1ug/mL. Top spectrum is a
positive scan event with 0V, bottom spectrum is a positive scan event with 60V in-source CID
Two different Q-Array voltages were applied to fragment all of the analytes of interest,
60V and 75V. Naloxone and 6-MAM have the same mass and therefore could only be
differentiated using retention time. With simultaneous in-source CID, additional
identification could be completed by comparing the fragmentation patterns produced
(Figure 3). Fragments m/z 310.05 and 268.10 are only seen with Naloxone and are not
produced for 6-MAM.
8. Results and Discussion
Figure 4: SIM and in-source CID spectra for Acetyl Fentanyl at 1ug/mL. A.) Spectrum from SIM event,
B.) Spectrum from scan event with 60V in-source CID on LCMS-2020, C.) Spectrum from Metlin
Database1
in-source CID was also used for secondary confirmation. Figure 4 shows a comparison
of the fragmentation pattern produced using in-source CID versus a known library
spectrum from Metlin’s database1.
105.1
188.15
9. Results and Discussion
All calibration curves demonstrated linearity with a range from 0.1ug/mL to 1ug/mL.
Final calibration curves were determined by plotting peak area versus concentration
with a 1/C weighting factor. A correlation coefficient, R2=0.996 or better was obtained
for all analytes. Representative chromatograms and calibration curves for each analyte
can be seen in Figure 5.
All calibration curves were run in triplicate to evaluate reproducibility and accuracy. The
final method demonstrated peak area RSDs ranging from 0.15 to 1.40% with the
average accuracies between 93 and 106% for every compound.
12. Conclusion
A single chromatographic method was developed for the separation and quantitation of
ten common seized drugs. The single quadrupole mass spectrometer, LCMS 2020,
demonstrated its capability for simultaneous detection and confirmation using in source
fragmentation of all analytes. Linear calibration curves were acquired for each analyte.
Further method development could be explored to increase the panel of drugs being
screened as well as determining LOQs for each analyte of interest.
Reference
1. Smith CA, O'Maille G, Want EJ, Qin C, Trauger SA, xonBrandon TR, Custodio DE, Abagyan
R, Siuzdak G. METLIN: a metabolite mass spectral database. Ther Drug Monit [Internet].
2005;27 :747-51.
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