GraphGen: Conducting Graph Analytics over Relational Databases

GraphGen: Conducting
Graph Analytics over
Relational Databases
Konstantinos Xirogiannopoulos
Amol Deshpande

collaborated
Name:
Konstantinos
Name:
Amol
Name: University of MarylandName: PyData DC
Year: 2016
gave_talk
works_at
works_at

Graph Analytics:
(Network Science)
Leveraging of connections between
entities in a network towards gaining
insight about said entities and/or the
network via the use of graph
algorithms.

1) Why graph analytics?
2) How are graph analytics done currently?
3) What are most people dealing with?
4) Bolt-on graph analytics with GraphGen
5) The GraphGen Language

Graphs Across Domains
Protein-protein
interaction networks
Financial transaction
networks
Stock Trading Networks
Social Networks
Federal Funds Networks
Knowledge Graph
World Wide Web
Communication
Networks
Citation Networks
…...
http://go.umd.edu/graphs

Example Use cases
● Financial crimes
(e.g. money
laundering)
● Fraudulent
transactions
● Cybercrime
● Counterterrorism
● Key players in a
network
● Ranking entities (web
pages, PageRank)
● Providing connection
recommendations to
users
● Optimizing
transportation
routes
● Identifying
weaknesses in
power grids, water
grids etc.
● Computer networks
● Medical Research
● Disease pathology
● DNA Sequencing

2) How are graph analytics
done currently?

Types of Graph Analytics
● Graph “queries”: Subgraph pattern matching, shortest
paths, temporal queries
● Real Time Analytics: Anomaly/Event detection, online
prediction
● Batch Analytics (Network Science): Centrality analysis,
community detection, network evolution
● Machine Learning: Matrix factorization, logistic
regression modeled as message passing in specially
structured graphs.

State of the art
● Graph Analytics tasks are too widely varied
● There is no one-size-fits-all solution
○ RDBMS/Hadoop/Spark have their tradeoffs
● Fragmented area with little consensus
❖ Specialized graph databases (Neo4j, Titan, Blazegraph, Cayley,Dgraph)
❖ RDF stores (Allegrograph, Jena)
❖ Bolt-on solutions (Teradata SQL-Graph, SAP Graph Engine,
Oracle)
❖ Distributed batch processing systems (Giraph, GraphX,
GraphLab) Lots of ETL required!
❖ Many more research prototypes...

Different Analytics Flows
Other SystemsGraph Databases Bolt-On Solutions

What should I use then??
● What fraction of the overall workload is
graph-oriented?
● How often are some sort of graph analytics
required to run?
● Do you need to do graph updates?
● What types of analytics are required?
● How large would the graphs be?
● Are you starting from scratch or do you have an
already deployed DBMS?

3) What are most people
dealing with?

● Most business analytics (querying, reporting,
OLAP) happen in SQL
● Organizations typically model their data
according to their needs
● Graph databases if you have strictly
graph-centric workloads
Where’s the Data?

Where’s the Data?
● Most likely organized in some type of database schema
● Collection of tables related to each-other through
common attributes, or primary, foreign-key constraints.
We need to extract connections between entities

Lots of “hidden” graphs
● Let’s take TPC-H.
part_key
Part
supplier_key
...
customer_key
Customer
customer_name
...
order_key
Orders
part_key
customer_key
...
supplier_key
Supplier
supplier_name
...
● We could create edges
between two customers if
they’ve:
○ Bought the same item
○ Bought the same item on
the same day
○ Bought from the same
supplier
○ Etc.

4) Bolt-on graph analytics
with GraphGen

GraphGen
Extract and analyze
many different kinds
of graphs
Simple, Intuitive,
Declarative Language,
No ETL required
Full Graph API & Vertex
Centric Framework

GraphGen Interfaces
Native Java LibraryPython wrapper LibraryGraphGen Explorer: UI
Web Application

● Exploration of database schema to detect
different types of hidden graphs.
● Allows users to visually explore potential
graphs.
● Simple statistic and on-the-fly analysis
Not all graphs will be useful!
GraphGen Explorer Web App

from graphgenpy import GraphGenerator
import networkx as nx
datalogQuery = """
Nodes(ID, Name) :- Author(ID, Name).
Edges(ID1, ID2) :- AuthorPublication(ID1, PubID), AuthorPublication(ID2, PubID).
"""
# Credentials for connecting to the database
gg = GraphGenerator("localhost","5432","testgraphgen","kostasx","password")
fname = gg.generateGraph(datalogQuery,"extracted_graph",GraphGenerator.GML)
G = nx.read_gml(fname,'id')
print "Graph Loaded into NetworkX! Running PageRank..."
# Run any algorithm on the graph using NetworkX
print nx.pagerank(G)
print "Done!"
Define GraphGen Query
Database Credentials
Generate and
Serialize Graph
Load Graph into
NetworkX
Run Any Algorithm

// Establish Connection to Database
GraphGenerator ggen = new GraphGenerator("host", "port", "dbName",
"username", "password");
// Define and evaluate a single graph extraction query
String datalog_query = "...";
Graph g = ggen.generateGraph(datalog_query).get(0);
// Initialize vertec-centric object
VertexCentric p = new VertexCentric(g);
// Define vertex-centric compute function
Executor program = new Executor("result_value_name") {
@Override
public void compute(Vertex v, VertexCentric p) {
// implementation of compute function
}
};
// Begin execution
p.run(program);
Extract and Load
Graph
Define Vertex
Centric Program
Run Program

// Establish Connection to Database
GraphGenerator ggen = new GraphGenerator("host", "port", "dbName",
"username", "password");
// Define and evaluate a single graph extraction query
String datalog_query = "...";
Graph g = ggen.generateGraph(datalog_query).get(0);
for (Vertex v : g.getVertices()) {
// For each neighbor
for (Vertex neighbor : v.getVertices(Direction.OUT)) {
// Do something
}
}
Extract and Load
Graph
Use Full API to
access the Graph

GraphGen Back-End Architecture

GraphGen DSL
● Intuitive Domain Specific Language based on Datalog
● User needs to specify:
○ How the nodes are defined
○ How the edges are defined
● The query is executed, and the user gets a Graph object
to operate upon.
● Very expressive: Allows for homogeneous and
heterogeneous graphs with various types of nodes and
edges.

TPC-H Database
partKey
Part
supplierKey
...
customerKey
Customer
customerName
...
● We want to explore a
graph of customers!
● Using the GraphGen
Language:
○ Which tables do
we need to
combine to extract
the nodes and
edges
orderKey
Orders
partKey
customerKey
...
supplierKey
Supplier
supplierName
...

GraphGen DSL Example
Nodes(ID, Name) :- Customer(ID, Name).
● Creates a node out of each row in the Customer table
■ Customer ID and Name as properties
Edges(ID1, ID2) :-
Orders(_,partKey, ID1), Orders(_,partKey, ID2).
● Connect ID1 -> ID2 if they have both ordered the same part

GraphGen
● Enable extraction of
different types of hidden
graphs
● Independent of where the
data is stored (given SQL)
● Enable complex analytics
over the extracted graphs
● Efficient extraction
through various
in-memory
representations
● Efficient analysis
through a parallel
execution engine
● Effortless through a
Declarative Language
● Eliminates the need
for complex ETL
● Intuitive and swift
analysis of any graph
that exists in your
data!

Download GraphGen at:
konstantinosx.github.io/graphgen-project/
DDL Blog Post at:
blog.districtdatalabs.com/graph-analytics-over-relational-datasets

Email: kostasx@cs.umd.edu
Twitter: @kxirog
Download GraphGen at:
konstantinosx.github.io/graphgen-project/
Thank you!

GraphGen: Conducting Graph Analytics over Relational Databases

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