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FPPH – ongoing work of relevance to Phytothreats
1
Glyn Jones, Barbara Agstner, & James Rainford
Fera Science Ltd
1. Early warning system/pathways analysis
2. Industry data
3. Cost and responsibility sharing/assurance scheme
development
2
3
Data Input
Compile data from
source for use in
system
Standardisation
Making the data
so that it can be
referenced in a
common way
Analysis
Making models and labelling data
to aid interpretation
Visualisation
Allowing users to select and view data and
analysis results in a way that is
informative
Decision
User takes action based on
the information presented
Import/Export data:
Commext
Exchange rate:
ECB
FERA Trade
database
Detection of Trade Warnings
(FERA generic)
?
Detection of Trade Anomalies
(Specific for plant EWS)
Development Indicators:
World Bank
Historic Interception:
Europhyt eDiag
Other indicators from
Pathways project
Local database
Predicting Risk by Country
(Random Forest/LASSO
regression)
Matching anomalies to interception
records
Dashboard app
Trade Networks
Visualising Risk
by Country
Trade Warnings
Visualising Trade Data
Anomalous Trade in Plant Products
Visualising Indicators
Plant Health Risks by Country
Tariffs: TARIC
Aubergine case study
1. Structure of the Pathways/EWS System
2. Industry data
• “How much lavender do we
import?”
• National data = rubbish
• Business data - it’s complicated ……
• One company – 240k combinations
of species and specification
• Trade data is dynamic!
• But needed for
• Better system biosecurity
• Industry growth
4
Species source over 5 quarters
5
6
7
8
9
3. Cost & responsibility
Getting estimates of biosecurity costs (Barbara’s road trip)
10
Dove Associates
11
Emergence of industry schemes over time
Mid
90s
2012 2016 2018
Legal, quality
and
environmental
standards
PH
Alliance
PHAS
UKSG
Plant
Healthy
Chalara ash dieback Xylella
British timber
Plant health focus
(link to previous schemes)
Don’t risk it
1st November 2018
Plant health in the
supply chain
Standards and assurance
Slides from HTA and Grown in Britain – not for distribution

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Glyn Jones wp2 Nov 2018

  • 1. FPPH – ongoing work of relevance to Phytothreats 1 Glyn Jones, Barbara Agstner, & James Rainford Fera Science Ltd
  • 2. 1. Early warning system/pathways analysis 2. Industry data 3. Cost and responsibility sharing/assurance scheme development 2
  • 3. 3 Data Input Compile data from source for use in system Standardisation Making the data so that it can be referenced in a common way Analysis Making models and labelling data to aid interpretation Visualisation Allowing users to select and view data and analysis results in a way that is informative Decision User takes action based on the information presented Import/Export data: Commext Exchange rate: ECB FERA Trade database Detection of Trade Warnings (FERA generic) ? Detection of Trade Anomalies (Specific for plant EWS) Development Indicators: World Bank Historic Interception: Europhyt eDiag Other indicators from Pathways project Local database Predicting Risk by Country (Random Forest/LASSO regression) Matching anomalies to interception records Dashboard app Trade Networks Visualising Risk by Country Trade Warnings Visualising Trade Data Anomalous Trade in Plant Products Visualising Indicators Plant Health Risks by Country Tariffs: TARIC Aubergine case study 1. Structure of the Pathways/EWS System
  • 4. 2. Industry data • “How much lavender do we import?” • National data = rubbish • Business data - it’s complicated …… • One company – 240k combinations of species and specification • Trade data is dynamic! • But needed for • Better system biosecurity • Industry growth 4
  • 5. Species source over 5 quarters 5
  • 6. 6
  • 7. 7
  • 8. 8
  • 9. 9
  • 10. 3. Cost & responsibility Getting estimates of biosecurity costs (Barbara’s road trip) 10
  • 12. Emergence of industry schemes over time Mid 90s 2012 2016 2018 Legal, quality and environmental standards PH Alliance PHAS UKSG Plant Healthy Chalara ash dieback Xylella British timber Plant health focus (link to previous schemes) Don’t risk it
  • 13. 1st November 2018 Plant health in the supply chain Standards and assurance Slides from HTA and Grown in Britain – not for distribution

Editor's Notes

  1. Diagram shows the two parts of the Pathways app in terms of the underlying data and processing. The aim is both to review the system and illustrate how the decision process needs to be understood to shape the rest of the pipeline. The grey boxes are parts of the application discussed or partially developed in the first phases but which are not fully integrated into the system as it currently exists. Tariff data was investigated but as yet we don’t have a satisfactory way of standardising it to work with the rest of the database conventions The specific EWS system allows on to run the EWS technology on data which may include other indices from the local database. This is all set up but as yet there has been no use case established and no visualisations developed Trade network visualisations were in development at the very end of the project and there was a plan to integrate them into the app but this wasn’t achieved before the deadline.