This study analyzed the spatial and temporal patterns of dengue incidence in Trinidad from 1998-2004 using geographic information systems. The main findings were:
1) Dengue cases became more concentrated in space and time leading up to outbreaks, with decreased distances between cases.
2) When outbreaks occurred, cases spread more rapidly both spatially and temporally across the country.
3) There was a general pattern of dengue incidents moving from rural to urban areas leading up to outbreaks, with "hotspots" located near major transportation hubs.
The Gibraltar COVID-19 Cohort: Determining the True Incidence and Severity Ra...asclepiuspdfs
COVID-19 is a new infectious disease with an unclear incidence and an unknown rate of progression to severe disease. The Gibraltar COVID-19 Cohort utilises two distinct cohorts - a clinical cohort and a random population based cohort -, to provide an accurate assessment of case severity rate. Design: Retrospective analysis of a SARS-CoV2 RT-PCR point prevalence study and a RT-PCR confirmed positive clinical case cohort to calculate case severity rates. Settings and Participants: Over a three day period nasopharyngeal swabs were sampled from a randomly selected 1.2% of the population of Gibraltar and then analysed via RT-PCR to determine the background incidence of COVID-19 infection. The results were then analysed and compared to the clinical case cohort. The rate of progression to severe COVID-19 disease in those with COVID-19 infection was then calculated.
Guidelines for Management of Outbreak in Healthcare Organizationdrnahla
Guidelines for Management of Outbreak in Healthcare Organization
Dr. NAHLA ABDEL KADERوMD, PhD.
INFECTION CONTROL CONSULTANT, MOH
INFECTION CONTROL CBAHI SURVEYOR
Infection Control Director, KKH.
Dynamics and Control of Infectious Diseases (2007) - Alexander Glaser Wouter de Heij
See also:
- https://food4innovations.blog/2020/03/26/montecarlo-simulaties-tonen-aan-wat-de-onzekerheid-is-en-dat-we-minimaal-1600-maar-misschien-wel-2000-2500-ic-plaatsen-nodig-hebben/
The Importance of Asymptomatic Coronavirus Disease-19 Patients: Never Trust a...asclepiuspdfs
The asymptomatic infectious case is a “silent client,” one of the most complex and damaging types of client: It is someone who does not provide information; of which we have no information. The silent client, as in the asymptomatic infection, can undermine the business by apparently not being able to address the problem. So how do you manage silent clients, asymptomatic cases? Identifying the points where asymptomatic (silent) cases occur and addressing the situation from a comprehensive perspective. This includes: (1) Preventing contagion and interrupting the transmission process immediately after contact with the virus: Test system, trace, and public health measures: Polymerase chain reaction testing on as many people as possible who have been in contact with infected people which allows the isolation of infected and the tracking and quarantine of their contacts; (2) universal public health measures: Wear a mask in public, wash your hands regularly, stay home when sick, keep a physical distance, and avoid meeting people outside of your home; (3) being so strict with negative cases as with positive ones: The consequences of high rates of false negatives are serious because they allow asymptomatic – and symptomatic – people to transmit diseases; follow-up is recommended, from a clinical point of view – epidemiological, as strict to negative cases as to positive ones; (4) trace back the contacts of the positive cases: search the source of a new case, together with the contacts of that person; and (5) massive and opportunistic tests for the detection of general and specific populations: Rapid response tests for coronavirus disease-19 available to everyone, especially those without symptoms, carried out as mass population screening, to certain groups such as health workers and students, as detection opportunistic in the general practitioner’s consultation, and even self-administered by anyone.
Impact of road networks on the distribution of dengue fever cases in Trinidad...rsmahabir
This study examined the impact of road networks on the distribution of dengue fever cases in Trinidad, West Indies. All confirmed cases of dengue hemorrhagic fever (DHF) observed during 1998 were georef- erenced and spatially located on a road map of Trinidad using Geographic Information Systems software. A new digital geographic layer representing these cases was created and the distances from these cases to the nearest classified road category (5 classifications based on a functional utility system) were examined. The distance from each spatially located DHF case to the nearest road in each of the 5 road subsets was determined and then subjected to an ANOVA and t-test to determine levels of association between minor road networks (especially 3rd and 4th class roads) and DHF cases and found DHF cases were located away from forests, especially 5th class roads). The frequency of DHF cases to different road classes was: 0% (1st class roads), 7% (2nd class roads), 32% (3rd class roads), 57% (4th class roads) and 4% (5th class road). The data clearly demonstrated that both class 3 and class 4 roads account for 89% of nearby dengue cases. These results represent the first evidence of dengue cases being found restricted between forested areas and major highways and would be useful when planning and implementing control strategies for dengue and Aedes aegypti mosquitoes.
Dengue Fever Epidemiology and Control in the Caribbean: A Status Report (2012)rsmahabir
The epidemiology of Dengue fever in the English speaking Caribbean over the last two decades is reviewed. Dengue cases reported to the World Health Organization, Pan American Health Organization, Caribbean Epidemiology Centre and in recent published papers were collated and analysed to determine the incidence and geographical distribution among the various countries. Dengue fever was observed among most Caribbean countries with various intensities of transmission. During 2010 all four dengue serotypes were found co-circulating within the Caribbean islands with crude fatality rates of 6 in Barbados, 4 in Jamaica, 3 in the Bahamas and 2 in Dominica. Similar numbers of males and females from the 20-39 age group were found with DHF but the 10-19 age group shows a slight increase in disease levels. Overall more males were reported with DF/DHF than females. The results show significant (P<0.002) increases in the number of DF/DHF cases and in Ae. aegypti indices during the rainy season compared to the dry season. Little data is available on the density of the Aedes aegypti population in the Caribbean region, and most information comes from Jamaica and Trinidad and Tobago.
The Gibraltar COVID-19 Cohort: Determining the True Incidence and Severity Ra...asclepiuspdfs
COVID-19 is a new infectious disease with an unclear incidence and an unknown rate of progression to severe disease. The Gibraltar COVID-19 Cohort utilises two distinct cohorts - a clinical cohort and a random population based cohort -, to provide an accurate assessment of case severity rate. Design: Retrospective analysis of a SARS-CoV2 RT-PCR point prevalence study and a RT-PCR confirmed positive clinical case cohort to calculate case severity rates. Settings and Participants: Over a three day period nasopharyngeal swabs were sampled from a randomly selected 1.2% of the population of Gibraltar and then analysed via RT-PCR to determine the background incidence of COVID-19 infection. The results were then analysed and compared to the clinical case cohort. The rate of progression to severe COVID-19 disease in those with COVID-19 infection was then calculated.
Guidelines for Management of Outbreak in Healthcare Organizationdrnahla
Guidelines for Management of Outbreak in Healthcare Organization
Dr. NAHLA ABDEL KADERوMD, PhD.
INFECTION CONTROL CONSULTANT, MOH
INFECTION CONTROL CBAHI SURVEYOR
Infection Control Director, KKH.
Dynamics and Control of Infectious Diseases (2007) - Alexander Glaser Wouter de Heij
See also:
- https://food4innovations.blog/2020/03/26/montecarlo-simulaties-tonen-aan-wat-de-onzekerheid-is-en-dat-we-minimaal-1600-maar-misschien-wel-2000-2500-ic-plaatsen-nodig-hebben/
The Importance of Asymptomatic Coronavirus Disease-19 Patients: Never Trust a...asclepiuspdfs
The asymptomatic infectious case is a “silent client,” one of the most complex and damaging types of client: It is someone who does not provide information; of which we have no information. The silent client, as in the asymptomatic infection, can undermine the business by apparently not being able to address the problem. So how do you manage silent clients, asymptomatic cases? Identifying the points where asymptomatic (silent) cases occur and addressing the situation from a comprehensive perspective. This includes: (1) Preventing contagion and interrupting the transmission process immediately after contact with the virus: Test system, trace, and public health measures: Polymerase chain reaction testing on as many people as possible who have been in contact with infected people which allows the isolation of infected and the tracking and quarantine of their contacts; (2) universal public health measures: Wear a mask in public, wash your hands regularly, stay home when sick, keep a physical distance, and avoid meeting people outside of your home; (3) being so strict with negative cases as with positive ones: The consequences of high rates of false negatives are serious because they allow asymptomatic – and symptomatic – people to transmit diseases; follow-up is recommended, from a clinical point of view – epidemiological, as strict to negative cases as to positive ones; (4) trace back the contacts of the positive cases: search the source of a new case, together with the contacts of that person; and (5) massive and opportunistic tests for the detection of general and specific populations: Rapid response tests for coronavirus disease-19 available to everyone, especially those without symptoms, carried out as mass population screening, to certain groups such as health workers and students, as detection opportunistic in the general practitioner’s consultation, and even self-administered by anyone.
Impact of road networks on the distribution of dengue fever cases in Trinidad...rsmahabir
This study examined the impact of road networks on the distribution of dengue fever cases in Trinidad, West Indies. All confirmed cases of dengue hemorrhagic fever (DHF) observed during 1998 were georef- erenced and spatially located on a road map of Trinidad using Geographic Information Systems software. A new digital geographic layer representing these cases was created and the distances from these cases to the nearest classified road category (5 classifications based on a functional utility system) were examined. The distance from each spatially located DHF case to the nearest road in each of the 5 road subsets was determined and then subjected to an ANOVA and t-test to determine levels of association between minor road networks (especially 3rd and 4th class roads) and DHF cases and found DHF cases were located away from forests, especially 5th class roads). The frequency of DHF cases to different road classes was: 0% (1st class roads), 7% (2nd class roads), 32% (3rd class roads), 57% (4th class roads) and 4% (5th class road). The data clearly demonstrated that both class 3 and class 4 roads account for 89% of nearby dengue cases. These results represent the first evidence of dengue cases being found restricted between forested areas and major highways and would be useful when planning and implementing control strategies for dengue and Aedes aegypti mosquitoes.
Dengue Fever Epidemiology and Control in the Caribbean: A Status Report (2012)rsmahabir
The epidemiology of Dengue fever in the English speaking Caribbean over the last two decades is reviewed. Dengue cases reported to the World Health Organization, Pan American Health Organization, Caribbean Epidemiology Centre and in recent published papers were collated and analysed to determine the incidence and geographical distribution among the various countries. Dengue fever was observed among most Caribbean countries with various intensities of transmission. During 2010 all four dengue serotypes were found co-circulating within the Caribbean islands with crude fatality rates of 6 in Barbados, 4 in Jamaica, 3 in the Bahamas and 2 in Dominica. Similar numbers of males and females from the 20-39 age group were found with DHF but the 10-19 age group shows a slight increase in disease levels. Overall more males were reported with DF/DHF than females. The results show significant (P<0.002) increases in the number of DF/DHF cases and in Ae. aegypti indices during the rainy season compared to the dry season. Little data is available on the density of the Aedes aegypti population in the Caribbean region, and most information comes from Jamaica and Trinidad and Tobago.
Per contact probability of infection by Highly Pathogenic Avian InfluenzaHarm Kiezebrink
Estimates of the per-contact probability of transmission between farms of Highly Pathogenic Avian Influenza virus of H7N7 subtype during the 2003 epidemic in the Netherlands are important for the design of better control and biosecurity strategies.
We used standardized data collected during the epidemic and a model to extract data for untraced contacts based on the daily number of infectious farms within a given distance of a susceptible farm.
With these data, the ‘maximum likelihood estimation’ approach was used to estimate the transmission probabilities by the individual contact types, both traced and untraced.
The outcomes were validated against literature data on virus genetic sequences for outbreak farms. The findings highlight the need to
1) Understand the routes underlying the infections without traced contacts and
2) To review whether the contact-tracing protocol is exhaustive in relation to all the farm’s day-to-day activities and practices.
The SIR Model and the 2014 Ebola Virus Disease Outbreak in Guinea, Liberia an...CSCJournals
This research presents a mathematical model aimed at understanding the spread of the 2014 Ebola Virus Disease (EVD) using the standard SIR model. In modelling infectious disease dynamics, it is necessary to investigate whether the disease spread could attain an epidemic level or it could be wiped out. Data from the 2014 Ebola Virus Disease outbreak is used and Guinea where the outbreak started is considered in this study. A three dimensional non-linear differential equation is formulated and solved numerically using the Runge-Kutta 4th order method in the Vensim Personal Learning Edition Software. It is shown from the study that, with public health interventions, the effective reproductive number can be reduced making it possible for the outbreak to die out. It is also shown mathematically that the epidemic can only die out when there are no new infected individuals in the population.
Dengue Fever in Southern Florida 1
Change in Mosquito Ecology Leading to Increase in Dengue Fever in Southern Florida Comment by Zohir Chowdhury: Add the word climate change somewhere in the title since that’s the main focus of the paper
National University: Public Health
COH400: Environmental Health
February 21, 2021
Abstract Comment by Zohir Chowdhury: Refer to grading rubric. Multiple elements are missing that will lead to points deduction.
By influencing mosquito behavior, vector growth, and mosquito/human encounters, the environment affects the dengue ecosystem. Although these relationships are established, it is unknown what effect climate change would have on transmissions. Statistical and method temperature simulations have been used to improve our understanding of these interactions and forecast the impact of predicted climate change on dengue fever incidence, however, these simulations have yielded conflicting findings.
We identified critical environmental impacts on the dengue virus's ecology and assessed temperature dengue models' capacity to explain climate-dengue interactions, predict outbreaks, and forecast climate change consequences. We study the proof through lab experiments, field research, data analysis of correlations among proxies, dengue disease occurrence, and environmental conditions linked directly and indirectly to climate and dengue.
Health effects of dengue fever can range from a major drop in blood pressure leading to shock to internal bleeding and organ damage. In some cases, dengue can even lead to death. In pregnant women, dengue can be dangerous because it can be spread to the baby during childbirth. In the region of Southern Florida, most cases of dengue fever are brought in from individuals who have traveled to places such as the Caribbean, South America, or Asia. While traveling to areas where Dengue is widespread is the most common cause for seeing it here in the U.S., there have recently been 26 cases that were locally acquired.
Table of Contents
Background 4
Aedes Mosquitoes 5
Control of Aedes Mosquitoes 5
Geographical Location 6
Dengue Occurrence in Florida 7
Health Effects 8
Causes of Dengue Fever 9
Weather and Climate Variability 10
Clinical Diagnosis 12
Dengue Fever Symptoms 13
Dengue Fever Treatment 13
Clinical Management 14
Laboratory Diagnosis 15
Public Health Response 15
Conclusion 17
References 18
Tables 20
Table 1 20
Figures 21
Figure 1 21
Figure 2 22
Figure 3 23
Figure 4 24
Change in Mosquito Ecology Leading to Increase in Dengue Fever in Southern Florida Comment by Zohir Chowdhury: All over the paper, check for sentences that do not have a reference. You cannot JUST have a reference at the end of the paragraph, you need to reference “sentences” and then follow-up with transitional words that connect that reference to additional content from that same reference to build your paragraph. Of course, it’s never a good idea to ONLY have one reference in a single p ...
Sri Lanka faced an unpredicted outbreak of dengue fever. It is a tropical country with two monsoon seasons. With each monsoon brings in two peaks of dengue fever making it an endemic disease in Sri Lanka.
Spatial, temporal and genetic dynamics of H5N1 in chinaHarm Kiezebrink
The spatial spread of H5N1 avian influenza, significant ongoing mutations, and long-term persistence of the virus in some geographic regions has had an enormous impact on the poultry industry and presents a serious threat to human health.
This study revealed two different transmission modes of H5N1 viruses in China, and indicated a significant role of poultry in virus dissemination. Furthermore, selective pressure posed by vaccination was found in virus evolution in the country.
Phylogenetic analysis, geospatial techniques, and time series models were applied to investigate the spatiotemporal pattern of H5N1 outbreaks in China and the effect of vaccination on virus evolution.
Results showed obvious spatial and temporal clusters of H5N1 outbreaks on different scales, which may have been associated with poultry and wild-bird transmission modes of H5N1 viruses. Lead–lag relationships were found among poultry and wild-bird outbreaks and human cases. Human cases were preceded by poultry outbreaks, and wild-bird outbreaks were led by human cases.
Each clade has gained its own unique spatiotemporal and genetic dominance. Genetic diversity of the H5N1 virus decreased significantly between 1996 and 2011; presumably under strong selective pressure of vaccination. Mean evolutionary rates of H5N1 virus increased after vaccination was adopted in China.
Tweeting fever can twitter be used to Monitor the Incidence of Dengue-Like Il...Muhammad Habibi
Tweet sentiment analysis
Similar to Exploratory space-time analysis of dengue incidence in trinidad: a retrospective study using travel hubs as dispersal points, 1998–2004 (20)
A Critical Review of High and Very High-Resolution Remote Sensing Approaches ...rsmahabir
Slums are a global urban challenge, with less developed countries being particularly impacted. To adequately detect and map them, data is needed on their location, spatial extent and evolution. High- and very high-resolution remote sensing imagery has emerged as an important source of data in this regard. The purpose of this paper is to critically review studies that have used such data to detect and map slums. Our analysis shows that while such studies have been increasing over time, they tend to be concentrated to a few geographical areas and often focus on the use of a single approach (e.g., image texture and object-based image analysis), thus limiting generalizability to understand slums, their population, and evolution within the global context. We argue that to develop a more comprehensive framework that can be used to detect and map slums, other emerging sourcing of geospatial data should be considered (e.g., volunteer geographic information) in conjunction with growing trends and advancements in technology (e.g., geosensor networks). Through such data integration and analysis we can then create a benchmark for determining the most suitable methods for mapping slums in a given locality, thus fostering the creation of new approaches to address this challenge.
The Rabies Epidemic in Trinidad of 1923 to 1937: An Evaluation with a Geograp...rsmahabir
Background.—Rabies, although not preeminent among current infectious diseases, continues to afflict humans with as many as 55,000 deaths annually. The case fatality rate remains the highest among infectious diseases, and medical treatments have proven ineffective.
Objective.—This study analyzes the rabies epidemic of 1929 to 1937 in Trinidad from a geograph- ical perspective, using Geographic Information System (GIS) software as an analytical tool.
Setting.—A small island developing country at a time when infectious diseases were rampant.
Methods.—A review of the literature was undertaken, and data were collected on the occurrence of disease in both animal and humans populations and mapped using GIS software. Several factors identified in the literature were further explored such as land use/land cover, rainfall and magnetic declination.
Results.—The bat rabies epidemic of 1923 to 1937 in Trinidad was migratory and seasonal, shifting to new locations along a definite path. The pattern of spread appears to be spatially linked to land use/land cover. The epidemic continues to present many unexplained peculiarities.
Conclusion.—Despite the fact that this epidemic occurred almost 7 decades ago, the application of new tools available for public health use can create new knowledge and understanding of events. We showed that the spatial of distribution of the disease followed a distinct pathway possible due to the use of electromagnetic capabilities of bats.
The Role of Spatial Data Infrastructure in the Management of Land Degradation...rsmahabir
Abstract
Land degradation involves a wide array of natural and human induced factors affecting the productivity of land. These factors can exist in various non unique and complex combinations of different environmental settings, making detection and monitoring of land degradation an often difficult undertaking. As a result, no universal solution exists to eliminate the problem of land degradation altogether. In order to reduce its rate of encroachment, this phenomenon should be assessed and quantified in order to identify the causes, processes and factors leading to land degradation.
In small tropical and Caribbean islands, there exists a severe shortage of good, reliable and up- to-date information bases for the contributing factors of land degradation. In addition to the limited knowledge about what spatial datasets already exist, there is also no agreed minimum level of quality for datasets and metadata documentation standards. As a result, datasets produced to help in understanding and treating land degradation problems may have unknown or unacceptable levels of uncertainty. This may require re-development of already existing datasets, hence consuming further efforts, financial resources, and time. In critical circumstances where land degradation posses severe threat to the environment and therefore indirectly to humans, the incurred price of a slow or ill informed decision may eventually render the state of land unrecoverable.
It is postulated that Spatial Data Infrastructure (SDI) would present the opportunity for much more strategic and cooperative management of land degradation datasets in Small Tropical Caribbean Islands. It is therefore expected to be a vital tool in the treatment of land degradation, and also to assist in creating a network of critical resources to drive further research in the area. This paper reviews the challenges faced by Small Tropical Caribbean Islands when managing land degradation, with special emphasis on Trinidad, and discusses how SDI can be used to better facilitate land degradation management in these areas.
Advancing the Use of Earth Observation Systems for the Assessment of Sustaina...rsmahabir
Abstract: Decisions made on the use of land in Trinidad and Tobago, with little considerations to environmental impact or physical constraints, have resulted in physical, socio-economic, and environmental problems. As a result of the country’s economic progress, urbanisation and development are fragmenting natural areas and reducing the viability of the environment to support the population. Spatial information is a crucial component in the characterisation and examination of the spatio-temporal dynamics and the consequences of the interaction between human and the environment. This information is of critical importance in the development of models to predict future trends in land cover change and therein, best land use practices to be implemented. However, the lack of data at appropriate scales has made it difficult to accurately examine the land use/cover patterns in the country. This paper argues that the gap in data and information can be managed through the adoption of earth observation technology. Moreover, it reports on the developed methodology, and highlights key results of examining the use of geo-spatial images in addressing sustainability issues associated with development. The developed methodology involves several critical steps in using multi-spectral imagery including cloud and cloud shadow removal, image classification and image fusion. Additionally, a method for improving classification performance using high resolution imagery is discussed. The results demonstrated the accuracy, flexibility and cost-effectiveness of these technologies for mapping the land cover and producing other environmental measures and indicators. Further, these results confirmed the effectiveness of this technology in establishing the necessary baseline and support information for sustainable development in the Caribbean region.
APPLICATIONS OF REMOTE SENSING AND GIS TECHNOLOGIES IN FLOOD RISK MANAGEMENTrsmahabir
Flooding is the most common of all major disasters that regularly affect populations and results in extensive damage to property, infrastructure, natural resources, and even to loss of life. To ensure better outcomes, planning and execution of flood management projects must utilize knowledge on a wide range of factors, most of which are of a spatial nature. Advances in geospatial technologies, specifically remote sensing and Geographic Information Systems (GIS), have enabled the acquisition and analysis of data about the Earth's surface for flood mitigation projects in a faster, more efficient and more accurate manner.
Remote sensing and GIS have emerged as powerful tools to deal with various aspects of flood management in prevention, preparedness and relief management of flood disaster. GIS facilitates integration of spatial and non-spatial data such as rainfall and stream flows, river cross sections and profiles, and river basin characteristics, as well as other information such as historical flood maps, infrastructures, land use, and social and economic data. Such data sets are critical for the in-depth analysis and management of floods.
Remote sensing technologies have great potential in overcoming the information void in the Caribbean region. The observation, mapping, and representation of Earth’s surface have provided effective and timely information for monitoring floods and their effect. The potential of new air- and space-borne imaging technologies for improving hazard evaluation and risk reduction is continually being explored. They are relatively inexpensive and have the ability to provide information on several parameters that are crucial to flood mapping and monitoring.
Healthy Food Accessibility and Obesity: Case Study of Pennsylvania, USArsmahabir
Abstract-Obesity is a continuing challenge for any town, city or country faced with this problem. Being obese increases your risk of physical disorders such as high blood pressure (BP), high blood cholesterol, diabetes, coronary heart disease, stroke, cancer and poor reproductive health. Higher obesity rates also leads to increased economic burden on society. In order to better understand and control obesity rates the in uence of various factors on its prevalence should be investigated. We used Ordinary Least Squares (OLS) and Geographically Weighted Regression (GWR) models to analyze spatial relationships using a combination of socio-economic and physical factor for counties in Pennsylvania (PA), USA for 2010. Our ndings suggest that the rate of obesity is impacted by local spatial variation and its prevalence positively correlated with diabetes, physical inactivity and the distance that a person must travel to get to a healthy food store. Additionally, GWR (AICc = 261.59; r-squared = 0.45) was found to signi cantly improve model tting over OLS (AICc = 299.87; r-squared = 0.34). These results indicate that additional factors, including social, cultural and behavioral, are needed to better explain the distribution of obesity rates across PA.
Remote sensing-derived national land cover land use maps: a comparison for Ma...rsmahabir
Reliable land cover land use (LCLU) information, and change over time, is impor- tant for Green House Gas (GHG) reporting for climate change documentation. Four different organizations have independently created LCLU maps from 2010 satellite imagery for Malawi for GHG reporting. This analysis compares the procedures and results for those four activities. Four different classification methods were employed; traditional visual interpretation, segmentation and visual labelling, digital clustering with visual identification and supervised signature extraction with application of a decision rule followed by analyst editing. One effort did not report classification accuracy and the other three had very similar and excellent overall thematic accura- cies ranging from 85 to 89%. However, despite these high thematic accuracies there were very significant differences in results. National percentages for forest ranged from 18.2 to 28.7% and cropland from 40.5 to 53.7%. These significant differences are concerns for both remote-sensing scientists and decision-makers in Malawi.
Comparison and integration of spaceborne optical and radar data for mapping i...rsmahabir
The purpose of this study was to determine how different procedures and data, such as multiple wavelengths of radar imagery and radar texture measures, independently and in combination with optical imagery influence land-cover/use classification accuracies for a study site in Sudan. Radarsat-2 C-band and phased array L-band synthetic aperture radar (PALSAR) L-band quad-polarized radar were registered with ASTER (Advanced Spaceborne Thermal Emission and Reflection Radiometer) optical data. Spectral signatures were obtained for multiple landscape features, classified using a maximum-likelihood decision rule, and thematic accuracies were obtained using sepa- rate validation data. There were surprising differences between the thematic accuracies of the two radar data sets, with Radarsat-2 only having a 51% accuracy and PALSAR 73%. In contrast, the optical ASTER overall accuracy was 81%. Combining the original radar and a variance texture measure increased the Radarsat-2 to 78% and PALSAR to 80%, whereas the two original radar bands together had an accuracy of 87%. Sensor fusion of optical and radar obtained an accuracy of 93%. Based on these results, the use of multiwavelength quad-polarized radar imagery combined or inte- grated with optical imagery has great potential in improving the accuracy of land- cover/use classifications. In tropical and high-latitude regions of the world, where persistent cloud cover hinders the use of optical satellite systems, land management programmes may find this research promising.
Radar and optical remote sensing data evaluation and fusion; a case study for...rsmahabir
The recent increase in the availability of spaceborne radar in different wavelengths with multiple polarisations provides new opportunities for land surface analysis. This research effort explored how different radar data, and derived texture values, indepen- dently and in combination with optical imagery influence land cover/use classification accuracies for a study site in Washington, DC, USA. Two spaceborne radar images, Radarsat-2L-band and Palsar C-band quad-polarised radar, were registered with Aster optical data for this study. Traditional methods of classification were applied to various components and combinations of this data set, and overall and class-specific thematic accuracies obtained for comparison. The results for the two despeckled radar data sets were quite different, with Radarsat-2 obtaining an overall accuracy of 59% and Palsar 77%, while that of the optical Aster was 90%. Combining the original radar and a variance texture measure increased the accuracy of Radarsat-2 to 71% but that of Palsar only to 78%. One of the sensor fusions of optical and radar obtained an accuracy of 93%. For this location, radar by itself does not obtain classification accuracies as high as optical data, but fusion with optical imagery provides better overall thematic accuracy than the optical independently, and results in some useful improvements on a class-by-class basis. For those regions with high cloud cover, quad polarisation radar can independently provide viable results but it may be wavelength-dependent.
VDIS: A System for Morphological Detection and Identification of Vehicles in ...rsmahabir
With the growth of urban centers worldwide, the number of vehicles in and around these areas has also increased. Traffic-related data plays an important role in spatial planning, for example, optimizing road networks and in the estimation or simulation of air and noise pollution. This information is important as it reflects the changes taking place around us. Additionally, data collected can be used for a wide array of applications including law enforcement, fleet management, and supporting other analyses at varying scales. In this paper, we present a method for the detection and identification of vehicles from low altitude, high spatial resolution Red Blue Green (RGB) images, utilizing both object spectra and image morphology. Results show an identification performance upwards of 62% with false positives occurring from the use of images with sun glare and vehicles with similar spectra values.
Climate Change and Forest Management: Adaptation of Geospatial Technologiesrsmahabir
eraction with the environment, has led to increased concerns about the impact of such disruption on major areas of sustainable development. This has resulted in various innovations in technology, policy and forged alliances at regional and international scales in an effort to reduce humans’ impact on climate. Forests provide a suitable option for reducing the net amount of carbon dioxide in the atmosphere by acting as carbon sinks, thereby forming one part of a more complete solution for combating climate change. At the same time, forests are also sensitive to changes in climate, making sustainable forest management a critical component of present and future climate change strategies. This paper examines the contribution of geospatial technologies in supporting sustainable forest management, emphasizing its use in the classification of forests, estimation of their structure, detecting change and modeling of carbon stocks.
Black holes no more the emergence of volunteer geographic informationrsmahabir
More than one billion people currently live in slums, which are growing at unprecedented rates leading to the rise of vulnerable communities. Slums are usually viewed as areas of extreme poverty and neglect and further, their development as an impediment to progress. Although slums exist in all areas of the world, their presence is most noticeable in the less developed countries of the global south. These countries are among the poorest worldwide as suggested by the Human Development Index and the substantial disbursement of and dependence on international aid. With the added burden of having to absorb the majority of projected population growth, further challenges can be expected at these locations if the situation of slum dwellers does not improve.
An evaluation of Radarsat-2 individual and combined image dates for land use/...rsmahabir
Various land use/cover types exhibit seasonal characteristics which can be captured in remotely sensed imagery. This study examined how different seasons of Radarsat-2 data influence land use/cover classification accuracies for two study sites. Two dates of Radarsat-2 C-band quad-polarized images were obtained for Washington, D.C., USA and Wad Madani, Sudan. Spectral signatures were extracted and used with a maximum likelihood decision rule for classification and thematic accuracies were then determined. Both despeckled radar and derived texture measures were examined. Thematic accuracies for the two despeckled image dates were similar with a difference of 3% for Washington and 6% for Sudan. Merging the despeckled images for both seasons increased overall accuracy by 2% for Washington and 9% for Sudan. Further combining the original radar for both seasons with derived texture measures increased overall accuracies by 9% for Washington and 16% for Sudan for final overall accuracy values of 73% and 82%.
Radar speckle reduction and derived texture measures for land cover/use class...rsmahabir
This study examined the appropriateness of radar speckle reduction for deriving texture measures for land cover/use classifications. Radarsat-2 C-band quad-polarized data were obtained for Washington, D.C., USA. Polarization signatures were extracted for multiple image components, classified with a maximum-likelihood decision rule and thematic accuracies determined. Initial classifications using original and despeckled scenes showed despeckled radar to have better overall thematic accuracies. However, when variance texture measures were extracted for several window sizes from the original and despeckled imagery and classified, the accuracy for the radar data was decreased when despeckled prior to texture extraction. The highest classification accuracy obtained for the extracted variance texture measure from the original radar was 72%, which was reduced to 69% when this measure was extracted from a 5x5 despeckled image. These results suggest that it may be better to use despeckled radar as original data and extract texture measures from the original imagery.
Coral Reefs: Challenges, Opportunities and Evolutionary Strategies for Surviv...rsmahabir
Coral reefs are one of the most diverse marine ecosystems on Earth. They are renowned hotspots of species biodiversity and provide home to a large array of marine plants and animals. Over the past 100 years, many tropical regions’ sea surface temperatures have increased by almost 1 °C and are currently increasing at about 1–2 °C per century. Corals have very specific thermal thresholds beyond which their temperature sensitive symbiont Zooxanthellae becomes affected and causes corals to bleach. Mass bleaching has already caused significant losses to live coral in many parts of the world. In the Caribbean, the problem of coral bleaching has especially been problematic, with as much as 90% bleaching in some parts of the Caribbean due to thermal anomalies in some instances. This paper looks at the key role that temperature plays in the health and spatial distribution of coral in the Caribbean. The relationship between coral and symbiont is examined along with some evolutionary strategies necessary to ensure the future survival of coral with the changing climate.
Authoritative and Volunteered Geographical Information in a Developing Countr...rsmahabir
Abstract: With volunteered geographic information (VGI) platforms such as OpenStreetMap (OSM) becoming increasingly popular, we are faced with the challenge of assessing the quality of their content, in order to better understand its place relative to the authoritative content of more traditional sources. Until now, studies have focused primarily on developed countries, showing that VGI content can match or even surpass the quality of authoritative sources, with very few studies in developing countries. In this paper, we compare the quality of authoritative (data from the Regional Center for Mapping of Resources for Development (RCMRD)) and non-authoritative (data from OSM and Google’s Map Maker) road data in conjunction with population data in and around Nairobi, Kenya. Results show variability in coverage between all of these datasets. RCMRD provided the most complete, albeit less current, coverage when taking into account the entire study area, while OSM and Map Maker showed a degradation of coverage as one moves from central Nairobi towards rural areas. Furthermore, OSM had higher content density in large slums, surpassing the authoritative datasets at these locations, while Map Maker showed better coverage in rural housing areas. These results suggest a greater need for a more inclusive approach using VGI to supplement gaps in authoritative data in developing nations.
Separability Analysis of Integrated Spaceborne Radar and Optical Data: Sudan ...rsmahabir
Abstract-The purpose of this study was to determine via spectral separability using divergence measures the best individual and combinations of various numbers of bands for five land cover/ land use classes along the Blue Nile in Sudan. The data for this analysis were a stack of 15 layers including RADARSAT-2 C-band and PALSAR L-band quad-polarized radar registered with ASTER optical data, as well as four variance texture measures extracted from the RADARSAT-2 images. Spectral signatures were obtained for each class and examined by various separability measures. This examination is useful for better understanding the relative value of different types of remote sensing data and best band combinations for possible visual analysis and for improving land cover/ land use classification accuracy. Results show that the best single band for analysis was the RADARSAT-2 VH variance texture measure. The best pair of bands was the ASTER visible red and the RADARSAT-2 HV variance texture, which also included the PALSAR VH band for the best three band combination, all bands being very different data types. Further, based upon the divergence values, only eight bands are needed to achieve maximum separation between land cover/ land use classes. Beyond this point, classification accuracy is expected to decrease, with as few as six bands needed to reach viable classification accuracy.
Relative value of radar and optical data for land cover/use mapping: Peru exa...rsmahabir
This study determined using divergence measures the best indivi- dual and combinations of various numbers of bands for six land cover/use classes around the city of Arequipa, Peru. A 15 band data stack consisting of PALSAR L-band dual-polarised radar, Landsat optical data, as well as six variance texture measures extracted from the PALSAR images, was used in this study. Spectral signatures were obtained for each class for the diver- gence examination. The band having the highest separability was the Landsat visible red band followed by the two largest window PALSAR texture measures. The best three band combina- tion included three very different data types, Landsat visible red, near infrared and the PALSAR HH variance texture from a 17 × 17 pixel window. There was no need based upon the diver- gence values to use more than five bands for classification.
Nucleophilic Addition of carbonyl compounds.pptxSSR02
Nucleophilic addition is the most important reaction of carbonyls. Not just aldehydes and ketones, but also carboxylic acid derivatives in general.
Carbonyls undergo addition reactions with a large range of nucleophiles.
Comparing the relative basicity of the nucleophile and the product is extremely helpful in determining how reversible the addition reaction is. Reactions with Grignards and hydrides are irreversible. Reactions with weak bases like halides and carboxylates generally don’t happen.
Electronic effects (inductive effects, electron donation) have a large impact on reactivity.
Large groups adjacent to the carbonyl will slow the rate of reaction.
Neutral nucleophiles can also add to carbonyls, although their additions are generally slower and more reversible. Acid catalysis is sometimes employed to increase the rate of addition.
Phenomics assisted breeding in crop improvementIshaGoswami9
As the population is increasing and will reach about 9 billion upto 2050. Also due to climate change, it is difficult to meet the food requirement of such a large population. Facing the challenges presented by resource shortages, climate
change, and increasing global population, crop yield and quality need to be improved in a sustainable way over the coming decades. Genetic improvement by breeding is the best way to increase crop productivity. With the rapid progression of functional
genomics, an increasing number of crop genomes have been sequenced and dozens of genes influencing key agronomic traits have been identified. However, current genome sequence information has not been adequately exploited for understanding
the complex characteristics of multiple gene, owing to a lack of crop phenotypic data. Efficient, automatic, and accurate technologies and platforms that can capture phenotypic data that can
be linked to genomics information for crop improvement at all growth stages have become as important as genotyping. Thus,
high-throughput phenotyping has become the major bottleneck restricting crop breeding. Plant phenomics has been defined as the high-throughput, accurate acquisition and analysis of multi-dimensional phenotypes
during crop growing stages at the organism level, including the cell, tissue, organ, individual plant, plot, and field levels. With the rapid development of novel sensors, imaging technology,
and analysis methods, numerous infrastructure platforms have been developed for phenotyping.
Remote Sensing and Computational, Evolutionary, Supercomputing, and Intellige...University of Maribor
Slides from talk:
Aleš Zamuda: Remote Sensing and Computational, Evolutionary, Supercomputing, and Intelligent Systems.
11th International Conference on Electrical, Electronics and Computer Engineering (IcETRAN), Niš, 3-6 June 2024
Inter-Society Networking Panel GRSS/MTT-S/CIS Panel Session: Promoting Connection and Cooperation
https://www.etran.rs/2024/en/home-english/
BREEDING METHODS FOR DISEASE RESISTANCE.pptxRASHMI M G
Plant breeding for disease resistance is a strategy to reduce crop losses caused by disease. Plants have an innate immune system that allows them to recognize pathogens and provide resistance. However, breeding for long-lasting resistance often involves combining multiple resistance genes
The ability to recreate computational results with minimal effort and actionable metrics provides a solid foundation for scientific research and software development. When people can replicate an analysis at the touch of a button using open-source software, open data, and methods to assess and compare proposals, it significantly eases verification of results, engagement with a diverse range of contributors, and progress. However, we have yet to fully achieve this; there are still many sociotechnical frictions.
Inspired by David Donoho's vision, this talk aims to revisit the three crucial pillars of frictionless reproducibility (data sharing, code sharing, and competitive challenges) with the perspective of deep software variability.
Our observation is that multiple layers — hardware, operating systems, third-party libraries, software versions, input data, compile-time options, and parameters — are subject to variability that exacerbates frictions but is also essential for achieving robust, generalizable results and fostering innovation. I will first review the literature, providing evidence of how the complex variability interactions across these layers affect qualitative and quantitative software properties, thereby complicating the reproduction and replication of scientific studies in various fields.
I will then present some software engineering and AI techniques that can support the strategic exploration of variability spaces. These include the use of abstractions and models (e.g., feature models), sampling strategies (e.g., uniform, random), cost-effective measurements (e.g., incremental build of software configurations), and dimensionality reduction methods (e.g., transfer learning, feature selection, software debloating).
I will finally argue that deep variability is both the problem and solution of frictionless reproducibility, calling the software science community to develop new methods and tools to manage variability and foster reproducibility in software systems.
Exposé invité Journées Nationales du GDR GPL 2024
Deep Behavioral Phenotyping in Systems Neuroscience for Functional Atlasing a...Ana Luísa Pinho
Functional Magnetic Resonance Imaging (fMRI) provides means to characterize brain activations in response to behavior. However, cognitive neuroscience has been limited to group-level effects referring to the performance of specific tasks. To obtain the functional profile of elementary cognitive mechanisms, the combination of brain responses to many tasks is required. Yet, to date, both structural atlases and parcellation-based activations do not fully account for cognitive function and still present several limitations. Further, they do not adapt overall to individual characteristics. In this talk, I will give an account of deep-behavioral phenotyping strategies, namely data-driven methods in large task-fMRI datasets, to optimize functional brain-data collection and improve inference of effects-of-interest related to mental processes. Key to this approach is the employment of fast multi-functional paradigms rich on features that can be well parametrized and, consequently, facilitate the creation of psycho-physiological constructs to be modelled with imaging data. Particular emphasis will be given to music stimuli when studying high-order cognitive mechanisms, due to their ecological nature and quality to enable complex behavior compounded by discrete entities. I will also discuss how deep-behavioral phenotyping and individualized models applied to neuroimaging data can better account for the subject-specific organization of domain-general cognitive systems in the human brain. Finally, the accumulation of functional brain signatures brings the possibility to clarify relationships among tasks and create a univocal link between brain systems and mental functions through: (1) the development of ontologies proposing an organization of cognitive processes; and (2) brain-network taxonomies describing functional specialization. To this end, tools to improve commensurability in cognitive science are necessary, such as public repositories, ontology-based platforms and automated meta-analysis tools. I will thus discuss some brain-atlasing resources currently under development, and their applicability in cognitive as well as clinical neuroscience.
Observation of Io’s Resurfacing via Plume Deposition Using Ground-based Adapt...Sérgio Sacani
Since volcanic activity was first discovered on Io from Voyager images in 1979, changes
on Io’s surface have been monitored from both spacecraft and ground-based telescopes.
Here, we present the highest spatial resolution images of Io ever obtained from a groundbased telescope. These images, acquired by the SHARK-VIS instrument on the Large
Binocular Telescope, show evidence of a major resurfacing event on Io’s trailing hemisphere. When compared to the most recent spacecraft images, the SHARK-VIS images
show that a plume deposit from a powerful eruption at Pillan Patera has covered part
of the long-lived Pele plume deposit. Although this type of resurfacing event may be common on Io, few have been detected due to the rarity of spacecraft visits and the previously low spatial resolution available from Earth-based telescopes. The SHARK-VIS instrument ushers in a new era of high resolution imaging of Io’s surface using adaptive
optics at visible wavelengths.
Travis Hills' Endeavors in Minnesota: Fostering Environmental and Economic Pr...Travis Hills MN
Travis Hills of Minnesota developed a method to convert waste into high-value dry fertilizer, significantly enriching soil quality. By providing farmers with a valuable resource derived from waste, Travis Hills helps enhance farm profitability while promoting environmental stewardship. Travis Hills' sustainable practices lead to cost savings and increased revenue for farmers by improving resource efficiency and reducing waste.
The use of Nauplii and metanauplii artemia in aquaculture (brine shrimp).pptxMAGOTI ERNEST
Although Artemia has been known to man for centuries, its use as a food for the culture of larval organisms apparently began only in the 1930s, when several investigators found that it made an excellent food for newly hatched fish larvae (Litvinenko et al., 2023). As aquaculture developed in the 1960s and ‘70s, the use of Artemia also became more widespread, due both to its convenience and to its nutritional value for larval organisms (Arenas-Pardo et al., 2024). The fact that Artemia dormant cysts can be stored for long periods in cans, and then used as an off-the-shelf food requiring only 24 h of incubation makes them the most convenient, least labor-intensive, live food available for aquaculture (Sorgeloos & Roubach, 2021). The nutritional value of Artemia, especially for marine organisms, is not constant, but varies both geographically and temporally. During the last decade, however, both the causes of Artemia nutritional variability and methods to improve poorquality Artemia have been identified (Loufi et al., 2024).
Brine shrimp (Artemia spp.) are used in marine aquaculture worldwide. Annually, more than 2,000 metric tons of dry cysts are used for cultivation of fish, crustacean, and shellfish larva. Brine shrimp are important to aquaculture because newly hatched brine shrimp nauplii (larvae) provide a food source for many fish fry (Mozanzadeh et al., 2021). Culture and harvesting of brine shrimp eggs represents another aspect of the aquaculture industry. Nauplii and metanauplii of Artemia, commonly known as brine shrimp, play a crucial role in aquaculture due to their nutritional value and suitability as live feed for many aquatic species, particularly in larval stages (Sorgeloos & Roubach, 2021).
Exploratory space-time analysis of dengue incidence in trinidad: a retrospective study using travel hubs as dispersal points, 1998–2004
1. Exploratory space-time analysis of dengue incidence
in trinidad: a retrospective study using travel hubs
as dispersal points, 1998–2004
Karmesh D Sharma1
Email: KSharma@yahoo.com
Ron S Mahabir2
Email: rsmahabir@gmail.com
Kevin M Curtin2
Email: curtin@gmu.edu
Joan M Sutherland3
Email: joanmsutherland@gmail.com
John B Agard3
Email: john.agard@sta.uwi.edu
Dave D Chadee3*
*
Corresponding author
Email: Chadee@tstt.net.tt
1
Ministry of Health, 63 Park Street, Port of Spain, Trinidad, West Indies
2
Department of Geography and Geoinformation Science, George Mason
University, Fairfax, Virginia, USA
3
Department of Life Sciences, The University of the West Indies, St. Augustine,
Trinidad, West Indies
Abstract
Background
Dengue is an acute arboviral disease responsible for most of the illness and death in tropical
and subtropical regions. Over the last 25 years there has been increase epidemic activity of
the disease in the Caribbean, with the co-circulation of multiple serotypes. An understanding
of the space and time dynamics of dengue could provide health agencies with important clues
for reducing its impact.
Methods
Dengue Haemorrhagic Fever (DHF) cases observed for the period 1998–2004 were
georeferenced using Geographic Information System software. Spatial clustering was
calculated for individual years and for the entire study period using the Nearest Neighbor
Index. Space and time interaction between DHF cases was determined using the Knox Test
2. while the Nearest Neighbor Hierarchical method was used to extract DHF hot spots. All
space and time distances calculated were validated using the Pearson r significance test.
Results
Results shows that (1) a decrease in mean distance between DHF cases correlates with
activity leading up to an outbreak, (2) a decrease in temporal distance between DHF cases
leads to increased geographic spread of the disease, with an outbreak occurrence about every
2 years, and (3) a general pattern in the movement of dengue incidents from more rural to
urban settings leading up to an outbreak with hotspot areas associated with transportation
hubs in Trinidad.
Conclusion
Considering only the spatial dimension of the disease, results suggest that DHF cases become
more concentrated leading up to an outbreak. However, with the additional consideration of
time, results suggest that when an outbreak occurs incidents occur more rapidly in time
leading to a parallel increase in the rate of distribution of the disease across space. The results
of this study can be used by public health officers to help visualize and understand the spatial
and temporal patterns of dengue, and to prepare warnings for the public. Dengue space-time
patterns and hotspot detection will provide useful information to support public health
officers in their efforts to control and predict dengue spread over critical hotspots allowing
better allocation of resources.
Keywords
Dengue, Space-time analysis, Travel hubs, Hot spots, Dengue epidemiology, Cluster analysis,
Control programs, Trinidad
Author summary
The increased geographic spread and intensity of dengue is due to numerous factors
including, increased urbanization, human migrations and air travel, flooding and global
warming. In the Caribbean, outbreaks continue to occur with hyperendemic occurrence of the
disease. This is mainly due to the use of reactive programs and limited resources available to
control the disease. Using the island of Trinidad as a case study, we show that higher rates of
infection occur in areas with a history of dengue incidence. Also, a general pattern in the
movement of dengue cases is found leading up to and transitioning away from an epidemic
occurrence, and associated with the locations of transportation hubs. These findings can be
used to contain the disease in a more efficient and effective manner. Also, few studies have
examined the space and time relationship of dengue incidents at local scales in the Caribbean
islands. Other islands can adopt the approach used to better allocate resources and understand
the disease. This information can then be used to gain regional perspective and understanding
about the spatio-temporal persistence of dengue in the Caribbean.
3. Background
The concept that human movement enhances the spatial distribution of dengue fever is not
new and has been demonstrated along busy routes of human traffic in Asia [1-3] and more
recently in the Americas [4,5]. In fact wherever people congregate in dengue infested
countries whether at home, in church with friends and at relatives and festivals, the likelihood
of man-vector-virus contact increases thereby enhancing disease transmission [6]. Studies
conducted by Chao et al. [7] modeled the role human movement played in the spatial spread
of dengue and suggested that dengue cases which clustered in space and time were probably
due to the short flight range of the Ae. aegypti mosquito [8]. This clustering of cases and the
concept of “casa segura” demonstrate the role human movement plays in dengue spatial
transmission [1-3,9,10]. Similar studies have been recently conducted in India [11], Peru
[12], Cambodia [10] and Puerto Rico [4].
Dengue is an acute tropical viral disease caused by one of four serotypes, Dengue-1, Dengue-
2, Dengue- 3, and Dengue-4 (DEN-1, DEN-2, DEN-3, and DEN-4) transmitted by Aedes
mosquitoes; Aedes aegypti (L.) and Aedes albopictus (Skuse) [13]. Of the two species of
Aedes mosquitoes, Ae. aegypti has been identified as the principal vector for much of the
morbidity and mortality associated with dengue [14]. Adult female Ae. aegypti acquire the
virus by biting an infected person during the viremic phase, which usually lasts for four to
five days, but may last up to 12 days [15]. The virus is then transmitted to non-infected
persons via bites from infected mosquitoes. Clinical symptoms of infected persons vary from
a mild, self-limited fever, which can be undiagnosed or misdiagnosed, to severe illness with
acute hemorrhagic manifestations such as Dengue Hemorrhagic Fever (DHF) or Dengue
Shock Syndrome (DSS) [16,17]. These severe forms of the disease are associated with
several factors, including the immunity status of hosts, disease strain [18], age and genetic
predisposition [19].
Over the last 25 years the overall incidence of dengue in developing regions of the world,
including the Caribbean region [20,21] has increased with circa 40% of the world’s
population at risk of infection with dengue [7]. It is now considered the most frequent
arboviral disease in the world, with an estimated annual 390 million cases of dengue fever
(DF), 250,000 cases of DHF, 25,000 deaths per year and 93 million asymptomatic cases
[7,22]. Within Latin America and the Caribbean region, over 908,926 cases of DF and DHF
have been reported up to 2008 [22]. In Trinidad, dengue outbreaks continue to occur despite
conventional vector control efforts with the situation made worst by the absence of suitable
vaccines for the disease.
An important issue in monitoring communicable diseases and planning intervention is to
understand the spatial and temporal patterns of disease. This information can provide clues to
understanding the dynamics of disease spread, especially the detection of spatial and space-
time clustering of cases and identifying high risk areas and times, where disease surveillance
and control should be targeted. In this study several methods are used for spatial and temporal
analysis of DHF cases in Trinidad for the period 1998–2004. The Nearest Neighbor Index
(NNI) and the Nearest Neighbor Hierarchical Clustering (NNHC) methods have been widely
used in exploring first and second order spatial point processes [23]. The NNI is used to
detect the presence of spatial clustering while NNHC is used to map the extent of the spatial
clustering if present. Recent studies have demonstrated the utility of the NNI for detecting the
presence of spatial clustering in dengue cases [24,25] while the NNHC was used to identify
high mortality concentrations of yellow fever for each month in 1878 representing an
4. epidemic year of the disease in New Orleans [26]. The NNHC clustering is particularly
applicable if the nearest neighbor distance is believed to be of relevance to the spatial and
temporal distribution of point features [27]. Work conducted in the County of St Patrick,
Trinidad showed dengue cases closely clustered together and suggested that this clustering
was possibly due to the short flight range of Ae. aegypti [28], thus making NNI and NNHC
suitable methodologies for the current study. The present study was conducted to investigate
the impact of different road networks on the spatio-temporal distribution of dengue fever
cases associated with the locations of transportation hubs in Trinidad, West Indies.
Methods
Digital datasets
All digital datasets collected or created were represented as thematic layers and converted to
a common geographic coordinate system, UTM Zone 20 N with an earth model of WGS
1984 to support uniform analysis of the data. Resulting datasets were then analyzed using
Geographic Information System (GIS) software. Geographic datasets used in this study were
collected from the Department of Geomatics Engineering and Land Management, University
of the West Indies, St. Augustine, Trinidad.
Case data
A definition of a confirmed DHF case was provided by the Ministry of Health, Trinidad and
Tobago. This definition was framed as persons (child or adult) having the symptoms:
temperature of 38 °C or higher for 5 days, accompanied by headache, myalgia, and other non-
specific clinical presentations [29]. These persons were closely monitored for signs of
haemorrhage. All suspected cases of DHF were laboratory confirmed by virus isolation,
detection of specific IgM antibody and/or seroconversion [29]. Records representing
confirmed DHF cases for 1998–2004 were collected from the Ministry of Health. These
contained street addresses of persons confirmed to be infected by the disease. The years
1998–2004 were specifically chosen since they represent data which could be obtained for
Trinidad, along with presenting an opportunity to examine the transition between two dengue
epidemic years (1998 and 2002) on the island. This study was approved by the Ethics
Committee of the South West Regional Health Authority, Ministry of Health, San Fernando,
Trinidad, West Indies.
Address geocoding and spatial distribution
A GIS is a tool that incorporates geographical features with tabular data in order to map,
analyze, and assess real-world problems. It has been used extensively to study diseases,
relating spatial patterns to geographic variations in health risks [25]. The names of all dengue
cases were deleted and each subject given a unique identifier number before data entry was
conducted to safeguard the identity of patients. However, a master sheet was kept in a secure
location with access available only to the Principal investigator. In this study, the street
addresses of confirmed DHF cases were located on a GIS road layer of Trinidad.
Successfully located cases were then plotted as point features; creating a new GIS layer
representing point locations of DHF cases in Trinidad. Due to insufficient information, not all
cases could be geocoded e.g. exact addresses were missing as well as other demographic
information. These cases were excluded from our analysis.
5. Cluster analysis
Spatial clustering
Being an island, Trinidad imposes a natural boundary on both human and mosquito
populations. Trinidad is roughly rectangular in shape with most people living in areas along
the coastline. We therefore used a rectangular bounding box around the observations as the
area to be used in calculations of clustering. Although one could argue that there are some
internal uninhabited areas that could be removed from the analysis, doing so would only
serve to strengthen the level of clustering described below.
Spatial clustering was determined using the Nearest Neighbor Index [30,31]. This was done
for each year followed by an application for all years. The NNI measures the degree of spatial
dispersion in the distribution based on the minimum of the inter-feature distances. It
compares the distances between nearest points (Nearest Neighbor Distance) and distances
that would be expected on the basis of chance (Random Distance) as shown in eq.1.
NND
NNI
RD
= (1)
where NNI is the nearest neighbor index, NND is the mean nearest neighbor distance and RD
is the random distance. As explained in [31], NND is calculated by first calculating the
distance between each feature and every other feature. The minimum distance (representing
the distance to the closest feature) for all features is then averaged by dividing by the total
number of features as shown in eq.2.
1
( )
[ ]
N
ij
i
Min d
NND
N=
= ∑ (2)
where Min(dij) is the distance between each feature and its nearest neighbor and N is the
number of features in the distribution. The calculation of RD is shown in eq. 3 and its
numerical proof presented in [31].
1
2
MD
ρ
= (3)
where ρ represents the density of the observed distribution calculated as the total number of
features divided by the area of the region containing the features. Also proposed by [31] is a
Z-test to indicate whether the observed mean nearest neighbor distance was significantly
different from the random distance as shown in eq. 4.
NND
NND RD
Z
SE
−
= (4)
where SENND is the standard error of the mean nearest neighbor distance and is calculated as
shown in eq.5 and its numerical proof presented in [31].
6. 0.26136
NNDSE
Nρ
= (5)
where N represents the total number of features and ρ is the density. A Z-value indicating
95% confidence (values between −2.58 and 2.58 standard deviations) was used as a measure
of significance for each calculated NNI that indicates clustering of features in 2D space.
Calculations were done for each year and across all years respectively.
To map the extent of clustering, identifying hotspots of dengue incidence, the NNHC method
was used. NNHC identifies cases that are spatially close to each other. Disease cases are
placed into a particular cluster based on rules. In this case, a mean random distance threshold
was used (as calculated for NNI). Also, the size of a cluster was established as an area where
a minimum of 10 cases were close to each other in space. The researchers recognize that this
threshold is subjective, however based on the available literature there is no fixed size for
what constitutes a cluster. Only points that fit both criteria (closer than the threshold and
belonging to a group having the minimum number of points) are clustered at the first level
(first-order clusters). This method then conducts subsequent clustering to produce a hierarchy
of clusters where the centroids of first order clusters are then tested using the same rules for
clustering (second order) and this process repeats until all first order clusters eventually
converge to a single cluster or a rule is broken. The resultant clusters were represented as
ellipses around contributing points using a standard deviation value of 1. The value of 1 was
used as suggested by [23] since larger values can create an exaggerated view of the
underlying cluster.
Spatio-temporal clustering
Spatio-temporal clustering was tested using the Knox test. It was first done for each year and
then applied to all years. It is one of the most widely used statistical techniques for testing
space-time interaction [32]. The time (date of onset subtracted from the year 1900) and
geographical location of each case was noted, and for each possible pair of cases, the
distances between them were calculated both in terms of space and time. The distance
between points is divided into two groups, close in distance and not close in distance, and the
time interval is also divided into two groups, close in time and not close in time. To calculate
close in distance and close in time thresholds the mean value for spatial distance and
temporal distance (represented in days) between all points was used. Points falling within
these thresholds were considered close in distance or close in time based on which threshold
was used. Points outside these thresholds were considered either not close in distance or close
in time. The actual number of pairs that falls into each of the four areas is then compared to
the expected number if there was no relationship between closeness in distance and closeness
in time. The expected number of pairs in each area, under strict independence between
distance and the time interval, is obtained by the cross-products of the columns and row
totals. The relationship between observed and expected closeness in space and time is shown
in Tables 1 and 2 [33].
7. Table 1 Logical structure of Knox index for observations
Close in time Not close in time
Close in distance O1 O2 S1
Not close in distance O3 O4 S2
S3 S4 N
Table 2 Logical structure of Knox index for expected values
Close in time Not close in time
Close in distance E1 O2
Not close in distance E3 O4
where 1 2 3 4N O O O O= + + +
1 1 2S O O= +
2 3 4S O O= +
3 1 3S O O= +
4 2 4S O O= +
where ( )1 1 3E S *S / N=
( )2 1 4E S *S / N=
( )3 2 3E S *S / N=
( )4 2 4E S *S / N=
A one-tailed Chi-squared statistic is then used to accept or reject the null hypothesis based on
a 95% confidence value. A rejection of the null hypothesis indicates that there is clustering in
both space and time. Because of the interdependency of cases with respect to space and time,
a Monte Carlo simulation of Chi-squared values for the Knox Index under spatial randomness
was used. Recent work has explored the nature of the distribution of the Knox statistic in
comparison to known distributions like the Chi-squared distribution [32]. In general, Monte
Carlo simulation is the preferred method of generating a distribution of values for a known
area and a known phenomenon. For each routine (of 1000 routines in total) M pairs of
distance and a time interval is randomly chosen from the minimum and maximum values for
distance and time in the dataset. M represents the number of pairs in the dataset (M = N * [N-
1]/2). These values are used to calculate the Knox Index and the Chi-square test. The mean
value for both distance and time was calculated.
Results
Geocoded dengue cases
Table 3 shows the number of DFH cases geocoded each year for the period 1998 to 2004.
From a total of 1212 confirmed DHF cases, 825 cases (68%) were actually geocoded and
8. were used in the analysis. The geocoded cases for 2002 (which was also an epidemic year)
represented only 44% (197 cases) of the original number of cases collected. The low number
of geocoded cases for this year was primarily due to poor documentation or poor reporting of
dengue cases to the Ministry of Health in Trinidad.
Table 3 Number of dengue cases geocoded by year
Year Number of collected cases Number of geocoded cases (and percentage)
1998 207 156 (75)
1999 56 47 (84)
2000 146 129 (88)
2001 178 149 (84)
2002 448 197 (44)
2003 148 130 (88)
2004 29 17 (59)
Total 1212 825 (68)
Spatial distribution of dengue
Figure 1 shows the spatial distribution of DHF cases by year over the 7 year study period.
These results show the transition between the epidemic years 1998 and 2002, with a
significant (G = 57.4; d.f. 6; P < 0.03) decline in the number of cases immediately after 1998.
This was followed by the cases becoming more dispersed or scattered, after which a
significant (G = 87.2; d.f.6; P < 0.01) increase in the number of cases occurred towards 2002
with a high density of cases in space (see Figure 1). Although the results showed where
dengue cases were clustered, it was impossible to demonstrate the full pattern because all
DHF cases, or at least a substantial quantity, were not geocoded for 2002. However, similar
to activity soon after the epidemic in1998, immediately after 2002, a significant decline (G =
54.2; d.f. 6; P < 0.02) in the number of cases is detected.
Figure 1 Spatial distribution of dengue hemorrhagic fever cases in Trinidad, 1998–2004.
Spatial cluster analysis
Nearest neighbor analysis
Table 4 shows the result of the Nearest Neighbor analysis with spatial clustering occurring
for individual years 1998–2003 but absent during 2004. During 2004 only 17 (of 29) DHF
cases were geocoded, which represented a year with a significant decline (P < 0.02) in DHF
cases with very dispersed spatial distribution (a mean value of 6638.1 m according to Table
4), (see Figure 1 and Table 3). Table 4 shows that DHF cases were very densely clustered
across years in space (mean of 598 m), suggesting a higher probability of infection in an area
with a history of infection.
Table 4 Nearest neighbor analysis for DHF cases in Trinidad
Year P-Value Mean Nearest Neighbor Distance (m)
1998 0.0001 1576.9
1999 0.0001 3815.8
9. 2000 0.0001 1902.5
2001 0.0001 1396.7
2002 0.0001 1362.3
2003 0.0001 1877.5
2004 Not significant 6638.1
All years 0.0001 598.0
Figure 2 shows the number of geocoded cases and the Minimum Nearest Neighbor Distance
(MNND) plotted for individual years. Values for MNND in Figure 2 were scaled by dividing
the original value by 10 to aid in visual comparative analysis. Figure 2 shows a reversed trend
when the number of DHF cases and MNND were compared, that is, as the number of DHF
cases increases, the mean distance between cases decreases. In addition, there was significant
(P < 0.03) dispersion between cases soon after an epidemic has occurred, as indicated by the
slope of the MNND line just after 1998 and 2002. It is expected that with more geocoded
cases for 2002 the spatial dispersion (MNND) would have been significantly greater in the
following years. The high spatial dispersal pattern observed represents the mean distance
found between cases after outbreaks.
Figure 2 Geocoded DHF cases and the MNND for individual years 1998–2004 in
Trinidad.
Nearest neighbor hierarchical clustering
The hierarchical ellipses show the identified hotspots of dengue cases for individual years
1998 to 2003 (Figure 3), and represent the spatial distribution of DHF cases detected using
only the first order clusters. The years 1999 and 2004 are not shown in this figure since there
were no clusters identified based on the criteria set for determining the presence of clustering
(a minimum of 10 points and using a mean random distance threshold based on the dataset as
explained in the previous section). Figure 3 shows three main regions of clustering indicated
in Figure 4 by regions A, B and C (encircled by red ellipses) followed by 4 smaller regions D,
E, F and G. Region A and B are the main city capitals in Trinidad, Port of Spain and San
Fernando respectively. Region C represents an equally important major town of Arima,
which is smaller in size than to the identified cities in regions A and B.
Figure 3 Nearest Neighbor Hierarchical Clustering.
Figure 4 Transportation hubs and dengue clusters in Trinidad (A- Port of Spain, B-San
Fernando, C- Arima, D- Chaguanas, E-Sangre Grande, F- Biche, and G- Penal).
Figure 4 shows hierarchical clustered regions superimposed onto a road network of Trinidad.
This figure clearly shows the relationship between dengue clusters and areas within and
around transportation hubs on the island. Regions A, B and C represent the island’s major
transportation hubs between major cities while region E (city of Sangre Grande) represents
another transportation hub which links most of the North Eastern part of the island to
highways and by extension, the major cities in Trinidad. Region G (Penal) represents a
smaller city-like area near the suburban part of the island while region F represents an even
smaller town in the rural part of Trinidad. Figure 4 also reveals a distinct movement of
dengue clusters between types of transportation hubs and epidemic years with clustering
occurring in and around major cities during an epidemic (through major transportation hubs).
10. Following this, the results show migration towards more rural settings, transitioning away
from an epidemic and towards areas with smaller transportation hubs (and nearer to smaller
cities) on the island. The reverse relationship is seen transitioning towards an epidemic year.
Space-time analysis
Using the Knox test the results showed a significant number of dengue cases were clustered
in space (G = 76.7; d.f.6; P < 0.05) and time (G = 67.9; d.f. 6; P < 0.04) within and across
years (∑2
= 345.97 d.f. 10; <0.05) (see Table 3). Table 5 shows that the clustering time
between years is approximately 727 days (about 2 years) and represents the transition
between epidemic years 1998 and 2002, where in 2000 (2 years after) cases began appearing
once more and transitioned towards the epidemic year 2002. Figure 5 shows the close in
distance and close in time values for individual years. Values for close in distance in Figure 5
were scaled by dividing the original value by 1000 to aid in visual comparative analysis.
Table 5 Space-time analysis of DHF cases in Trinidad (1998–2004)
Year P-Value Close in time (days) Close in distance (m)
1998 0.0001 95.1 33799.0
1999 0.0001 125.6 31692.9
2000 0.0001 90.4 35235.9
2001 0.0001 138.3 33049.1
2002 0.0001 124.3 26386.1
2003 0.0001 71.5 30467.4
2004 0.0010 90.1 32158.2
All years 0.0001 727.0 506774.5
Figure 5 Close in distance and close in time values for individual years dengue occurred
in Trinidad.
Figure 5 shows a reversed relationship between close in distance and close in time variables
with the exception of the transition between years 2001 to 2002. This is possibly due to the
fact that only 44% of the DHF cases were geocoded in 2002, but overall the results show
when the number of days decreases between clustering in time the distance between events
gets larger and vice versa. This relationship suggests that when an outbreak of disease occurs
within short time periods there is a faster rate of distribution of the disease across space (see
Figure 5).
Discussion
In the 1970s and 1980s dengue outbreaks occurred in the Caribbean region at 8–10 year
intervals when new serotypes were introduced [6]. However, this epidemiological pattern
changed with the outbreak of dengue in Cuba in 1981 when a DEN-2 outbreak was followed
by a DEN-1 episode [34]. However, in 1994, the fourth serotype DEN-3 was introduced from
Southeast Asia to the Caribbean region after an absence of 17 years. This introduction has
increased the frequency of epidemics from 8 to 10 years to 3 to 5 year intervals, especially in
Trinidad [35]. The present results show the frequency of dengue outbreaks at approximately
727 days or circa every 2 years which suggest that the transition between outbreaks have
further shortened and the frequency of dengue outbreaks reduced from every 3 to 5 years to
11. every 2 to 3 years. This close frequency of outbreaks is cause for concern for DF/DHF in the
Caribbean region and especially in Trinidad can emerge as a major public health problem
with an increase in DHF/DSS burden of disease and the accompanying impacts on morbidity
and mortality rates, DALYs and economic cost ([35,36]).
In Trinidad DF/DHF outbreaks occur during the wet season and are usually associated with
thousands of people seeking medical treatment and hospitalization. Although not reported in
the results section of this paper, this study found most reported cases for dengue recorded
between June and November, coinciding with the temporal periodicity of dengue epidemics
during the wet season on the island. This pattern is very similar to that reported previously for
Trinidad [28] and Puerto Rico [37] but is different from that observed in Paraguay and
Argentina [38]. In the latter two locations, dengue transmission occurs during the first half of
the year in the southern hemisphere and during the second half of the year in the northern
hemisphere, which is equivalent to the wet season for both hemispheres when temperature,
humidity and precipitation are elevated.
The spatial and temporal patterns of reported cases of DHF in Trinidad were analyzed using
the minimum nearest neighbor distance method showed that DHF cases were clustered in
both space and time within and across years (Figure 3). These results show that during an
epidemic year, the number of DHF cases significantly (P < 0.02) increases and then
significantly (P < 0.02) declines with a transition away from the epidemic. These results
suggest that as herd immunity increases, that is as the population at risk becomes infected and
then immune to the circulating dengue serotype, the susceptible population size is reduced
and transmission declines. Therefore, during this time, the dengue virus and by extension
DHF cases tend to occur away from intense spatial clustering towards greater spatial
distribution (see Figure 3). Interestingly, the reverse effect is seen during an epidemic year,
however when the number of days decrease between clustering in time, the distance between
events gets larger and vice versa. This relationship suggests that when an outbreak occurs
within a smaller time period there is a faster rate of distribution of the disease across space. A
good example of this feature may involve what happens when a new serotype is introduced
into a new location. This observed dengue epidemiologic pattern is quite unique and has been
suggested as a mechanism of dispersal in many countries but the present study provides for
the first time evidence for this dengue dispersal pattern and association with transportation
hubs in space and time for Trinidad.
During this study DHF cases were observed clustered in space and time (Knox test) and this
pattern is similar to that observed in Florida, Puerto Rico [4]. The space-time clustering of the
cases suggested the identification of ‘hot spots’ which is similar to that identified by Levine
[23] who used this approach to detect crime waves and crime hot spots in the USA. The
adoption of this ‘hotspot’ approach has clearly graphically identified areas with the highest
dengue activity and once introduced can be an invaluable tool for the analysis of disease
dispersal and diffusion from one community to another, for infectious diseases, as well as
dengue.
It is also evident that during an epidemic there is a greater probability of infection in areas
near and within cities where previous infections or outbreaks had occurred (Table 4), e.g.
clusters are frequently observed along the Eastern Main Road (highway running from East to
West in the northern part of the island) as shown in Figure 4. This observed pattern explains
the emergence of DHF outbreaks in Trinidad which usually occur when there are co-
circulating dengue antibodies within a population, generally the leading risk factor for the
12. development of DHF/DSS within clusters in these townships [6]. This circulation pattern
explains the increase in DHF cases especially in Trinidad where all 4 dengue serotypes are
now endemic [28] and can possibly lead to a massive epidemic in the future with high
morbidity and mortality rates.
The present results show that DHF distribution is correlated with transportation hubs as
indicated by significant clustering in and around these travel centers. These findings extend
the work conducted by Mahabir et al.[5] who identified areas around less voluminous road
networks as conducive locations for outbreaks of DHF in Trinidad, especially those
associated with or connected to major transportation hubs. Although dengue fever is
considered a residential disease its dispersal has been found to be limited to movement of
infected people within and outside their home environment [28,39], house to house human
movement [12], dispersal of infected Aedes aegypti mosquitoes based on the type of housing
patterns and type of road network available in the location [5] and the association with travel
hubs (present study). Conversely, areas of high traffic volumes were found to limit the
movement of mosquitoes [40] and therefore limit the transmission of dengue fever to certain
parts of Trinidad [5].
Additionally, there appears to be a distinct association between dengue clustering and types
of transportation hubs between epidemic years. During an epidemic year DHF cases are
clustered tightly around major city hubs. As the epidemic becomes less intense clusters are
found at smaller transportation hubs where smaller cities and towns exist. The reverse effect
is seen when transitioning towards an epidemic period. These epidemics occur especially in
areas in and around transportation hubs and near cities, which support large commuting and
residential populations. These hot spot areas provide suitable breeding habitats and blood
meals for Ae. aegypti mosquitoes. These results further suggest that the Ae. aegypti peak
feeding times coincides with high traffic commute times to and from these hubs, that is,
during the late afternoon and early morning periods [41]. It is therefore expected that Ae.
aegypti mosquitoes that feed in these environments will stay in and around these sites since
access to blood meals are regularly available for completion of their gonotrophic cycle.
Consequently, this results in the rapid growth of mosquito populations along with possible
intensification of dengue transmission at these hubs. This may explain the observed dengue
transmission patterns at home and at travel hubs and may be responsible for the apparent
relationship found between the distance in both space and time between DHF cases: as the
number of days decreases between appearance of clusters; the distance between cases
increases and vice versa (see Figure 5). This relationship suggests that when an outbreak of
disease occurs within a smaller time period than in previous outbreaks, there is a faster rate of
geographic dispersal of the disease. In addition, this finding suggests that areas around
transportation hubs are suitable environments for the spread of dengue fever. In these
environments, people live in close proximity to one another and provide suitable breeding
sites for the immature stages and resting sites (indoors and outdoors) for adult Ae. aegypti
mosquitoes [42]. It is well established that large populations tend to flock around city areas
and in close proximity to transportation terminals or routes due to available job opportunities
and for quick access to other locations. It is expected that Ae. aegypti mosquitoes feeding in
these environments will not move very far because of the regular supply of blood meals and
artificial breeding sites (8). However, the movement of DF/DHF to smaller towns and cities
during an epidemic can lead to outbreaks especially where less emphasis may be placed on
vector control thus providing suitable conditions for the establishment or renewal of dengue
transmission.
13. Conclusions
In conclusion, the results of this study can be used by public health officials to develop maps
which can aid in the presentation, visualization and understanding of the geographic
distribution of DF/DHF cases, as well as demonstrate trends in the spatial and temporal
patterns of reported DF/DHF cases. The clusters observed near and within travel hubs can
also be used for developing health education and community awareness programs. It is clear
that the current dengue space-time patterns and ‘hotspots’ detection method can be used to
help public health officers plan more effective control programs and provide ‘early warning’
alerts with better emergency responses thus allowing better allocation of resources. In 2008–
2009 this approach was adopted in Trinidad and significantly reduced the incidence of
dengue but was unfortunately discontinued due to logistic and management issues. This
component is absolutely vital to program planners since there is already evidence of Ae.
aegypti resistance to organophosphate and pyrethroid insecticides in the Caribbean [43].
Therefore, in the future, it would be helpful if governments within the Caribbean region could
improve their data collection and recording systems for dengue and other diseases to allow
time series analyses and thus enable early detection, analysis of epidemiologic patterns, and
the management of outbreaks in a more efficient and timely manner.
Competing interests
All authors declare that they have no competing interests.
Authors’ contribution
KDS, RDM, JMS, DDC conceptualized the study, conducted field work, conducted data
analysis and manuscript preparation, KDC assisted in the data analysis and preparation of
manuscript and JBA provided logistic support and assistance for the field study. All authors
read and approved the final manuscript.
Authors’ information
KDS, Ministry of Health, 63 Park Street, Port of Spain, Trinidad, West Indies, RDM and
KDC, Department of Geography and Geoinformation Science, George Mason University,
Fairfax, Virginia, USA, JMS,JBA and DDC, Department of Life Sciences, The University of
the West Indies, St. Augustine, Trinidad and Tobago.
Acknowledgements
This document has been produced with the financial assistance of the European Union. The
Contents of this document are the sole responsibility of the University of the West Indies and
its partners in this action and can under no circumstances be regarded as reflecting the
position of the European Union.
14. References
1. Dizon JJ, San Juan RB: Philippine haemorrhagic fever: epidemiological notes. MD
Journal 1966, 9:566–577.
2. Kalra NL, Wattal Baghvan NGS: Distribution pattern of Aedes (stegomyia) aegypti in
India and some ecological considerations. Bull Indian Soc Mal Commun Dis 1968,
5(307):334.
3. Halstead SB: Dengue review of infectious diseases. Rev Infect Dis 1984, 6:275–288.
4. Morrison AC, Getis A, Santiago M, Rigua-Perez JG, Reiter P: Exploratory Space-Time
Analysis of Reported Dengue Cases during an Outbreak in Florida, Puerto Rico, 1991–
1992. Am J Trop Med Hyg 1998, 58(3):287–298.
5. Mahabir RS, Severson DW, Chadee DD: Impact of road networks on the distribution of
dengue fever cases in Trinidad, West Indies. Acta Trop 2012, 123(3):178–183.
6. Gubler DJ, Kuno G: Dengue and dengue haemorrhagic fever. Wllingford, Oxon CAB Int
1997, 61:67.
7. Chao DL, Halstead SB, Halloran ME, Longini IM Jr: Controlling dengue with vaccines
in Thailand. PLoS Negl Trop Dis 2012, 6(10):e1876.
8. Christophers SR: Aedes aegypti. The yellow fever mosquito. London: Cambridge
University press; 1960:739.
9. García-Rejón JE, Loroño-Pino MA, Farfán-Ale JA, Flores-Flores LF, López-Uribe MP,
Najera-Vazquez Mdel R, Nuñez-Ayala G, Beaty BJ, Eisen L: Mosquito infestation and
dengue virus infection in Aedes aegypti females in schools in Merida, Mexico. Am J Trop
Med Hyg 2011, 84(3):489–496.
10. Teurlai M, Huy R, Cazelles B, Duboz R, Baehr C, Vong S: Can human movements
explain heterogeneous propagation of dengue fever in Cambodia? PLoS Negl Trop Dis
2012, 6(12):e1957.
11. Bhattacharya M, Primark RB, Gerwein J: Are roads and railway roads barriers to
bumble bee movement in a temperate suburban conservation area? Biol Conservation
2003, 109:37–45.
12. Stoddard ST, Forshey BM, Morrison AC, Paz-Soldan VA, Vazquez-Prokopec GM,
Astete H, Reiner RC, Vilcarromero S, Elder JP, Halsey ES, Kochel TJ, Kitron U, Scott TW:
House-to-house human movement drives dengue virus transmission. Proc Natl Acad Sci
2013, 110(3):994–999.
13. Hayes JM, Garcia-Rivera E, Flores-Reyna R, Suarez-Rangel G, Rodriguez-Mata T, Coto-
Portillo R, Baltrons-Orellana R, Mendoza-Rodríguez E, De Garay BF, Jubis-Estrada J,
Hernández-Argueta R, Biggerstaff BJ, Rigau-Pérez JG: Risk factors for infection during a
severe dengue outbreak in El Salvador in 2000. Am J Trop Med Hyg 2003, 69(6):629.
15. 14. Rotela C, Fouque F, Lamfri M, Sabatier P, Introini V, Zaidenberg M, Scavuzzo C:
Space–time Analysis of the Dengue Spreading Dynamics in the 2004 Tartagal Outbreak,
Northern Argentina. Acta Trop 2007, 103(1):1–13.
15. Ali M, Wagatsuma Y, Emch M, Breiman RF: Use of a Geographical Information
System for defining spatial risk for dengue transmission in Bangladesh: role for Aedes
Albopictus in an urban outbreak”. The Am Soc Trop Med Hyg 2003, 69(6):634–640.
16. Ali KA, Abu ES: A correlation study between clinical manifestations of dengue fever
and the degree of liver injury”. J Microbiol Antimicrob 2012, 4(2):45–48.
17. Blacksell SD, Jarman RG, Gibbons RV, Tanganuchitcharnchai A, Mammen MP, et al:
Comparison of seven commercial antigen and antibody enzyme-linked immunosorbent
assays for detection of acute dengue infection. Clin Vaccine Immunol 2012, 19(5):804–
810.
18. Rico-Hesse R, Harrison LM, Salas RA, Tovar D, Nisalak A, Ramos C, Boshell J, de
Mesa MT, Nogueira RM, da Rosa AT: Origins of dengue type 2 viruses associated with
increased pathogenicity in the Americas. Virology 1997, 230(2):244–251.
19. Gubler DJ, Clark GG: Dengue/dengue hemorrhagic fever: the emergence of a global
health problem. Emerg Infect Dis 1995, 1(2):55.
20. Amarakoon D, Chen A, Rawlins S, Chadee D, Taylor M, Stennett R: Dengue epidemics
in the Caribbean-temperature indices to gauge the potential for onset of dengue”. Mitig
Adapt Strateg Glob Chang 2007, 13(4):341–357.
21. Smith MJ, Goodchild MF, Longley PA: Geospatial analysis: a comprehensive guide to
principles, techniques and software tools. 3rd edition. The Winchelsea Press; 2011.
http://www.spatialanalysisonline.com/ga.html.
22. Che P, Wang L, Li Q: The development, optimization and validation of an assay for
high throughput antiviral drug screening against dengue virus. Int J Clin Exp Med 2009,
2(4):363–373.
23. Levine N: “CrimeStat User Workbook III”. Washington, D.C: N ed Levine & Associates;
2004. http://www.icpsr.umich.edu/CrimeStat/workbook.html.
24. Er AC, Rosli MH, Asmahani A, Mohamad NMR, Harsuzilawati M: Spatial mapping of
dengue incidence: a case study in Hulu Langat District, Selangor, Malaysia. Int J Hum
Social Sci 2010, 5(6):410–414.
25. Mora-Covarrubias A, Jimenez-Vega F, Trevino-Aquilar SM: Geospatial distribution
and detection of dengue virus in Aedes (Stegomyia) Aegypti mosquitos in Ciudad
Juárez, Chihuahua, Mexico. Salud Publica Mex 2010, 52(2):127–133.
26. Curtis AJ: Three-dimensional visualization of cultural clusters in the 1878 yellow
fever epidemic of New Orleans. Int J Health Geogr 2008, 7(47):1–10.
16. 27. Chadee DD, Williams FL, Kitron UD: Epidemiology of dengue fever in Trinidad,
West Indies: the outbreak of 1998. Ann Trop Med Parasitol 2004, 98:305–312.
28. Chadee DD, Doon R, Severson DW: Surveillance of dengue fever cases using a novel
Aedes aegypti population sampling method in Trinidad, West Indies: the cardinal
points approach. Acta Trop 2007, 104(1):1–7.
29. Chadee DD: Dengue cases and Aedes aegypti indices in Trinidad, West Indies. Acta
Trop 2009, 112(2):174–180.
30. Jacquez GM: Spatial analysis in epidemiology: Nascent Science or a Failure of
GIS?”. J Geogr Syst 2000, 2(1):91–97.
31. Clark PJ, Evans C: Distance to nearest neighbor as a measure of spatial relationships
in populations. Ecol Soc Am 1954, 35(4):445–453.
32. Eckley DC, Curtin KM: Evaluating the spatiotemporal clustering of traffic incidents.
Computers, Environment and Urban System 2012, 39:70–81.
33. Knox EG, Bartlett MS: The detection of space-time interactions. J R Stat Soc 1964,
13(1):25–30.
34. PAHO: Dengue and dengue hemorrhagic fever in the Ameri- cas: guidelines for
prevention and control 548. Washington, D.C: Pan American Health Organization;
(Scientific Publication; 1994.
35. Chadee DD, Mahabir RS, Sutherland JM: Dengue fever epidemiology and control in
the Caribbean : a status report (2012). Carib Med Jour 2012, 100:56–61.
36. Troyo ASL, Porcelain O, Calderon-Arguedas DDC, Beier JB: Dengue in Costa Rica:
the gap in local scientific research. Pan Am J Public Health 2006, 20:350–360.
37. Barrera R, Amador M, MacKay AJ: Population dynamics of Aedes aegypti and dengue
as influenced by weather and human behavior in San Juan, Puerto Rico. PLoS Negl Trop
Dis 2011, 5(12):e1378.
38. Dick OB, San Martín JL, Montoya RH, del Diego J, Zambrano B, Dayan GH: The
history of dengue outbreaks in the Americas. Am J Trop Med Hyg 2012, 87(4):584.
39. Garcia-Rejon J, Loroño-Pino MA, Farfan-Ale JA, Flores-Flores L, Del Pilar Rosado-
Paredes E, Rivero-Cardenas N, Najera-Vazquez R, Gomez-Carro S, Lira-Zumbardo V,
Gonzalez-Martinez P, Lozano-Fuentes S, Elizondo-Quiroga D, Beaty BJ, Eisen L: Dengue
virus-infected Aedes aegypti in the home environment. Am J Trop Med Hyg 2008, 79:940–
950.
40. Hemme RR, Thomas CL, Chadee DD, Severson DW: Influence of urban landscapes on
population dynamics in a short-distance migrant mosquito: evidence for the dengue
vector Aedes aegypti. PLoS Negl Trop Dis 2010, 4(3):e634.
17. 41. Chadee DD, Martinez R: Landing periodicity of Aedes aegypti with implications for
dengue transmission in Trinidad, West Indies. J Vector Ecol 2000, 25:158–163.
42. Chadee DD: Resting behaviour of Aedes aegypti in Trinidad: with evidence for the
re-introduction of indoor residual spraying (IRS) for dengue control. Parasites &
Vectors 2013, 6:255.
43. Marcombe S, Poupardin R, Darriet F, Reynaud S, Bonnet J, Strode C, Brengues C,
Yébakima A, Ranson H, Corbel V, David JP: Exploring the molecular basis of insecticide
resistance in the dengue vector Aedes aegypti: a case study in Martinique Island
(French West Indies). BMC Genomics 2009, 10(1):494.