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Effective strategies for
scientific graphics
Joel Kelly
jkelly@chem.ubc.ca
October 31, 2013

Thursday, October 31, 2013
Why care about graphics as
a scientist?

2
Thursday, October 31, 2013
Quick Poll

3
Thursday, October 31, 2013
Data
Graphics (scatterplot,
spectrum, micrograph, etc)

Presentation

(to your professor, other
researchers, general public)

Exploration:
“What conclusions
do my data support?”

Visual
Intuition
4
Thursday, October 31, 2013
Graphics reveal data.

• Dual purposes: to explore data, and to
present data.

• Excellent graphics do so with clarity,
efficiency and precision.

• Richness beyond what any summary

statistics (average, standard deviation,
correlation, etc) can provide.
5

Thursday, October 31, 2013
Anscombe’s quartet

• All datasets: mean, variance &
correlation are all identical

6
Thursday, October 31, 2013
Scientific graphics should:

• Show the data
• Allow the viewer to think about the
substance, rather than the
methodology of the experiment
(or something else- font/color/etc)

• Avoid distorting the data
• Reveal multiple layers of detail: big
picture & fine structure

7
Thursday, October 31, 2013
Some examples: the bad

8
Thursday, October 31, 2013
Some examples: the bad

Lie factor: effect shown in graphic
effect shown in data
9
Thursday, October 31, 2013
Some examples: the bad

• Bad data = bad
graphics!

10
Thursday, October 31, 2013
Types of graphics

• Most popular in mass media:
time series & data maps

• Excel is optimized for business users
(earnings reports, market share, etc).

•

• Beware “chartjunk”!
Chemistry is most concerted with relational
graphics.
11

Thursday, October 31, 2013
Effective strategies:
1. Maximize “data ink”: % of graphic
actually used to plot your data.
2. Maximize data density.

•
•

Use small multiples
Combine graphics, images &
numbers to tell a visual story.

3. Use color effectively
4. Revise & edit.
Tufte’s rules: http://www.sealthreinhold.com/tuftes-rules/index.php
Thursday, October 31, 2013

12
Maximize data ink:

13
Thursday, October 31, 2013
Maximize data ink:

14
Thursday, October 31, 2013
Data density
Small multiples:

dougmccune.com/blog
Thursday, October 31, 2013

15
Data density

Frankel & DePace. “Visual Strategies: A Practical Guide to Graphics for Scientists and
Engineers” (Yale University Press 2012)
Thursday, October 31, 2013

16
Data density

• Not all data needs to
be presented as a
graphic

• For example, tables

are sometimes more
effective for small
data sets

(most infographics are silly)
Thursday, October 31, 2013

17
(some infographics
are pretty neat!)

from Wired Magazine’s best infographics
& scientific figures
18
Thursday, October 31, 2013
Using color effectively
Sequential: data that runs from low
to high
Diverging: emphasize max/min
extremes of data
Qualitative: no difference implied
between data classes (best for
nominal/categorical data)

• Colorbrewer (colorbrewer2.org)
• Colorblind people are scientists too!
• Beware the black & white photocopier
Thursday, October 31, 2013

19
Using color effectively

• Minimal color highlights data: builds a
visual story

20
Thursday, October 31, 2013
Tools of the trade

• Understand the limitations of Excel
• Lots of field-specific options: gnuplot,

Origin, R, Matlab, SPSS, Sigmaplot, etc.
(see handout)

• Revise and edit: develop your own
personal style

21
Thursday, October 31, 2013

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Effective Strategies for Creating Scientific graphics

  • 1. Effective strategies for scientific graphics Joel Kelly jkelly@chem.ubc.ca October 31, 2013 Thursday, October 31, 2013
  • 2. Why care about graphics as a scientist? 2 Thursday, October 31, 2013
  • 4. Data Graphics (scatterplot, spectrum, micrograph, etc) Presentation (to your professor, other researchers, general public) Exploration: “What conclusions do my data support?” Visual Intuition 4 Thursday, October 31, 2013
  • 5. Graphics reveal data. • Dual purposes: to explore data, and to present data. • Excellent graphics do so with clarity, efficiency and precision. • Richness beyond what any summary statistics (average, standard deviation, correlation, etc) can provide. 5 Thursday, October 31, 2013
  • 6. Anscombe’s quartet • All datasets: mean, variance & correlation are all identical 6 Thursday, October 31, 2013
  • 7. Scientific graphics should: • Show the data • Allow the viewer to think about the substance, rather than the methodology of the experiment (or something else- font/color/etc) • Avoid distorting the data • Reveal multiple layers of detail: big picture & fine structure 7 Thursday, October 31, 2013
  • 8. Some examples: the bad 8 Thursday, October 31, 2013
  • 9. Some examples: the bad Lie factor: effect shown in graphic effect shown in data 9 Thursday, October 31, 2013
  • 10. Some examples: the bad • Bad data = bad graphics! 10 Thursday, October 31, 2013
  • 11. Types of graphics • Most popular in mass media: time series & data maps • Excel is optimized for business users (earnings reports, market share, etc). • • Beware “chartjunk”! Chemistry is most concerted with relational graphics. 11 Thursday, October 31, 2013
  • 12. Effective strategies: 1. Maximize “data ink”: % of graphic actually used to plot your data. 2. Maximize data density. • • Use small multiples Combine graphics, images & numbers to tell a visual story. 3. Use color effectively 4. Revise & edit. Tufte’s rules: http://www.sealthreinhold.com/tuftes-rules/index.php Thursday, October 31, 2013 12
  • 16. Data density Frankel & DePace. “Visual Strategies: A Practical Guide to Graphics for Scientists and Engineers” (Yale University Press 2012) Thursday, October 31, 2013 16
  • 17. Data density • Not all data needs to be presented as a graphic • For example, tables are sometimes more effective for small data sets (most infographics are silly) Thursday, October 31, 2013 17
  • 18. (some infographics are pretty neat!) from Wired Magazine’s best infographics & scientific figures 18 Thursday, October 31, 2013
  • 19. Using color effectively Sequential: data that runs from low to high Diverging: emphasize max/min extremes of data Qualitative: no difference implied between data classes (best for nominal/categorical data) • Colorbrewer (colorbrewer2.org) • Colorblind people are scientists too! • Beware the black & white photocopier Thursday, October 31, 2013 19
  • 20. Using color effectively • Minimal color highlights data: builds a visual story 20 Thursday, October 31, 2013
  • 21. Tools of the trade • Understand the limitations of Excel • Lots of field-specific options: gnuplot, Origin, R, Matlab, SPSS, Sigmaplot, etc. (see handout) • Revise and edit: develop your own personal style 21 Thursday, October 31, 2013