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Introduction to the Data Management Day
Friday Dec 9th, 2016
Data Consultant, Founding Academic Editor
Susanna-Assunta Sansone, PhD.
Associate Director,
Principal Investigator
Philippe Rocca-Serra, PhD.
Senior Research Lecturer
Alejandra Gonzalez-Beltran, PhD.
Research Lecturer
www.slideshare.net/SusannaSansone/DTP2016
Research life cycle
Image credit to:
Manage and re-use of various research
digital objects, beside data
Datasets
Papers
SOPs
Figures
Workflows
Slides
Codes
Tools
Databases
Algorithms
•  Susanna - research digital objects
o  Findability, Accessibility, Interoperability, Reusability (FAIR) concept
o  Importance of FAIR objects in science and what is in for you
o  Metadata or content standards, why should you care
o  Data management, not a service but R&D and a possible career path
•  Alejandra - information retrieval
o  Databases and repositories of digital objects
o  Focus on ontologies, a type of content standard
o  Application of ontologies in searches
•  Philippe - reporting experimental metadata
o  Experimental design
o  Statistical results
Outline – morning session: lectures
Outline – afternoon session: exercise
•  Alejandra and Philippe – introductions
o  The Investigation, Study, Assays (ISA) format
o  The ISA tools: focus on the Google spreadsheet-based OntoMaton
•  You will structure and describe an
experiment using terms from ontologies
Notes in Lab Books
(information for humans)
Spreadsheets andTables
( the compromise)
Facts as RD
(information
From free text descriptions To structured FAIR representations
http://dx.doi.org/10.1371/journal.pcbi.1004525
http://dx.doi.org/10.1038/sdata.2016.18

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DTP2016

  • 1. Introduction to the Data Management Day Friday Dec 9th, 2016 Data Consultant, Founding Academic Editor Susanna-Assunta Sansone, PhD. Associate Director, Principal Investigator Philippe Rocca-Serra, PhD. Senior Research Lecturer Alejandra Gonzalez-Beltran, PhD. Research Lecturer www.slideshare.net/SusannaSansone/DTP2016
  • 3. Manage and re-use of various research digital objects, beside data Datasets Papers SOPs Figures Workflows Slides Codes Tools Databases Algorithms
  • 4. •  Susanna - research digital objects o  Findability, Accessibility, Interoperability, Reusability (FAIR) concept o  Importance of FAIR objects in science and what is in for you o  Metadata or content standards, why should you care o  Data management, not a service but R&D and a possible career path •  Alejandra - information retrieval o  Databases and repositories of digital objects o  Focus on ontologies, a type of content standard o  Application of ontologies in searches •  Philippe - reporting experimental metadata o  Experimental design o  Statistical results Outline – morning session: lectures
  • 5. Outline – afternoon session: exercise •  Alejandra and Philippe – introductions o  The Investigation, Study, Assays (ISA) format o  The ISA tools: focus on the Google spreadsheet-based OntoMaton •  You will structure and describe an experiment using terms from ontologies Notes in Lab Books (information for humans) Spreadsheets andTables ( the compromise) Facts as RD (information From free text descriptions To structured FAIR representations