The document summarizes the results of simulations run by Jason Luce and Beck Andrews of the University of Michigan at the CHiMaD Phase Field Methods Workshop III & Hackathon in May 2016. It includes summaries of simulations of crystal growth (Q1) reporting on symmetry, velocity, system size effects, and workflow. It also includes simulations coupling phase field models with mechanics (Q2) showing 3D representations of results, a plot of energy over time, and measurements of aspect ratios indicating the mechanics solver is working but the concentration field is slow to change from initial conditions. Details on computational resources used are also provided.
03202014(cirrus no cloud_somecloud_highcloud)-4Jordan Ulmer
I took great efforts in the short time available to me today to understand what the histograms of Cirrus Band 9 images are telling me; by identifying the specific parts of the scene and looking for patterns in the histograms.
I took a look at three scenes, one fully covered with clouds one partially covered and one clear scene.
Sincerely,
--
Jordan D. Ulmer
South Dakota State University Image Processing Lab
http://iplab2out.sdstate.edu/
[Question Paper] Microprocessor and Microcontrollers (Revised Course) [Septem...Mumbai B.Sc.IT Study
This is a Question Papers of Mumbai University for B.Sc.IT Student of Semester - II [Microprocessor and Microcontrollers] (Revised Course). [Year - September / 2013] . . .Solution Set of this Paper is Coming soon..
03202014(cirrus no cloud_somecloud_highcloud)-4Jordan Ulmer
I took great efforts in the short time available to me today to understand what the histograms of Cirrus Band 9 images are telling me; by identifying the specific parts of the scene and looking for patterns in the histograms.
I took a look at three scenes, one fully covered with clouds one partially covered and one clear scene.
Sincerely,
--
Jordan D. Ulmer
South Dakota State University Image Processing Lab
http://iplab2out.sdstate.edu/
[Question Paper] Microprocessor and Microcontrollers (Revised Course) [Septem...Mumbai B.Sc.IT Study
This is a Question Papers of Mumbai University for B.Sc.IT Student of Semester - II [Microprocessor and Microcontrollers] (Revised Course). [Year - September / 2013] . . .Solution Set of this Paper is Coming soon..
Modeling and Simulation of a Robotic Legged System in Forward Progression李光宙 Guangzhou Li
This robotic legged system is a system of rigid bodies connected through joints, in which some links constitute the legs of the system. It is a bipedal walking robotic simulation model which can move forward. Two legs interact with the ground.
[Question Paper] Microprocessor and Microcontrollers (Revised Course) [April ...Mumbai B.Sc.IT Study
This is a Question Papers of Mumbai University for B.Sc.IT Student of Semester - II [Microprocessor and Microcontrollers] (Revised Course). [Year - April / 2015] . . .Solution Set of this Paper is Coming soon..
This is a Question Papers of Mumbai University for B.Sc.IT Student of Semester - II [Computer Graphics] (Old Course). [Year - September / 2013] . . .Solution Set of this Paper is Coming soon..
[Question Paper] Microprocessor and Microcontrollers (Revised Course) [June /...Mumbai B.Sc.IT Study
This is a Question Papers of Mumbai University for B.Sc.IT Student of Semester - II [Microprocessor and Microcontrollers] (Revised Course). [Year - June / 2014] . . .Solution Set of this Paper is Coming soon..
Slide deck from the HydroVision 2018 presentation on Drone work with large spillways. Speaker: David McCreary from NewAgeAerial. Co-presenter: Peter Wade from MID
why we go for RK Method, instead of Euler's Method, Even it also contains the visual explanation of RK Method, Easy to Understand with visual pictures fully Explained.
[Question Paper] Fundamentals of Digital Computing (Revised Course) [April / ...Mumbai B.Sc.IT Study
This is a Question Papers of Mumbai University for B.Sc.IT Student of Semester - I [Fundamentals of Digital Computing] (Revised Course). [Year - April / 2014] . . .Solution Set of this Paper is Coming soon..
[Question Paper] Fundamentals of Digital Computing (Revised Course) [April / ...Mumbai B.Sc.IT Study
This is a Question Papers of Mumbai University for B.Sc.IT Student of Semester - I [Fundamentals of Digital Computing] (Revised Course). [Year - April / 2015] . . .Solution Set of this Paper is Coming soon..
Micrometrics to forecast performance tsunamisTier1app
Tsunami waves travel at the speed of 500 - 600 miles/hr. Normal waves travel at the speed of 5 - 60 miles/hr. Due to technical limitations, even massive Tsunamis are hard to forecast and detect beforehand. In recent times, hyper sensitive micro-metrics measuring technologies are employed to forecast Tsunamis. Similarly, it’s hard to forecast production performance problems beforehand. In this session you will learn the micro-metrics to be measured in dev/test environments that can forecast production performance problems with a fair level of accuracy.
Modeling and Simulation of a Robotic Legged System in Forward Progression李光宙 Guangzhou Li
This robotic legged system is a system of rigid bodies connected through joints, in which some links constitute the legs of the system. It is a bipedal walking robotic simulation model which can move forward. Two legs interact with the ground.
[Question Paper] Microprocessor and Microcontrollers (Revised Course) [April ...Mumbai B.Sc.IT Study
This is a Question Papers of Mumbai University for B.Sc.IT Student of Semester - II [Microprocessor and Microcontrollers] (Revised Course). [Year - April / 2015] . . .Solution Set of this Paper is Coming soon..
This is a Question Papers of Mumbai University for B.Sc.IT Student of Semester - II [Computer Graphics] (Old Course). [Year - September / 2013] . . .Solution Set of this Paper is Coming soon..
[Question Paper] Microprocessor and Microcontrollers (Revised Course) [June /...Mumbai B.Sc.IT Study
This is a Question Papers of Mumbai University for B.Sc.IT Student of Semester - II [Microprocessor and Microcontrollers] (Revised Course). [Year - June / 2014] . . .Solution Set of this Paper is Coming soon..
Slide deck from the HydroVision 2018 presentation on Drone work with large spillways. Speaker: David McCreary from NewAgeAerial. Co-presenter: Peter Wade from MID
why we go for RK Method, instead of Euler's Method, Even it also contains the visual explanation of RK Method, Easy to Understand with visual pictures fully Explained.
[Question Paper] Fundamentals of Digital Computing (Revised Course) [April / ...Mumbai B.Sc.IT Study
This is a Question Papers of Mumbai University for B.Sc.IT Student of Semester - I [Fundamentals of Digital Computing] (Revised Course). [Year - April / 2014] . . .Solution Set of this Paper is Coming soon..
[Question Paper] Fundamentals of Digital Computing (Revised Course) [April / ...Mumbai B.Sc.IT Study
This is a Question Papers of Mumbai University for B.Sc.IT Student of Semester - I [Fundamentals of Digital Computing] (Revised Course). [Year - April / 2015] . . .Solution Set of this Paper is Coming soon..
Micrometrics to forecast performance tsunamisTier1app
Tsunami waves travel at the speed of 500 - 600 miles/hr. Normal waves travel at the speed of 5 - 60 miles/hr. Due to technical limitations, even massive Tsunamis are hard to forecast and detect beforehand. In recent times, hyper sensitive micro-metrics measuring technologies are employed to forecast Tsunamis. Similarly, it’s hard to forecast production performance problems beforehand. In this session you will learn the micro-metrics to be measured in dev/test environments that can forecast production performance problems with a fair level of accuracy.
Tennis stroke detection using inertial data of a smartwatchtionMaynooth University
To assist individuals in sports activities is one of the emerging areas of wearable applications. Among various kinds of sports, detecting tennis strokes faces unique challenges. In this sport the speed of strokes is high, enforcing wearable sensors to have high sampling rates, high-speed bus (to transfer the data to the processor), and the most importantly adequate size of high-speed memory. The constraints encourage researchers to design a custom made hardware to cope with the challenges. The research question that we are trying to address is to show how accurate a commercial smartwatch can detect tennis strokes by using various techniques in machine learning. In this paper, we propose an approach to detect three tennis strokes by utilizing a smartwatch. In our method, the smartwatch is part of a wireless network in which inertial data file is transferred to a laptop where data prepossessing and classification is performed. The data file contains acceleration and angular velocity data of the 3D accelerometer and gyroscope. We also enhanced our method with data prepossessing techniques to elevate data quality. The evaluation of our devised method shows promising results compared to a similar method.
Can Crusher Device - Theory of Machines Mini-ProjectEsraa Fathy
Project | Theory of Machines (2012_2013) Under supervision of Prof.Dr.Mostafa ElHelaly.
Project Objective:
Design a mechanism to demonstrate the application of Theory of Machines – (PE 253)course principles.
The project is based on developing a simulated 3D model for “Can Crusher Mechanism” using SolidWorks then and simulating its motion using MATLAB.
Project Deliverable:
Our team was required to document both the activities performed throughout the project and the application of the mechanism in industry in the form of a Technical Report. The report contains: Brief description of the mechanism function and how it operates _Calculations of the mechanism’ degrees of freedom. _ Position, velocity and acceleration analyses of the mechanism. The calculations, analyses and simulation of the virtual prototype and conclusion. And to present the activities performed throughout the project in the form of a PowerPoint Presentation.
Presentation given on Monday 10 September at the ROOT Users' Workshop 2018 in Sarajevo. Progress update on the Automated Parallel Computation of Collaborative Statistical Models project, a collaboration between the Netherlands eScience Center and Nikhef.
We present an update on our recent efforts to further parallelize RooFit. We have performed extensive benchmarks and identified at least three bottlenecks that will benefit from parallelization. To tackle these and possible future bottlenecks, we designed a parallelization layer that allows us to parallelize existing classes with minimal effort, but with high performance and retaining as much of the existing class's interface as possible. The high-level parallelization model is a task-stealing approach. The implementation is currently based on the bi-directional memory mapped pipe (BidirMMapPipe), but could in the future be replaced by other modes of communication between processes.
A brief information about the SCOP protein database used in bioinformatics.
The Structural Classification of Proteins (SCOP) database is a comprehensive and authoritative resource for the structural and evolutionary relationships of proteins. It provides a detailed and curated classification of protein structures, grouping them into families, superfamilies, and folds based on their structural and sequence similarities.
THE IMPORTANCE OF MARTIAN ATMOSPHERE SAMPLE RETURN.Sérgio Sacani
The return of a sample of near-surface atmosphere from Mars would facilitate answers to several first-order science questions surrounding the formation and evolution of the planet. One of the important aspects of terrestrial planet formation in general is the role that primary atmospheres played in influencing the chemistry and structure of the planets and their antecedents. Studies of the martian atmosphere can be used to investigate the role of a primary atmosphere in its history. Atmosphere samples would also inform our understanding of the near-surface chemistry of the planet, and ultimately the prospects for life. High-precision isotopic analyses of constituent gases are needed to address these questions, requiring that the analyses are made on returned samples rather than in situ.
Richard's entangled aventures in wonderlandRichard Gill
Since the loophole-free Bell experiments of 2020 and the Nobel prizes in physics of 2022, critics of Bell's work have retreated to the fortress of super-determinism. Now, super-determinism is a derogatory word - it just means "determinism". Palmer, Hance and Hossenfelder argue that quantum mechanics and determinism are not incompatible, using a sophisticated mathematical construction based on a subtle thinning of allowed states and measurements in quantum mechanics, such that what is left appears to make Bell's argument fail, without altering the empirical predictions of quantum mechanics. I think however that it is a smoke screen, and the slogan "lost in math" comes to my mind. I will discuss some other recent disproofs of Bell's theorem using the language of causality based on causal graphs. Causal thinking is also central to law and justice. I will mention surprising connections to my work on serial killer nurse cases, in particular the Dutch case of Lucia de Berk and the current UK case of Lucy Letby.
Professional air quality monitoring systems provide immediate, on-site data for analysis, compliance, and decision-making.
Monitor common gases, weather parameters, particulates.
(May 29th, 2024) Advancements in Intravital Microscopy- Insights for Preclini...Scintica Instrumentation
Intravital microscopy (IVM) is a powerful tool utilized to study cellular behavior over time and space in vivo. Much of our understanding of cell biology has been accomplished using various in vitro and ex vivo methods; however, these studies do not necessarily reflect the natural dynamics of biological processes. Unlike traditional cell culture or fixed tissue imaging, IVM allows for the ultra-fast high-resolution imaging of cellular processes over time and space and were studied in its natural environment. Real-time visualization of biological processes in the context of an intact organism helps maintain physiological relevance and provide insights into the progression of disease, response to treatments or developmental processes.
In this webinar we give an overview of advanced applications of the IVM system in preclinical research. IVIM technology is a provider of all-in-one intravital microscopy systems and solutions optimized for in vivo imaging of live animal models at sub-micron resolution. The system’s unique features and user-friendly software enables researchers to probe fast dynamic biological processes such as immune cell tracking, cell-cell interaction as well as vascularization and tumor metastasis with exceptional detail. This webinar will also give an overview of IVM being utilized in drug development, offering a view into the intricate interaction between drugs/nanoparticles and tissues in vivo and allows for the evaluation of therapeutic intervention in a variety of tissues and organs. This interdisciplinary collaboration continues to drive the advancements of novel therapeutic strategies.
Introduction:
RNA interference (RNAi) or Post-Transcriptional Gene Silencing (PTGS) is an important biological process for modulating eukaryotic gene expression.
It is highly conserved process of posttranscriptional gene silencing by which double stranded RNA (dsRNA) causes sequence-specific degradation of mRNA sequences.
dsRNA-induced gene silencing (RNAi) is reported in a wide range of eukaryotes ranging from worms, insects, mammals and plants.
This process mediates resistance to both endogenous parasitic and exogenous pathogenic nucleic acids, and regulates the expression of protein-coding genes.
What are small ncRNAs?
micro RNA (miRNA)
short interfering RNA (siRNA)
Properties of small non-coding RNA:
Involved in silencing mRNA transcripts.
Called “small” because they are usually only about 21-24 nucleotides long.
Synthesized by first cutting up longer precursor sequences (like the 61nt one that Lee discovered).
Silence an mRNA by base pairing with some sequence on the mRNA.
Discovery of siRNA?
The first small RNA:
In 1993 Rosalind Lee (Victor Ambros lab) was studying a non- coding gene in C. elegans, lin-4, that was involved in silencing of another gene, lin-14, at the appropriate time in the
development of the worm C. elegans.
Two small transcripts of lin-4 (22nt and 61nt) were found to be complementary to a sequence in the 3' UTR of lin-14.
Because lin-4 encoded no protein, she deduced that it must be these transcripts that are causing the silencing by RNA-RNA interactions.
Types of RNAi ( non coding RNA)
MiRNA
Length (23-25 nt)
Trans acting
Binds with target MRNA in mismatch
Translation inhibition
Si RNA
Length 21 nt.
Cis acting
Bind with target Mrna in perfect complementary sequence
Piwi-RNA
Length ; 25 to 36 nt.
Expressed in Germ Cells
Regulates trnasposomes activity
MECHANISM OF RNAI:
First the double-stranded RNA teams up with a protein complex named Dicer, which cuts the long RNA into short pieces.
Then another protein complex called RISC (RNA-induced silencing complex) discards one of the two RNA strands.
The RISC-docked, single-stranded RNA then pairs with the homologous mRNA and destroys it.
THE RISC COMPLEX:
RISC is large(>500kD) RNA multi- protein Binding complex which triggers MRNA degradation in response to MRNA
Unwinding of double stranded Si RNA by ATP independent Helicase
Active component of RISC is Ago proteins( ENDONUCLEASE) which cleave target MRNA.
DICER: endonuclease (RNase Family III)
Argonaute: Central Component of the RNA-Induced Silencing Complex (RISC)
One strand of the dsRNA produced by Dicer is retained in the RISC complex in association with Argonaute
ARGONAUTE PROTEIN :
1.PAZ(PIWI/Argonaute/ Zwille)- Recognition of target MRNA
2.PIWI (p-element induced wimpy Testis)- breaks Phosphodiester bond of mRNA.)RNAse H activity.
MiRNA:
The Double-stranded RNAs are naturally produced in eukaryotic cells during development, and they have a key role in regulating gene expression .
3. CHiMaD Phase Field Methods Workshop III & Hackathon – MAY 3-5, 2016
Q1 – Movie of Evolution
4. CHiMaD Phase Field Methods Workshop III & Hackathon – MAY 3-5, 2016
Q1 – Movie of Evolution
5. CHiMaD Phase Field Methods Workshop III & Hackathon – MAY 3-5, 2016
Q1 – Movie of Evolution
Six-fold symmetry appears to work
𝜃0 implementation (not shown) gave smaller offset
than expected [bug]
6. CHiMaD Phase Field Methods Workshop III & Hackathon – MAY 3-5, 2016
Q1 – Tip Velocity vs Time
• Assumptions- tip velocity is highest velocity in system
• v1: velocity based on energy conservation
– No gradient in particle
• v2: velocity of signed distance function
– In interface, max 𝛻𝜙 = 1/ 2
𝑣1 = max 𝐷 𝑛 ⋅ 𝛻𝑢 ≈ max 𝐷
𝛻𝜙
( 𝛻𝜙 + 𝜖)
⋅ 𝛻𝑢
𝑣2 = max
𝜕𝜙
𝜕𝑡
1
𝛻𝜙
≈ max
𝜕𝜙
𝜕𝑡
2
7. CHiMaD Phase Field Methods Workshop III & Hackathon – MAY 3-5, 2016
Q1 – Tip Velocity vs Time
Small system, 20x20 Large system, 100x100
8. CHiMaD Phase Field Methods Workshop III & Hackathon – MAY 3-5, 2016
Q1 – Workflow (flowchart)
Copy existing application folder
(coupledCahnHilliardAllenCahn,
coupledCahnHilliardMechanics)
Modify model file
(coupledCHMechanics.h,
coupledCHAC.h)
Modify residual expressions
(parameters.h)
Modify BCs, ICs (main.cc)
Modify simulation parameters
(parameters.h)
SIMULATE!!!Analyze .vtu output in VisIt
9. CHiMaD Phase Field Methods Workshop III & Hackathon – MAY 3-5, 2016
Q1 – Details
• DOF: 198147, 4922883
• Δ𝑥~0.16, Δ𝑡 = 10−4
• # cores: 16
• Core hours (100k increments): 1.3, 18
• Wall clock time: 4.7 min, 1.1 hrs
• Per-increment time (ms): 2.1, 40
• https://github.com/prisms-center/phaseField
– parameters.h, main.cc, and model files modified per
uploaded code
11. CHiMaD Phase Field Methods Workshop III & Hackathon – MAY 3-5, 2016
Q2 – 3D representation of result
2a)
12. CHiMaD Phase Field Methods Workshop III & Hackathon – MAY 3-5, 2016
Q2 – 3D representation of result
2b)
13. CHiMaD Phase Field Methods Workshop III & Hackathon – MAY 3-5, 2016
Q2 – 3D representation of result
2c)
14. CHiMaD Phase Field Methods Workshop III & Hackathon – MAY 3-5, 2016
Q2 – Energy vs “Time” (Plot)
2a)
Energy
Time
15. CHiMaD Phase Field Methods Workshop III & Hackathon – MAY 3-5, 2016
Q2 – Measurement of Aspect Ratio along
principal directions
• Measurements of Aspect Ratio were performed using
Visit visualization software
– 2a) 1 along all directions, as expected
– 2b) Mechanics solver appears to be working as expected, but
concentration field does not change accordingly (ratio still very
close to 1 for all axis
– 2c) Similar to 2b, the mechanics solver appears to be working
as expected, but the concentration field is again slow to
change – axis ratio essentially unchanged from initial conditions
16. CHiMaD Phase Field Methods Workshop III & Hackathon – MAY 3-5, 2016
Q2 – Details
• # cores: 4 cores (Laptop)
• Wall clock time: 10-20 min
• Core hours: 40-80 min
• PRISMS code can be found at:
https://github.com/prisms-center