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Cell Free Systems
Grundprinzip der MolekularBiologie
Background
● Microorganisms that were able to metabolize PET were found through
environmental samples at a garbage dump. After identifying the responsible
bacterium "Ideonella sakaiensis", two promising proteins could be identified.
“ISF6_4831” is a promising candidate for metabolizing PET. The amino acid
sequence is freely accessible via a database and we were able to design a
plasmid with which the protein can be expressed.
https://www.uniprot.org/uniprot/A0A0K8P6T7
FASTA
>sp|A0A0K8P6T7|PETH_IDESA Poly(ethylene terephthalate) hydrolase OS=Ideonella sakaiensis (strain
NBRC 110686 / TISTR 2288 / 201-F6) OX=1547922 GN=ISF6_4831 PE=1 SV=1
MNFPRASRLMQAAVLGGLMAVSAAATAQTNPYARGPNPTAASLEASAGPFTVRSFTVSRP
SGYGAGTVYYPTNAGGTVGAIAIVPGYTARQSSIKWWGPRLASHGFVVITIDTNSTLDQP
SSRSSQQMAALRQVASLNGTSSSPIYGKVDTARMGVMGWSMGGGGSLISAANNPSLKAAA
PQAPWDSSTNFSSVTVPTLIFACENDSIAPVNSSALPIYDSMSRNAKQFLEINGGSHSCA
NSGNSNQALIGKKGVAWMKRFMDNDTRYSTFACENPNSTRVSDFRTANCS
SQ Sequence 873 BP; 151 A; 342 C; 258 G; 122 T; 0 other;
atgaactttc cccgcgcttc ccgcctgatg caggccgccg ttctcggcgg gctgatggcc 60
gtgtcggccg ccgccaccgc ccagaccaac ccctacgccc gcggcccgaa cccgacagcc 120
gcctcactcg aagccagcgc cggcccgttc accgtgcgct cgttcaccgt gagccgcccg 180
agcggctacg gcgccggcac cgtgtactac cccaccaacg ccggcggcac cgtgggcgcc 240
atcgccatcg tgccgggcta caccgcgcgc cagtcgagca tcaaatggtg gggcccgcgc 300
ctggcctcgc acggcttcgt ggtcatcacc atcgacacca actccacgct cgaccagccg 360
tccagccgct cgtcgcagca gatggccgcg ctgcgccagg tggcctcgct caacggcacc 420
agcagcagcc cgatctacgg caaggtcgac accgcccgca tgggcgtgat gggctggtcg 480
atgggcggtg gcggctcgct gatctcggcg gccaacaacc cgtcgctgaa agccgcggcg 540
ccgcaggccc cgtgggacag ctcgaccaac ttctcgtcgg tcaccgtgcc cacgctgatc 600
ttcgcctgcg agaacgacag catcgccccg gtcaactcgt ccgccctgcc gatctacgac 660
agcatgtcgc gcaatgcgaa gcagttcctc gagatcaacg gtggctcgca ctcctgcgcc 720
aacagcggca acagcaacca ggcgctgatc ggcaagaagg gcgtggcctg gatgaagcgc 780
ttcatggaca acgacacgcg ctactccacc ttcgcctgcg agaacccgaa cagcacccgc 840
gtgtcggact tccgcaccgc gaactgcagc tga 873
Plasmid Design
Cell Free Systems
myTXTL – Cell-Free Expression by Arbor Bioscience
For convenience, myTXTL Master Mix and positive control template can be stored together at –80 °C. Once thawed to set
up a TXTL reaction, myTXTL Master Mixes should be kept on ice and used within 4 hours after thawing. Up to five thaw-
and-freeze cycles are possible without loss of protein production efficiency. When stored and handled under these
conditions, myTXTL kits are stable for 12 months upon arrival.
Numbers
The major factors for the growth of the cell-free protein expression market include the increasing R&D in the fields of
proteomics and genomics, high prevalence of cancer and infectious diseases, and shorter-expression time and structural
modification.
The global market for protein expression should grow from $1.8 billion in 2017 to $3.1 billion by 2022 at a compound annual growth rate
(CAGR) of 11.3% from 2017 through 2022.
Procedure
from page 11
https://arborbiosci.com/wp-content/uploads/myTXTL-Handbook-v01.pdf

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cell-Free Systems.pdf

  • 3. Background ● Microorganisms that were able to metabolize PET were found through environmental samples at a garbage dump. After identifying the responsible bacterium "Ideonella sakaiensis", two promising proteins could be identified. “ISF6_4831” is a promising candidate for metabolizing PET. The amino acid sequence is freely accessible via a database and we were able to design a plasmid with which the protein can be expressed. https://www.uniprot.org/uniprot/A0A0K8P6T7
  • 4. FASTA >sp|A0A0K8P6T7|PETH_IDESA Poly(ethylene terephthalate) hydrolase OS=Ideonella sakaiensis (strain NBRC 110686 / TISTR 2288 / 201-F6) OX=1547922 GN=ISF6_4831 PE=1 SV=1 MNFPRASRLMQAAVLGGLMAVSAAATAQTNPYARGPNPTAASLEASAGPFTVRSFTVSRP SGYGAGTVYYPTNAGGTVGAIAIVPGYTARQSSIKWWGPRLASHGFVVITIDTNSTLDQP SSRSSQQMAALRQVASLNGTSSSPIYGKVDTARMGVMGWSMGGGGSLISAANNPSLKAAA PQAPWDSSTNFSSVTVPTLIFACENDSIAPVNSSALPIYDSMSRNAKQFLEINGGSHSCA NSGNSNQALIGKKGVAWMKRFMDNDTRYSTFACENPNSTRVSDFRTANCS
  • 5. SQ Sequence 873 BP; 151 A; 342 C; 258 G; 122 T; 0 other; atgaactttc cccgcgcttc ccgcctgatg caggccgccg ttctcggcgg gctgatggcc 60 gtgtcggccg ccgccaccgc ccagaccaac ccctacgccc gcggcccgaa cccgacagcc 120 gcctcactcg aagccagcgc cggcccgttc accgtgcgct cgttcaccgt gagccgcccg 180 agcggctacg gcgccggcac cgtgtactac cccaccaacg ccggcggcac cgtgggcgcc 240 atcgccatcg tgccgggcta caccgcgcgc cagtcgagca tcaaatggtg gggcccgcgc 300 ctggcctcgc acggcttcgt ggtcatcacc atcgacacca actccacgct cgaccagccg 360 tccagccgct cgtcgcagca gatggccgcg ctgcgccagg tggcctcgct caacggcacc 420 agcagcagcc cgatctacgg caaggtcgac accgcccgca tgggcgtgat gggctggtcg 480 atgggcggtg gcggctcgct gatctcggcg gccaacaacc cgtcgctgaa agccgcggcg 540 ccgcaggccc cgtgggacag ctcgaccaac ttctcgtcgg tcaccgtgcc cacgctgatc 600 ttcgcctgcg agaacgacag catcgccccg gtcaactcgt ccgccctgcc gatctacgac 660 agcatgtcgc gcaatgcgaa gcagttcctc gagatcaacg gtggctcgca ctcctgcgcc 720 aacagcggca acagcaacca ggcgctgatc ggcaagaagg gcgtggcctg gatgaagcgc 780 ttcatggaca acgacacgcg ctactccacc ttcgcctgcg agaacccgaa cagcacccgc 840 gtgtcggact tccgcaccgc gaactgcagc tga 873
  • 8. myTXTL – Cell-Free Expression by Arbor Bioscience For convenience, myTXTL Master Mix and positive control template can be stored together at –80 °C. Once thawed to set up a TXTL reaction, myTXTL Master Mixes should be kept on ice and used within 4 hours after thawing. Up to five thaw- and-freeze cycles are possible without loss of protein production efficiency. When stored and handled under these conditions, myTXTL kits are stable for 12 months upon arrival.
  • 9. Numbers The major factors for the growth of the cell-free protein expression market include the increasing R&D in the fields of proteomics and genomics, high prevalence of cancer and infectious diseases, and shorter-expression time and structural modification. The global market for protein expression should grow from $1.8 billion in 2017 to $3.1 billion by 2022 at a compound annual growth rate (CAGR) of 11.3% from 2017 through 2022.