1. Automated Syntactic Mediation for Web Service Integration Martin Szomszor ( [email_address] )

16. Architecture Diagram Service providers describe their Web Service interfaces using WSDL. Data consumed and produced is defined using XML Schema. OWL Ontologies are created to Describe the information contained Within Bioinformatics data structures. Serialisation and Realisation Mappings describe how to transform XML dopcuments to and from [OWL-XI] Semantic Annotations associate each WSDL Message part with a concept from the ontology. [OWL XIS] are generated to validate ontology instances.

18. Configurable Mediator

19. Mapping Mechanics <S> <X>foo</X> <X>bar</X> </S> <D> <Y>foo</Y> <Y>bar</Y> </D> Source Document Destination Document m 1 : S/X -> D/Y m 2 : X/$ -> Y/$ Mappings

20. Mapping Mechanics S X “ foo” S/* S/* xsd:string xsd:string X “ bar” D Y “ foo” D/* D/* xsd:string xsd:string Y “ bar” m 1 : S/X -> D/Y m 2 : X/$ -> Y/$

21. Example M-Binding <binding xmlns=&quot;http://www.ecs.soton.ac.uk/~mns03r/mapping/example&quot; xmlns:sns=&quot;http://jaco.ecs.soton.ac.uk/schema/source&quot; xmlns:dns=&quot;http://jaco.ecs.soton.ac.uk/schema/destination&quot;> <mapping id= &quot;1&quot; > <source match= &quot;sns:S/sns:X&quot; /> <destination create= &quot;dns:D[join]/dns:Y[branch]&quot; /> </mapping> <mapping id= ”2&quot; > <source match= &quot;sns:X/$&quot; /> <destination create= &quot;dns:Y[join]/$&quot; /> </mapping> </binding>

22. Bio Example <ddbj:DDBJXML> <ddbj:ACCESSION>AB000059</ddbj:ACCESSION> <ddbj:FEATURES> <ddbj:source> <ddbj:location>1..1755</ddbj:location> <ddbj:qualifiers name=&quot;isolate&quot;>Som1</ddbj:qualifiers> <ddbj:qualifiers name=&quot;lab_host&quot;>Felis domesticus</ddbj:qualifiers> </ddbj:source> </ddbj:FEATURES> </ddbj:DDBJXML> <ont:Sequence_Data_Record> <ont:accession_id>AB000059</ont:accession_id> <ont:has_feature> <ont:Feature_Source> <ont:isolate>Som1</ont:isolate> <ont:lab_host>Felis domesticus</ont:lab_host> <ont:location> <ont:Feature_Location> <ont:start>1</ont:start> <ont:end>1755</ont:end> </ont:Feature_Location> </ont:location> </ont:Feature_source> </ont:has_feature> </ont:Sequence_Data_Record> Simple One-to-One Element and literal Many-to-Many Split literal value Predicate evaluation

23. Example M-Binding <binding xmlns=&quot;http://www.ecs.soton.ac.uk/~mns03r/mapping/ddbj-to-ont-mapping&quot; xmlns:sns=&quot;http://jaco.ecs.soton.ac.uk/schema/DDBJ&quot; xmlns:dns=&quot;http://jaco.ecs.soton.ac.uk/ont/sequencedata&quot;> <mapping id=&quot;1&quot;> <source match=&quot;sns:DDBJXML/sns:ACCESSION&quot;/> <destination create=&quot;dns:Sequence_Data_Record[join]/dns:accession_id[branch]/&quot;/> </mapping> <mapping id=“2”> <source match=&quot;sns:ACCESSION/$&quot;/> <destination create=&quot;dns:accession_id[join]/$&quot;/> </mapping> <mapping id=”3&quot;> <source match=&quot;sns:DDBJXML/sns:FEATURES/sns:source&quot;/> <destination create=&quot;dns:Sequence_Data_Record[join]/dns:has_feature[branch]/ dns:Feature_Source[branch]&quot;/> </mapping> <mapping id=”4&quot;> <source match='sns:source/sns:qualifiers[sns:qualifiers/sns:name/$ = &quot;lab_host&quot;]'/> <destination create=&quot;dns:Feature_Source[join]/dns:lab-host[branch]&quot;/> <mapping> <source match=&quot;sns:qualifiers/$&quot;/> <destination create=&quot;dns:lab-host[join]/$&quot;/> </mapping> </mapping> <mapping id=”5&quot;> <source match=&quot;sns:location/$^[^.]+&quot;/> <destination create=&quot;dns:Location[join]/dns:start[branch]/$&quot;/> </mapping> </binding>

26. Questions and Comments?