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forces and stresses were transmitted                   More generally, the CT-scan/finite-           Gregory M. Erickson is in the Department of
throughout the Allosaurus skull during             element modelling method could be applied         Biological Science, Florida State University,
feeding. The overall result is an impressive       to within- and between-species analyses.          Conradi Building, Tallahassee, Florida 32306, USA.
biomechanical model of the skull’s form,           Topics might include changes in physical          e-mail: gerickson@bio.fsu.edu
function and performance.                          capacities during animal development and          1. Beaupré, G. S. & Carter, D. R. in Biomechanics: Structures
    The model is extraordinary in its three-       evolution; the effects of morphology and              and Systems (ed. Biewener, A. A.) 149–174 (IRL, Oxford,
                                                                                                         1992).
dimensional accuracy. Furthermore, it is           scale on biomechanics; and the functional         2. Rayfield, E. J. et al. Nature 409, 1033–1037 (2001).
made at a regional (skull and jaw) anatom-         significance of anatomical form in extinct        3. Hildebrand, S. F., Gilmore, C. W. & Cochran, D. M. Cold-
ical level, rather than a more common,             animals (many of which cannot be modelled             Blooded Vertebrates (Smithsonian Science Series, New York,
                                                                                                         1930).
single-bone level. Detailed skull-and-jaw          by living analogues). These exciting new          4. Laws, R. R. J. Vert. Paleont. 17, 59A–60A (1997).
finite-element analysis such as this has been      areas of research require expertise from          5. Chapman, R. E. in The Complete Dinosaur (eds. Farlow, J. O.
attempted only rarely for living organisms,        such disciplines as mechanical engineering,           & Brett-Surman, M. K.) 112–135 (Indiana Univ. Press,
                                                                                                         Bloomington, 1997).
for instance with the human models used in         vertebrate palaeontology, evolutionary biol-
                                                                                                     6. Keyak, J. H., Meagher, J. M., Skinner, H. B. & Mote, C. D. Jr
crash tests by the automobile industry. To         ogy and comparative morphology. The                   J. Biomed. Eng. 12, 389–397 (1990).
date, the few applications in vertebrate           trend towards an integrative approach in          7. Rensberger, J. M. in Functional Morphology in Vertebrate
palaeontology have been limited to descrip-        many biology departments over the past                Paleontology (ed. Thomason, J. J.) 151–172 (Cambridge Univ.
                                                                                                         Press, 1995).
tions of single-bone mechanical loading in         decade has encouraged a multidisciplinary         8. Carter, D. R., Mikic, M. & Padian, K. Zool. J. Linn. Soc. 123,
which stress distributions, not stress magni-      approach11. Advances in computer technol-             163–178 (1998).
tude, were studied7,8.                             ogy, and the emergence of a new breed of          9. Thomason, J. J. Can J. Zool. 69, 2326–2333 (1991).
                                                                                                     10. Erickson, G. M. et al. Nature 382, 706–708 (1996).
    Rayfield and colleagues’ analysis indi-        scientist versed in these various fields, point   11. Wake, M. H. Biol. Int. 39, 14–18 (2000).
cates that the maximal bite forces of the          to a rosy future for biomechanical analyses of    12. Erickson, G. M. Proc. Natl Acad. Sci. USA 93, 14623–14627
1.4-tonne Allosaurus were surprisingly low,        extinct organisms.                           s        (1996).
on par with those for much smaller living
carnivorous mammals such as wolves and
leopards9, and at least six-times lower than       Structural biology
sub-maximal estimates for its larger cousin,
Tyrannosaurus rex10. This by no means
suggests that the beast did not pack a lethal      A 3D view of sodium channels
punch, only that it was discriminating in          William A. Catterall
where and how it bit its prey. Rayfield et al.
contend that Allosaurus had a feeding strat-       The voltage-gated sodium channel is essential for nerve cells to function.
egy reminiscent of that of Komodo dragons,         But how does it work? A low-resolution, three-dimensional structure
inflicting rapid, slashing bites primarily to      provides some provocative insights.
the soft tissues which meant that the prey
bled to death. Tyrannosaurus rex, on the

                                                   S
                                                         ensation, emotions, thought and             particular functions of the sodium channel
other hand, with its much more robust teeth,             movement all depend on voltage-gated        (Fig. 1; reviewed in ref. 6). The positively
was capable of smashing through flesh and                sodium channels — transmembrane             charged fourth transmembrane segment
bone, and delivering deeper and perhaps            proteins that initiate action potentials in       (S4) in each domain serves as the voltage sen-
more instantly lethal bites10.                     nerve, muscle and other electrically excitable    sor. The hydrophobic sixth transmembrane
    Contrary to the general view that the          cells. The hallmarks of sodium channels           segments (S6) in the four domains form the
Allosaurus skull was delicate, the authors         include rapid activation and inactivation         wide inner lining of the pore. The preceding
argue that it was extraordinarily strong           when the voltage across the plasma mem-           SS1/SS2 segments (also known as P loops)
relative to the bite force — that is, it was       brane of an excitable cell is depolarized         form the narrower, ion-selective outer lining
‘overbuilt’. The strut-like skull structure was    (voltage-dependent gating), and efficient         of the pore. The short intracellular loop
mechanically well suited for dissipating           and selective conduction of sodium ions           connecting domains III and IV inactivates
biting forces and stresses. Rayfield et al. pro-   through them. On page 1047 of this issue1,        the sodium channel within one or two milli-
pose that the overbuilt skull was adapted          Sato and colleagues provide the first three-      seconds after it opens by folding over and
for absorbing forces from impacts with prey,       dimensional view of the sodium-channel            blocking the inner mouth of the pore. This
and from drawing its teeth through that prey.      protein. The images reveal unexpected             essential function is impaired in some inheri-
For the moment, however, it cannot be said         structural features that may contribute to the    ted diseases of hyperexcitability, including
whether this overbuilt skull structure reflects    protein’s function in electrical excitability.    periodic paralysis, cardiac arrhythmia and
these or other mechanical effects, non-                The -subunit of the sodium channel,           epilepsy (reviewed in ref. 7).
mechanical influences (such as accommo-            which forms the ion-conducting pore, was              What are the three-dimensional struc-
dation of soft tissues or sexual display), or      initially identified as an unusually large        tures of these functional elements of the
simply the typical reptilian condition.            polypeptide (relative molecular mass,             sodium channel? Initial insights came from
    Rayfield and colleagues’ approach can be       260,000) by labelling with specific neuro-        X-ray crystallography and nuclear magnetic
used to tackle other questions in dinosaur         toxins2,3 that modify the generation of action    resonance (NMR) analysis. The crystal
biology. Were overbuilt skulls common to all       potentials. Subsequent DNA-cloning exper-         structure of the pore region of a distantly
theropod dinosaurs? Which biomechanical            iments revealed the amino-acid sequences          related bacterial potassium channel8 defined
or other factors led to the development of         of a family of nine related -subunits in          a narrow outer pore formed by the P loops,
this and different skull morphologies? What        mammals4,5. Each -subunit contains four           and an inner pore surrounded by transmem-
was the mechanical significance of the             homologous domains, I to IV, each with            brane segments that are related to the S6
intracranial joints in dinosaur skulls? Fur-       six predicted transmembrane segments              segments of sodium channels. NMR analysis
ther loading tests with this model, as well as     (Fig. 1).                                         of the structure of the sodium channel’s
bite-force simulations using full-scale mod-           Further work provided a two-dimen-            inactivation gate in solution revealed a rigid
els of dinosaur teeth and jaws, might be used      sional molecular map that showed which            helical structure (an -helix), preceded by
to address some of these questions.                structural features are responsible for which     two turns that position a key hydrophobic
988                                                        © 2001 Macmillan Magazines Ltd            NATURE | VOL 409 | 22 FEBRUARY 2001 | www.nature.com
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                                                                                                                                                                    DAVID EHLERT
                                                                                                                  Top view



                        ΨΨ
                    I                   II              III                   IV

Outside cell
                                –             –                –                   –
                       +        –          +  –            +   +             +
                    12345           6   12345   6      1 234 5   6       123 45        6        Membrane
                       +                   +               +                 +

Inside cell                                                         h

                             Pore

  Voltage sensing                                              Inactivation
                                                                                                                                   1         2

Amino                                                                                                                                                  Out
terminus                                                                                        Carboxy
                                                                                                terminus

                                                                                                                                                        In


                                                                                                                                   3         4
Figure 1 Two-dimensional molecular map of the -subunit of the voltage-gated sodium channel,
                                                                                                                                                     Bottom view
showing how it folds and crosses the plasma membrane. The -subunit is composed of four
homologous domains (I to IV), each of which contains six transmembrane segments (1 to 6).
Cylinders represent -helical transmembrane segments. Other protein segments are illustrated as
straight lines, roughly in proportion to their length in the amino-acid sequence of the sodium
channel. Red indicates the S4 transmembrane segments, which serve as voltage sensors. Green
cylinders and shading indicate the S5 and S6 segments and the SS1/SS2 segment (P loop) between
them, which together form the walls of the sodium-ion-conducting pore. Circles indicate the
positions of amino acids (neutral, positively charged or negatively charged) that are important for
ion conductance and selectivity. indicates sites of N-linked glycosylation (that is, where a
carbohydrate group is attached). The circled ‘h’ (yellow) indicates the hydrophobic motif IFMT                           Cross-section
(isoleucine, phenylalanine, methionine, threonine) in the inactivation gate, which is thought to fold
                                                                                                                               1                 2
into and block the ion-conducting pore.

amino-acid sequence (isoleucine, phenyl-                      by the large amino-terminal and carboxy-
alanine, methionine, threonine) so that it                    terminal regions and the large intracellular
can interact with and block the inner mouth                   loops connecting domains I, II and III. A
of the pore9.                                                 prominent indentation in one side of the
    The structure of the complete sodium                      intracellular mass may hold the inactivation
channel1 now places these functional ele-                     gate formed by the short intracellular loop
ments in a three-dimensional context (Fig.                    connecting domains III and IV, as expected                           3         4
2). Sato et al. determined this structure at 19               from the fact that this loop is accessible to
Å resolution by cryo-electron microscopy                      enzymes, antibodies and chemical reagents       Figure 2 A three-dimensional representation of
and image reconstruction. The images show                     (reviewed in ref. 6).                           the voltage-gated sodium channel, based on
four transmembrane masses arrayed sym-                            The most unexpected features of the         Sato et al.’s images1. Green indicates the central
metrically around a central axis that is per-                 structure are four peripherally located         ion-conducting pore and its intracellular and
pendicular to the membrane. The central                       transmembrane pores, one in each domain         extracellular connections to the bathing
axis is densely stained with ions from the                    (Fig. 2, red). What might these extra pores     medium. Red indicates ‘gating’ pores, containing
bathing solution, providing an image of the                   do? During gating, the voltage sensors (the     the S4 segments, and their connections to the
transmembrane pore and confirming the                         S4 segments) of a sodium channel are pre-       central pore. Numbers 1 to 4 allow one to
widely accepted idea that the four domains                    dicted to move outwards across the mem-         compare the orientations of the intact sodium
of the sodium channels are arranged roughly                   brane along a spiral path, thereby moving       channel (second image from the top) and the
symmetrically around a central pore (Fig. 2,                  their positive gating charges across the        cross-section (bottom). The dashed lines
green). Remarkably, the central pore does                     membrane’s electric field (reviewed in ref.     show the position at which the cross-section
not connect directly to the intracellular and                 6). Outward movement and rotation of the        was taken.
extracellular bathing solutions. Instead, it                  S4 segments has indeed been detected with
splits into four branches that connect it to                  specific chemical labelling methods10–12.          Surprisingly, these apparent gating pores
the bathing solutions at each end (Fig. 2,                    The large outward movements observed for        are not linear, even though they are thought
green).                                                       these transmembrane helices led to the pro-     to accommodate the movement of a linear
    As viewed parallel to the membrane                        posal that these segments move through          S4 segment across the membrane. Perhaps
surface, the sodium-channel protein is bell-                  special, narrow-waisted gating pores in         the structure observed in these images is a
shaped, with about 47% of its mass on the                     each domain, designed to allow the move-        closed state in which transmembrane move-
intracellular side of the membrane and 24%                    ment of substantial gating charge across        ment of the S4 segments is prevented. If so,
on the extracellular side (Fig. 2). These                     the membrane with minimal physical              voltage-dependent activation of the channel
observations are in general agreement with                    motion10. The four narrow transmembrane         would require a conformational change in
expectations from two-dimensional models                      pores now observed in each domain of the        the gating pores to allow movement of the
of the protein structure (Fig. 1). Much of                    structure are prime candidates for these        gating charge, as well as an outward trans-
the intracellular mass must be contributed                    gating pores.                                   location and rotation of the S4 segments
NATURE | VOL 409 | 22 FEBRUARY 2001 | www.nature.com                    © 2001 Macmillan Magazines Ltd                                                        989
news and views
themselves. This would be a previously                 William A. Catterall is in the Department of                            tion). TD is tidal dissipation, which is related
unrecognized step in the gating process.               Pharmacology, School of Medicine, University of                         to the exchange of angular momentum
    This view of the sodium channel at 19 Å            Washington, Seattle, Washington 98195-7280, USA.                        between the Earth and the Moon, and results
resolution whets our appetite for higher-              e-mail: wcatt@u.washington.edu                                          in changes in the Earth–Moon distance, in
resolution images. Analyses of such images,            1. Sato, C. et al. Nature 409, 1047–1051 (2001).                        the spin velocity of the Earth, and in the
together with further structure-based studies          2. Beneski, D. A. & Catterall, W. A. Proc. Natl Acad. Sci. USA 77,      velocity of the Moon’s rotation about the
                                                           639–642 (1980).
of the channel’s function, will help to answer         3. Agnew, W. A., Moore, A. C., Levinson, S. R. & Raftery, M. A.         Earth. Both dynamical ellipticity and tidal
many questions. For example,which mol-                     Biochem. Biophys. Res. Commun. 92, 860–866 (1980).                  dissipation affect Earth’s obliquity and pre-
ecular interactions underlie the gating pro-           4. Noda, M. et al. Nature 312, 121–127 (1984).                          cession, and have to be determined indepen-
                                                       5. Goldin, A. L. et al. Neuron 28, 365–368 (2000).
cess? How do the gating pores observed here            6. Catterall, W. A. Neuron 26, 13–25 (2000).
                                                                                                                               dently of astronomical theory. Each pair of
participate in the overall regulation of sodi-         7. Lehmann-Horn, F. & Jurkat-Rott, K. Physiol. Rev. 79,                 parameters gives rise to one solution. Faced
um-channel function? And how does the                      1317–1372 (1999).                                                   with a large number of slightly different
                                                       8. Doyle, D. A. et al. Science 280, 69–77 (1998).
structure of the central pore allow the selec-         9. Rohl, C. A., Boeckman, F. A., Scheuer, T., Catterall, W. A. &
                                                                                                                               solutions, it becomes necessary to try to
tive passage of sodium ions? In the meantime,              Klevit, R. Biochemistry 38, 855–861 (1999).                         identify the ‘best’ one.
we can celebrate this latest achievement,              10. Yang, N., George, A. L. & Horn, R. Neuron 16, 113–122 (1996).           In one earlier attempt, Lourens et al.5
                                                       11. Cha, A., Snyder, G. E., Selvin, P. R. & Bezanilla, F. Nature 402,
which provides new insight into the struc-                                                                                     correlated cycles seen in Mediterranean
                                                           809–813 (1999).
tural basis of voltage-dependent gating, and           12. Glauner, K. S., Manuzzu, L. M., Gandhi, C. S. & Isacoff, E.         sediments over the past five million years
holds great promise for the future.         s              Nature 402, 813–817 (1999).                                         with summer insolation derived from differ-
                                                                                                                               ent astronomical solutions, one of which was
                                                                                                                               La90(1,1) — that is, with the present-day value
Earth history                                                                                                                  for dynamical ellipticity (     0.9 would mean
                                                                                                                               0.9 times today’s value) and the present-day
Sediments to planetary motion                                                                                                  value for tidal friction (TD 0 would mean
                                                                                                                               no tidal dissipation). They looked at inter-
Marie-France Loutre                                                                                                            ference patterns between precession and
                                                                                                                               obliquity that were recognizable in both the
Celestial mechanics has long been used as an aid for interpreting                                                              sediment data and computed insolation. A
geological records. The compliment is being repaid through analysis of                                                         cross-spectral comparison between the data
Mediterranean sediments.                                                                                                       and summer insolation time series led them
                                                                                                                               to conclude that the La90(1,1) is the most accu-
                                                       (the planet’s varying position on its orbit at

T
      heories about the variation in Earth’s                                                                                   rate astronomical solution from a geological
      orbit have proved helpful in setting the         the beginning of the seasons).                                          point of view — in other words, it results in
      chronology for geological records of                 There are of course limitations to this tun-                        the best fit with the geological record over the
climate. But the reverse can also be true —            ing technique. The climate cycles in the data                           past five million years.
such records can aid astronomers in com-               series must be recognized a priori, proceeding                              More recently, Pälike and Shackleton6
puting Earth’s orbital parameters at times in          from causes to effects, and the climate record                          applied a method based on interference pat-
the remote past. That is the aim of Lourens et         must contain at least some independent indi-                            terns between the precession and obliquity
al., as they describe on page 1029 of this             cation of its age (a so-called control point).                          components derived from geological data,
issue1. They have taken advantage of an                The lag between the astronomically induced                              and the astronomical solutions, to identify
exceptional sediment record, which can be              change and the climate response is usually                              small changes in tidal dissipation and
related to insolation (the amount of solar             assumed to be constant, although it may be                              dynamical ellipticity. They showed that these
radiation reaching Earth’s upper atmos-                different in (for instance) glacial and inter-                          parameters are likely to have remained close
phere). They come to certain conclusions               glacial times. Finally, the accuracy of the                             to the present-day values for the past 25
about the planet’s rotational history over the         chosen target curve — that is, the computed                             million years.
past three million years, and create an astro-         orbital parameters, insolation, or both —                                   In their new work1, Lourens et al. present
nomical timescale to be used in further                is limited, in particular by our imperfect                              a comprehensive study to estimate dynami-
research.                                              knowledge of Solar System dynamics.                                     cal ellipticity and tidal dissipation in the
    Climate records for all except the very                As climate records became longer and                                La90( ,TD) solution between 2.5 and 3 million
recent past exist only as proxies, not as direct       older, it became increasingly necessary to                              years ago. Their work is made possible by a
measurements. Such proxies are derived                 have highly accurate time series showing past                           high-resolution record of the ratio of titani-
from tree rings or cores from various loca-            variation in orbital parameters. Hence the                              um to aluminium from a sediment core in
tions — the deep seas, lakes, continents, ice          proposal at a conference2 some years ago that                           the eastern Mediterranean Sea. For compli-
sheets or glaciers. The timescale is usually           the geological record could be used to obtain                           cated reasons to do with the balance between
drawn from radioactive-decay techniques,               estimates of past variation in orbital parame-                          airborne and river input of material into the
allowing the development of a good chron-              ters, and that those estimates could be used                            Mediterranean, this ratio provides a good
ology for up to a few hundred thousand                 to constrain the predictions based on celes-                            estimate of humidity over northern Africa,
years ago. Another procedure has also been             tial mechanics .                                                        which is controlled by summer insolation.
devised to match (tune) the features in the                By the early 1990s, slightly different                              The data series is tuned against an astronom-
proxy records to those of the Earth’s orbital          astronomical solutions became available for                             ical index computed for different La90( ,TD)
parameters or of the astronomically derived            the period up to about several million years                            astronomical solutions — that is, the astro-
insolation (or both). Since the 1980s it has           ago (see ref. 3 for review). One of them,                               nomical ages of the target are assigned to cor-
become clear that much climate variation               known as the La90( ,TD) solution4, accounts                             relative peaks in the data series. The highest
stems in some way from changes in insol-               for two factors that influence Earth’s orbit.                           linear correlations (the optimal fits) between
ation driven by various astronomical factors           The first, , is the dynamical ellipticity,                              the target and the data series are obtained
— Earth’s eccentricity (the shape of its orbit         which is affected by changes in the distribu-                           when the target is based on solutions ranging
around the Sun), its obliquity (inclination            tion of masses on and in the Earth (ice caps,                           between La90(1.0003,0) and La90(0.9997,1). Such a
of the axis of rotation), and its precession           for instance, or patterns of mantle convec-                             high correlation is not unequivocal evidence
NATURE | VOL 409 | 22 FEBRUARY 2001 | www.nature.com              © 2001 Macmillan Magazines Ltd                                                                           991

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A 3 d view of sodium channels

  • 1. news and views forces and stresses were transmitted More generally, the CT-scan/finite- Gregory M. Erickson is in the Department of throughout the Allosaurus skull during element modelling method could be applied Biological Science, Florida State University, feeding. The overall result is an impressive to within- and between-species analyses. Conradi Building, Tallahassee, Florida 32306, USA. biomechanical model of the skull’s form, Topics might include changes in physical e-mail: gerickson@bio.fsu.edu function and performance. capacities during animal development and 1. Beaupré, G. S. & Carter, D. R. in Biomechanics: Structures The model is extraordinary in its three- evolution; the effects of morphology and and Systems (ed. Biewener, A. A.) 149–174 (IRL, Oxford, 1992). dimensional accuracy. Furthermore, it is scale on biomechanics; and the functional 2. Rayfield, E. J. et al. Nature 409, 1033–1037 (2001). made at a regional (skull and jaw) anatom- significance of anatomical form in extinct 3. Hildebrand, S. F., Gilmore, C. W. & Cochran, D. M. Cold- ical level, rather than a more common, animals (many of which cannot be modelled Blooded Vertebrates (Smithsonian Science Series, New York, 1930). single-bone level. Detailed skull-and-jaw by living analogues). These exciting new 4. Laws, R. R. J. Vert. Paleont. 17, 59A–60A (1997). finite-element analysis such as this has been areas of research require expertise from 5. Chapman, R. E. in The Complete Dinosaur (eds. Farlow, J. O. attempted only rarely for living organisms, such disciplines as mechanical engineering, & Brett-Surman, M. K.) 112–135 (Indiana Univ. Press, Bloomington, 1997). for instance with the human models used in vertebrate palaeontology, evolutionary biol- 6. Keyak, J. H., Meagher, J. M., Skinner, H. B. & Mote, C. D. Jr crash tests by the automobile industry. To ogy and comparative morphology. The J. Biomed. Eng. 12, 389–397 (1990). date, the few applications in vertebrate trend towards an integrative approach in 7. Rensberger, J. M. in Functional Morphology in Vertebrate palaeontology have been limited to descrip- many biology departments over the past Paleontology (ed. Thomason, J. J.) 151–172 (Cambridge Univ. Press, 1995). tions of single-bone mechanical loading in decade has encouraged a multidisciplinary 8. Carter, D. R., Mikic, M. & Padian, K. Zool. J. Linn. Soc. 123, which stress distributions, not stress magni- approach11. Advances in computer technol- 163–178 (1998). tude, were studied7,8. ogy, and the emergence of a new breed of 9. Thomason, J. J. Can J. Zool. 69, 2326–2333 (1991). 10. Erickson, G. M. et al. Nature 382, 706–708 (1996). Rayfield and colleagues’ analysis indi- scientist versed in these various fields, point 11. Wake, M. H. Biol. Int. 39, 14–18 (2000). cates that the maximal bite forces of the to a rosy future for biomechanical analyses of 12. Erickson, G. M. Proc. Natl Acad. Sci. USA 93, 14623–14627 1.4-tonne Allosaurus were surprisingly low, extinct organisms. s (1996). on par with those for much smaller living carnivorous mammals such as wolves and leopards9, and at least six-times lower than Structural biology sub-maximal estimates for its larger cousin, Tyrannosaurus rex10. This by no means suggests that the beast did not pack a lethal A 3D view of sodium channels punch, only that it was discriminating in William A. Catterall where and how it bit its prey. Rayfield et al. contend that Allosaurus had a feeding strat- The voltage-gated sodium channel is essential for nerve cells to function. egy reminiscent of that of Komodo dragons, But how does it work? A low-resolution, three-dimensional structure inflicting rapid, slashing bites primarily to provides some provocative insights. the soft tissues which meant that the prey bled to death. Tyrannosaurus rex, on the S ensation, emotions, thought and particular functions of the sodium channel other hand, with its much more robust teeth, movement all depend on voltage-gated (Fig. 1; reviewed in ref. 6). The positively was capable of smashing through flesh and sodium channels — transmembrane charged fourth transmembrane segment bone, and delivering deeper and perhaps proteins that initiate action potentials in (S4) in each domain serves as the voltage sen- more instantly lethal bites10. nerve, muscle and other electrically excitable sor. The hydrophobic sixth transmembrane Contrary to the general view that the cells. The hallmarks of sodium channels segments (S6) in the four domains form the Allosaurus skull was delicate, the authors include rapid activation and inactivation wide inner lining of the pore. The preceding argue that it was extraordinarily strong when the voltage across the plasma mem- SS1/SS2 segments (also known as P loops) relative to the bite force — that is, it was brane of an excitable cell is depolarized form the narrower, ion-selective outer lining ‘overbuilt’. The strut-like skull structure was (voltage-dependent gating), and efficient of the pore. The short intracellular loop mechanically well suited for dissipating and selective conduction of sodium ions connecting domains III and IV inactivates biting forces and stresses. Rayfield et al. pro- through them. On page 1047 of this issue1, the sodium channel within one or two milli- pose that the overbuilt skull was adapted Sato and colleagues provide the first three- seconds after it opens by folding over and for absorbing forces from impacts with prey, dimensional view of the sodium-channel blocking the inner mouth of the pore. This and from drawing its teeth through that prey. protein. The images reveal unexpected essential function is impaired in some inheri- For the moment, however, it cannot be said structural features that may contribute to the ted diseases of hyperexcitability, including whether this overbuilt skull structure reflects protein’s function in electrical excitability. periodic paralysis, cardiac arrhythmia and these or other mechanical effects, non- The -subunit of the sodium channel, epilepsy (reviewed in ref. 7). mechanical influences (such as accommo- which forms the ion-conducting pore, was What are the three-dimensional struc- dation of soft tissues or sexual display), or initially identified as an unusually large tures of these functional elements of the simply the typical reptilian condition. polypeptide (relative molecular mass, sodium channel? Initial insights came from Rayfield and colleagues’ approach can be 260,000) by labelling with specific neuro- X-ray crystallography and nuclear magnetic used to tackle other questions in dinosaur toxins2,3 that modify the generation of action resonance (NMR) analysis. The crystal biology. Were overbuilt skulls common to all potentials. Subsequent DNA-cloning exper- structure of the pore region of a distantly theropod dinosaurs? Which biomechanical iments revealed the amino-acid sequences related bacterial potassium channel8 defined or other factors led to the development of of a family of nine related -subunits in a narrow outer pore formed by the P loops, this and different skull morphologies? What mammals4,5. Each -subunit contains four and an inner pore surrounded by transmem- was the mechanical significance of the homologous domains, I to IV, each with brane segments that are related to the S6 intracranial joints in dinosaur skulls? Fur- six predicted transmembrane segments segments of sodium channels. NMR analysis ther loading tests with this model, as well as (Fig. 1). of the structure of the sodium channel’s bite-force simulations using full-scale mod- Further work provided a two-dimen- inactivation gate in solution revealed a rigid els of dinosaur teeth and jaws, might be used sional molecular map that showed which helical structure (an -helix), preceded by to address some of these questions. structural features are responsible for which two turns that position a key hydrophobic 988 © 2001 Macmillan Magazines Ltd NATURE | VOL 409 | 22 FEBRUARY 2001 | www.nature.com
  • 2. news and views DAVID EHLERT Top view ΨΨ I II III IV Outside cell – – – – + – + – + + + 12345 6 12345 6 1 234 5 6 123 45 6 Membrane + + + + Inside cell h Pore Voltage sensing Inactivation 1 2 Amino Out terminus Carboxy terminus In 3 4 Figure 1 Two-dimensional molecular map of the -subunit of the voltage-gated sodium channel, Bottom view showing how it folds and crosses the plasma membrane. The -subunit is composed of four homologous domains (I to IV), each of which contains six transmembrane segments (1 to 6). Cylinders represent -helical transmembrane segments. Other protein segments are illustrated as straight lines, roughly in proportion to their length in the amino-acid sequence of the sodium channel. Red indicates the S4 transmembrane segments, which serve as voltage sensors. Green cylinders and shading indicate the S5 and S6 segments and the SS1/SS2 segment (P loop) between them, which together form the walls of the sodium-ion-conducting pore. Circles indicate the positions of amino acids (neutral, positively charged or negatively charged) that are important for ion conductance and selectivity. indicates sites of N-linked glycosylation (that is, where a carbohydrate group is attached). The circled ‘h’ (yellow) indicates the hydrophobic motif IFMT Cross-section (isoleucine, phenylalanine, methionine, threonine) in the inactivation gate, which is thought to fold 1 2 into and block the ion-conducting pore. amino-acid sequence (isoleucine, phenyl- by the large amino-terminal and carboxy- alanine, methionine, threonine) so that it terminal regions and the large intracellular can interact with and block the inner mouth loops connecting domains I, II and III. A of the pore9. prominent indentation in one side of the The structure of the complete sodium intracellular mass may hold the inactivation channel1 now places these functional ele- gate formed by the short intracellular loop ments in a three-dimensional context (Fig. connecting domains III and IV, as expected 3 4 2). Sato et al. determined this structure at 19 from the fact that this loop is accessible to Å resolution by cryo-electron microscopy enzymes, antibodies and chemical reagents Figure 2 A three-dimensional representation of and image reconstruction. The images show (reviewed in ref. 6). the voltage-gated sodium channel, based on four transmembrane masses arrayed sym- The most unexpected features of the Sato et al.’s images1. Green indicates the central metrically around a central axis that is per- structure are four peripherally located ion-conducting pore and its intracellular and pendicular to the membrane. The central transmembrane pores, one in each domain extracellular connections to the bathing axis is densely stained with ions from the (Fig. 2, red). What might these extra pores medium. Red indicates ‘gating’ pores, containing bathing solution, providing an image of the do? During gating, the voltage sensors (the the S4 segments, and their connections to the transmembrane pore and confirming the S4 segments) of a sodium channel are pre- central pore. Numbers 1 to 4 allow one to widely accepted idea that the four domains dicted to move outwards across the mem- compare the orientations of the intact sodium of the sodium channels are arranged roughly brane along a spiral path, thereby moving channel (second image from the top) and the symmetrically around a central pore (Fig. 2, their positive gating charges across the cross-section (bottom). The dashed lines green). Remarkably, the central pore does membrane’s electric field (reviewed in ref. show the position at which the cross-section not connect directly to the intracellular and 6). Outward movement and rotation of the was taken. extracellular bathing solutions. Instead, it S4 segments has indeed been detected with splits into four branches that connect it to specific chemical labelling methods10–12. Surprisingly, these apparent gating pores the bathing solutions at each end (Fig. 2, The large outward movements observed for are not linear, even though they are thought green). these transmembrane helices led to the pro- to accommodate the movement of a linear As viewed parallel to the membrane posal that these segments move through S4 segment across the membrane. Perhaps surface, the sodium-channel protein is bell- special, narrow-waisted gating pores in the structure observed in these images is a shaped, with about 47% of its mass on the each domain, designed to allow the move- closed state in which transmembrane move- intracellular side of the membrane and 24% ment of substantial gating charge across ment of the S4 segments is prevented. If so, on the extracellular side (Fig. 2). These the membrane with minimal physical voltage-dependent activation of the channel observations are in general agreement with motion10. The four narrow transmembrane would require a conformational change in expectations from two-dimensional models pores now observed in each domain of the the gating pores to allow movement of the of the protein structure (Fig. 1). Much of structure are prime candidates for these gating charge, as well as an outward trans- the intracellular mass must be contributed gating pores. location and rotation of the S4 segments NATURE | VOL 409 | 22 FEBRUARY 2001 | www.nature.com © 2001 Macmillan Magazines Ltd 989
  • 3. news and views themselves. This would be a previously William A. Catterall is in the Department of tion). TD is tidal dissipation, which is related unrecognized step in the gating process. Pharmacology, School of Medicine, University of to the exchange of angular momentum This view of the sodium channel at 19 Å Washington, Seattle, Washington 98195-7280, USA. between the Earth and the Moon, and results resolution whets our appetite for higher- e-mail: wcatt@u.washington.edu in changes in the Earth–Moon distance, in resolution images. Analyses of such images, 1. Sato, C. et al. Nature 409, 1047–1051 (2001). the spin velocity of the Earth, and in the together with further structure-based studies 2. Beneski, D. A. & Catterall, W. A. Proc. Natl Acad. Sci. USA 77, velocity of the Moon’s rotation about the 639–642 (1980). of the channel’s function, will help to answer 3. Agnew, W. A., Moore, A. C., Levinson, S. R. & Raftery, M. A. Earth. Both dynamical ellipticity and tidal many questions. For example,which mol- Biochem. Biophys. Res. Commun. 92, 860–866 (1980). dissipation affect Earth’s obliquity and pre- ecular interactions underlie the gating pro- 4. Noda, M. et al. Nature 312, 121–127 (1984). cession, and have to be determined indepen- 5. Goldin, A. L. et al. Neuron 28, 365–368 (2000). cess? How do the gating pores observed here 6. Catterall, W. A. Neuron 26, 13–25 (2000). dently of astronomical theory. Each pair of participate in the overall regulation of sodi- 7. Lehmann-Horn, F. & Jurkat-Rott, K. Physiol. Rev. 79, parameters gives rise to one solution. Faced um-channel function? And how does the 1317–1372 (1999). with a large number of slightly different 8. Doyle, D. A. et al. Science 280, 69–77 (1998). structure of the central pore allow the selec- 9. Rohl, C. A., Boeckman, F. A., Scheuer, T., Catterall, W. A. & solutions, it becomes necessary to try to tive passage of sodium ions? In the meantime, Klevit, R. Biochemistry 38, 855–861 (1999). identify the ‘best’ one. we can celebrate this latest achievement, 10. Yang, N., George, A. L. & Horn, R. Neuron 16, 113–122 (1996). In one earlier attempt, Lourens et al.5 11. Cha, A., Snyder, G. E., Selvin, P. R. & Bezanilla, F. Nature 402, which provides new insight into the struc- correlated cycles seen in Mediterranean 809–813 (1999). tural basis of voltage-dependent gating, and 12. Glauner, K. S., Manuzzu, L. M., Gandhi, C. S. & Isacoff, E. sediments over the past five million years holds great promise for the future. s Nature 402, 813–817 (1999). with summer insolation derived from differ- ent astronomical solutions, one of which was La90(1,1) — that is, with the present-day value Earth history for dynamical ellipticity ( 0.9 would mean 0.9 times today’s value) and the present-day Sediments to planetary motion value for tidal friction (TD 0 would mean no tidal dissipation). They looked at inter- Marie-France Loutre ference patterns between precession and obliquity that were recognizable in both the Celestial mechanics has long been used as an aid for interpreting sediment data and computed insolation. A geological records. The compliment is being repaid through analysis of cross-spectral comparison between the data Mediterranean sediments. and summer insolation time series led them to conclude that the La90(1,1) is the most accu- (the planet’s varying position on its orbit at T heories about the variation in Earth’s rate astronomical solution from a geological orbit have proved helpful in setting the the beginning of the seasons). point of view — in other words, it results in chronology for geological records of There are of course limitations to this tun- the best fit with the geological record over the climate. But the reverse can also be true — ing technique. The climate cycles in the data past five million years. such records can aid astronomers in com- series must be recognized a priori, proceeding More recently, Pälike and Shackleton6 puting Earth’s orbital parameters at times in from causes to effects, and the climate record applied a method based on interference pat- the remote past. That is the aim of Lourens et must contain at least some independent indi- terns between the precession and obliquity al., as they describe on page 1029 of this cation of its age (a so-called control point). components derived from geological data, issue1. They have taken advantage of an The lag between the astronomically induced and the astronomical solutions, to identify exceptional sediment record, which can be change and the climate response is usually small changes in tidal dissipation and related to insolation (the amount of solar assumed to be constant, although it may be dynamical ellipticity. They showed that these radiation reaching Earth’s upper atmos- different in (for instance) glacial and inter- parameters are likely to have remained close phere). They come to certain conclusions glacial times. Finally, the accuracy of the to the present-day values for the past 25 about the planet’s rotational history over the chosen target curve — that is, the computed million years. past three million years, and create an astro- orbital parameters, insolation, or both — In their new work1, Lourens et al. present nomical timescale to be used in further is limited, in particular by our imperfect a comprehensive study to estimate dynami- research. knowledge of Solar System dynamics. cal ellipticity and tidal dissipation in the Climate records for all except the very As climate records became longer and La90( ,TD) solution between 2.5 and 3 million recent past exist only as proxies, not as direct older, it became increasingly necessary to years ago. Their work is made possible by a measurements. Such proxies are derived have highly accurate time series showing past high-resolution record of the ratio of titani- from tree rings or cores from various loca- variation in orbital parameters. Hence the um to aluminium from a sediment core in tions — the deep seas, lakes, continents, ice proposal at a conference2 some years ago that the eastern Mediterranean Sea. For compli- sheets or glaciers. The timescale is usually the geological record could be used to obtain cated reasons to do with the balance between drawn from radioactive-decay techniques, estimates of past variation in orbital parame- airborne and river input of material into the allowing the development of a good chron- ters, and that those estimates could be used Mediterranean, this ratio provides a good ology for up to a few hundred thousand to constrain the predictions based on celes- estimate of humidity over northern Africa, years ago. Another procedure has also been tial mechanics . which is controlled by summer insolation. devised to match (tune) the features in the By the early 1990s, slightly different The data series is tuned against an astronom- proxy records to those of the Earth’s orbital astronomical solutions became available for ical index computed for different La90( ,TD) parameters or of the astronomically derived the period up to about several million years astronomical solutions — that is, the astro- insolation (or both). Since the 1980s it has ago (see ref. 3 for review). One of them, nomical ages of the target are assigned to cor- become clear that much climate variation known as the La90( ,TD) solution4, accounts relative peaks in the data series. The highest stems in some way from changes in insol- for two factors that influence Earth’s orbit. linear correlations (the optimal fits) between ation driven by various astronomical factors The first, , is the dynamical ellipticity, the target and the data series are obtained — Earth’s eccentricity (the shape of its orbit which is affected by changes in the distribu- when the target is based on solutions ranging around the Sun), its obliquity (inclination tion of masses on and in the Earth (ice caps, between La90(1.0003,0) and La90(0.9997,1). Such a of the axis of rotation), and its precession for instance, or patterns of mantle convec- high correlation is not unequivocal evidence NATURE | VOL 409 | 22 FEBRUARY 2001 | www.nature.com © 2001 Macmillan Magazines Ltd 991