The introduction of supernova system: a vector system for single-cell labelin...Div. of Neurogenet., NIG
Here, we introduce the “Supernova system”, which has been reported in the following two papers:
- NMDAR-Regulated Dynamics of Layer 4 Neuronal Dendrites during Thalamocortical Reorganization in Neonates. Mizuno et al., Neuron 2014.
- Supernova: A Versatile Vector System for Single-Cell Labeling and Gene Function Studies in vivo. Luo et al. Sci. Rep.2016.
Lab web site: https://www.nig.ac.jp/labs/NeurGen/
Supernova support site: http://snsupport.webcrow.jp/
contact: tiwasato(at)nig.ac.jp
Apollo is a web-based application that supports and enables collaborative genome curation in real time, allowing teams of curators to improve on existing automated gene models through an intuitive interface. Apollo allows researchers to break down large amounts of data into manageable portions to mobilize groups of researchers with shared interests.
Rfam is an open access database (hosted at the Wellcome Trust Sanger Institute) containing information for RNA families and annotations for millions of RNA genes. Designed to work in a similar way to the Pfam database of protein families, Rfam uses a similar model for annotation and display and is built on the same principle of open access to the data. Each entry in the Rfam database includes multiple sequence alignments, a secondary structure and probabilistic models known as covariance models (CMs), these models can simultaneously handle an RNA sequence and its structure. In conjunction with the Infernal software package, Rfam CMs can be used to search genomes or other DNA sequence databases for homologs to known structural RNA families. You can find more about Rfam at http://rfam.janelia.org/
Introduction to protein bioinformatics, including databases like IntrPro, Uniprot, and PDB.
- An introduction to protein families, domains, sequence features, and protein signatures.
- An introduction to protein structure prediction.
The introduction of supernova system: a vector system for single-cell labelin...Div. of Neurogenet., NIG
Here, we introduce the “Supernova system”, which has been reported in the following two papers:
- NMDAR-Regulated Dynamics of Layer 4 Neuronal Dendrites during Thalamocortical Reorganization in Neonates. Mizuno et al., Neuron 2014.
- Supernova: A Versatile Vector System for Single-Cell Labeling and Gene Function Studies in vivo. Luo et al. Sci. Rep.2016.
Lab web site: https://www.nig.ac.jp/labs/NeurGen/
Supernova support site: http://snsupport.webcrow.jp/
contact: tiwasato(at)nig.ac.jp
Apollo is a web-based application that supports and enables collaborative genome curation in real time, allowing teams of curators to improve on existing automated gene models through an intuitive interface. Apollo allows researchers to break down large amounts of data into manageable portions to mobilize groups of researchers with shared interests.
Rfam is an open access database (hosted at the Wellcome Trust Sanger Institute) containing information for RNA families and annotations for millions of RNA genes. Designed to work in a similar way to the Pfam database of protein families, Rfam uses a similar model for annotation and display and is built on the same principle of open access to the data. Each entry in the Rfam database includes multiple sequence alignments, a secondary structure and probabilistic models known as covariance models (CMs), these models can simultaneously handle an RNA sequence and its structure. In conjunction with the Infernal software package, Rfam CMs can be used to search genomes or other DNA sequence databases for homologs to known structural RNA families. You can find more about Rfam at http://rfam.janelia.org/
Introduction to protein bioinformatics, including databases like IntrPro, Uniprot, and PDB.
- An introduction to protein families, domains, sequence features, and protein signatures.
- An introduction to protein structure prediction.
Our slides presented at the 34th annual meeting of the Molecular Biology Society of Japan.
Note that this version has been modified to publish under a CC-BY.