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Radiobiological motivation for LhARA
Dr Jason Parsons
Cancer Research Centre
Department of Molecular and Clinical Cancer Medicine
Radiotherapy in cancer treatment
• ~50 % of all cancer patients will receive radiotherapy.
• Conventional (photon) radiotherapy is the still the most effective
treatment for solid tumours (e.g. head and neck).
• Dose rates of ~1-5 Gy/min utilised.
• Significant irradiation of normal tissues and organs at risk in
proximity to the tumour being treated.
• Biological factors including oxygen (hypoxia) and inherent
radioresistance of tumours (e.g. glioblastoma) are a barrier to
effective treatment.
Particle beam therapy (PBT)
• In contrast to
conventional (x-ray)
radiation, PBT can deliver
energy within a finite
region (termed the Bragg
peak) which can directly
target cancer cells.
• This limits radiation dose
to proximal normal,
healthy tissues and
organs at risk.
Depth in tissue
Relative
dose
Distal
fall-off
Tumour
Particle
energy
LET
Bragg
peak
• Currently, ~90 PBT centres worldwide and 40 in construction
demonstrating the importance of this precision radiotherapy.
Vitti and Parsons (2019) Cancers
Eye Proton Therapy Centre and Radiobiology
Research Facilities at Clatterbridge
• Successfully treating patients (currently ~300/year) with cancers of the eye for
>25 years with 60 MeV proton beam.
• Limited time and proton beam access due to patient treatments.
• Limited in vitro capabilities and unable to perform in vivo research.
Biological uncertainties with particle radiotherapy
Bragg peak
Depth in tissue
Relative
dose
Distal
fall-off
Tumour
Proton
energy
LET
A constant relative biological effectiveness (RBE) value of 1.1 is used in clinical
practice for protons. However, there is a large uncertainty with using this
approach as RBE is variable and dependent on many factors, including:-
• Proton energy (therefore linear energy transfer, LET) and dose/dose rate.
• Radiosensitivity/radiobiology of the specific tumour tissue (e.g. based on DNA
repair capacity, hypoxia and tumour microenvironment).
• Biological end-point examined (e.g. clonogenic survival, tumour growth delay).
Taken from Paganetti and van Luijk (2013) Sem Rad Oncol
Vitti and Parsons (2019) Cancers
Further research exploiting the biological impact of particle ions is vital for
investigating RBE, and thus improving clinical use of PBT.
DNA damage and relationship to LET
• Low-LET radiation produces repairable DNA
damage (e.g. single and double strand breaks).
• High-LET radiation generates increased
amounts of complex DNA damage (containing
multiple DNA lesions) that are more difficult to
repair, utilises multiple DNA repair pathways,
and which can enhance cell death.
0
5
10
15
20
25
30
35
40
45
Control 0 1 2 4
%
Tail
DNA
Hours post-IR
Proton-IR (58 MeV)
Proton-IR (58 MeV; modified)
Proton-IR (11 MeV)
Proton-IR (11 MeV; modified)
****
*
***
**
CDD
Carter et al, and Parsons (2018) IJROBP
Carter et al, and Parsons (2019) IJROBP
0.1
1
0 1 2 3 4
Surviving
fraction
Dose (Gy)
58 MeV
11 MeV
Low-LET
High-LET
Low-LET
Low-LET (modified assay)
High-LET
High-LET (modified assay)
RBE=~1.7
Modulation of proton-induced cellular sensitivity
following siRNA knockdown screening
Low-LET protons
0
1
2
3
4
5
6
Mock
MPND
UCHL1
BRCC3
USP4
JOSDI
FBX08
DUB3
FBX07
DUB1A
CYLD
USP27X
BAP1
USP3
OTUD1
AMSH
USP9X
MYSM1
OTUD4
OTUB2
USP6
USP44
USP52
OTUD6B
CEZANNE
SENP2
A20
USP47
OTUD7
USP41
UBL3
USP45
USP48
USP50
USP28
USP51
USP54
UBL4
USP15
USP5
USP9Y
USP40
USP49
USP21
UBR1
USP53
USP16
OTUD5
UBTD1
USP14
USP18
ATNX3
USP46
USP37
DC-UBP
USP26
USP25
OTUB1
USP2
USP1
UCHL5
USP10
USP13
USP24
USP22
USP17
USP8
USP35
PARP11
USP20
USP12
JOSD2
USP31
USP29
USP11
UCHL3
USP42
STAMBP1
USPL1
USP19
USP32
USP30
YODI
USP38
USP34
USP7
UEVLD
VCPIP1
ZRANB1
UFD1L
USP33
USP36
USP43
USP39
Normalised
surviving
fraction
0
1
2
3
4
5
6
Mock
UEVLD
USP16
USP13
USP17
USP45
USP54
USP46
USP49
USP51
USP1
USP34
USP11
USP19
OTUB1
UBR1
USP48
UBL3
USP50
UBTD1
UCHL1
USP5
USP14
CEZAN…
DC-UBP
UCHL3
UBL4
USP10
UMPK
OTUB2
USP2
USP12
JOSD2
USP18
UCHL5
A20
ATNX3
PARP11
AMSH
USP3
USP52
USP27X
USP40
USP22
BRCC3
BAP1
USP25
USP33
MYSM1
USP15
OTUD6B
OTUD1
USP42
USP26
USP24
USP32
USP28
USP44
USP20
JOSD1
USP30
USP41
USP35
USP47
USP29
USP37
VCPIP1
USP4
USP21
USP38
USP53
OTUD4
OTUD5
USP8
DUB3
FBX07
ZRANB1
UFD1L
DUB1A
MPND
SENP2
USP9Y
YODI
USP43
STAMB…
USP39
USP36
FBX08
USP6
USP9X
USP31
UBL5
USP7
CYLD
Normalised
surviving
fraction
High-LET protons
HeLa
Carter et al, and Parsons (2019) IJROBP
• Significant variability in the response of cells to low and high-LET protons
dependent on cellular proteome.
• Will identify specific cellular targets (e.g. for combinatorial drugs/inhibitors) to
exacerbate the effects of PBT.
• Using ultra high-dose rates (>100 Gy/s).
FLASH radiotherapy
• However, the mechanism of the FLASH effect is unclear (role of oxygen?).
• Impact of FLASH on specific tumour models not well defined.
• Effect of FLASH photon vs protons (and impact of LET), not been demonstrated.
Further research exploiting the biological impact of FLASH on appropriate in
vitro and in vivo models is important for translation to the clinic.
Challenges and opportunities for PBT
radiobiology research
Challenges
• The radiobiology of PBT at the molecular and cellular level is still not entirely
understood (e.g. impact of LET, dose rate delivery).
• Other factors that impact on RBE of PBT not well defined (e.g. hypoxia, tumour
microenvironment, drug-IR combinations, fractionated doses, FLASH).
• More research required using specific and validated cancer models, plus
relevant normal tissue models, in vitro (e.g. 3D spheroids/organoids) and in vivo.
• Significant lack of access to PBT facilities for radiobiology research.
• Current facilities not fully equipped for in vitro, but more so in vivo experiments.
Opportunities with LhARA
• Highly accessible facility for both in vitro and in vivo particle ion radiobiology
research, capable of analysing a multitude of biological end-points.
• Enhance our understanding of the radiobiological effects of particle ions (protons
and carbon ions), including examining dose delivery (FLASH) and combinatorial
treatments through high-throughput screening.
• Significant opportunity to develop research that will have a major Worldwide
impact through the optimisation and personalisation of cancer treatments using
PBT in the clinic.
Feedback from Yolanda Prezado
• LhARA is a very promising facility which would offer unique beam features and
infrastructure for radiobiology research.
• LhARA has the potential to drive a change in current clinical practice by
increasing the wealth of radiobiological knowledge.
The main characteristics to be highlighted are:-
Flexibility
Flexible temporal and spatial beam structure allowing exhaustive investigations of
beam parameters (pulse length, repetition rate, instantaneous dose, FLASH) on
biological response utilising a stable beam.
Different beam species
One of the few places in the World to offer the evaluation of different particle ions
(protons to heavier ions) within the same facility.
Accessibility
Greater accessibility of LhARA in comparison to clinical facilities, with greater
flexibility (e.g. in vitro and in vivo experiments; dose fractionation; more complex
biological end-points; immunotherapy/chemotherapy combinations).

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02-pre-CDR-Radiobiology-Motivation-March-2020.pptx

  • 1. Radiobiological motivation for LhARA Dr Jason Parsons Cancer Research Centre Department of Molecular and Clinical Cancer Medicine
  • 2. Radiotherapy in cancer treatment • ~50 % of all cancer patients will receive radiotherapy. • Conventional (photon) radiotherapy is the still the most effective treatment for solid tumours (e.g. head and neck). • Dose rates of ~1-5 Gy/min utilised. • Significant irradiation of normal tissues and organs at risk in proximity to the tumour being treated. • Biological factors including oxygen (hypoxia) and inherent radioresistance of tumours (e.g. glioblastoma) are a barrier to effective treatment.
  • 3. Particle beam therapy (PBT) • In contrast to conventional (x-ray) radiation, PBT can deliver energy within a finite region (termed the Bragg peak) which can directly target cancer cells. • This limits radiation dose to proximal normal, healthy tissues and organs at risk. Depth in tissue Relative dose Distal fall-off Tumour Particle energy LET Bragg peak • Currently, ~90 PBT centres worldwide and 40 in construction demonstrating the importance of this precision radiotherapy. Vitti and Parsons (2019) Cancers
  • 4. Eye Proton Therapy Centre and Radiobiology Research Facilities at Clatterbridge • Successfully treating patients (currently ~300/year) with cancers of the eye for >25 years with 60 MeV proton beam. • Limited time and proton beam access due to patient treatments. • Limited in vitro capabilities and unable to perform in vivo research.
  • 5. Biological uncertainties with particle radiotherapy Bragg peak Depth in tissue Relative dose Distal fall-off Tumour Proton energy LET A constant relative biological effectiveness (RBE) value of 1.1 is used in clinical practice for protons. However, there is a large uncertainty with using this approach as RBE is variable and dependent on many factors, including:- • Proton energy (therefore linear energy transfer, LET) and dose/dose rate. • Radiosensitivity/radiobiology of the specific tumour tissue (e.g. based on DNA repair capacity, hypoxia and tumour microenvironment). • Biological end-point examined (e.g. clonogenic survival, tumour growth delay). Taken from Paganetti and van Luijk (2013) Sem Rad Oncol Vitti and Parsons (2019) Cancers Further research exploiting the biological impact of particle ions is vital for investigating RBE, and thus improving clinical use of PBT.
  • 6. DNA damage and relationship to LET • Low-LET radiation produces repairable DNA damage (e.g. single and double strand breaks). • High-LET radiation generates increased amounts of complex DNA damage (containing multiple DNA lesions) that are more difficult to repair, utilises multiple DNA repair pathways, and which can enhance cell death. 0 5 10 15 20 25 30 35 40 45 Control 0 1 2 4 % Tail DNA Hours post-IR Proton-IR (58 MeV) Proton-IR (58 MeV; modified) Proton-IR (11 MeV) Proton-IR (11 MeV; modified) **** * *** ** CDD Carter et al, and Parsons (2018) IJROBP Carter et al, and Parsons (2019) IJROBP 0.1 1 0 1 2 3 4 Surviving fraction Dose (Gy) 58 MeV 11 MeV Low-LET High-LET Low-LET Low-LET (modified assay) High-LET High-LET (modified assay) RBE=~1.7
  • 7. Modulation of proton-induced cellular sensitivity following siRNA knockdown screening Low-LET protons 0 1 2 3 4 5 6 Mock MPND UCHL1 BRCC3 USP4 JOSDI FBX08 DUB3 FBX07 DUB1A CYLD USP27X BAP1 USP3 OTUD1 AMSH USP9X MYSM1 OTUD4 OTUB2 USP6 USP44 USP52 OTUD6B CEZANNE SENP2 A20 USP47 OTUD7 USP41 UBL3 USP45 USP48 USP50 USP28 USP51 USP54 UBL4 USP15 USP5 USP9Y USP40 USP49 USP21 UBR1 USP53 USP16 OTUD5 UBTD1 USP14 USP18 ATNX3 USP46 USP37 DC-UBP USP26 USP25 OTUB1 USP2 USP1 UCHL5 USP10 USP13 USP24 USP22 USP17 USP8 USP35 PARP11 USP20 USP12 JOSD2 USP31 USP29 USP11 UCHL3 USP42 STAMBP1 USPL1 USP19 USP32 USP30 YODI USP38 USP34 USP7 UEVLD VCPIP1 ZRANB1 UFD1L USP33 USP36 USP43 USP39 Normalised surviving fraction 0 1 2 3 4 5 6 Mock UEVLD USP16 USP13 USP17 USP45 USP54 USP46 USP49 USP51 USP1 USP34 USP11 USP19 OTUB1 UBR1 USP48 UBL3 USP50 UBTD1 UCHL1 USP5 USP14 CEZAN… DC-UBP UCHL3 UBL4 USP10 UMPK OTUB2 USP2 USP12 JOSD2 USP18 UCHL5 A20 ATNX3 PARP11 AMSH USP3 USP52 USP27X USP40 USP22 BRCC3 BAP1 USP25 USP33 MYSM1 USP15 OTUD6B OTUD1 USP42 USP26 USP24 USP32 USP28 USP44 USP20 JOSD1 USP30 USP41 USP35 USP47 USP29 USP37 VCPIP1 USP4 USP21 USP38 USP53 OTUD4 OTUD5 USP8 DUB3 FBX07 ZRANB1 UFD1L DUB1A MPND SENP2 USP9Y YODI USP43 STAMB… USP39 USP36 FBX08 USP6 USP9X USP31 UBL5 USP7 CYLD Normalised surviving fraction High-LET protons HeLa Carter et al, and Parsons (2019) IJROBP • Significant variability in the response of cells to low and high-LET protons dependent on cellular proteome. • Will identify specific cellular targets (e.g. for combinatorial drugs/inhibitors) to exacerbate the effects of PBT.
  • 8. • Using ultra high-dose rates (>100 Gy/s). FLASH radiotherapy • However, the mechanism of the FLASH effect is unclear (role of oxygen?). • Impact of FLASH on specific tumour models not well defined. • Effect of FLASH photon vs protons (and impact of LET), not been demonstrated. Further research exploiting the biological impact of FLASH on appropriate in vitro and in vivo models is important for translation to the clinic.
  • 9. Challenges and opportunities for PBT radiobiology research Challenges • The radiobiology of PBT at the molecular and cellular level is still not entirely understood (e.g. impact of LET, dose rate delivery). • Other factors that impact on RBE of PBT not well defined (e.g. hypoxia, tumour microenvironment, drug-IR combinations, fractionated doses, FLASH). • More research required using specific and validated cancer models, plus relevant normal tissue models, in vitro (e.g. 3D spheroids/organoids) and in vivo. • Significant lack of access to PBT facilities for radiobiology research. • Current facilities not fully equipped for in vitro, but more so in vivo experiments. Opportunities with LhARA • Highly accessible facility for both in vitro and in vivo particle ion radiobiology research, capable of analysing a multitude of biological end-points. • Enhance our understanding of the radiobiological effects of particle ions (protons and carbon ions), including examining dose delivery (FLASH) and combinatorial treatments through high-throughput screening. • Significant opportunity to develop research that will have a major Worldwide impact through the optimisation and personalisation of cancer treatments using PBT in the clinic.
  • 10. Feedback from Yolanda Prezado • LhARA is a very promising facility which would offer unique beam features and infrastructure for radiobiology research. • LhARA has the potential to drive a change in current clinical practice by increasing the wealth of radiobiological knowledge. The main characteristics to be highlighted are:- Flexibility Flexible temporal and spatial beam structure allowing exhaustive investigations of beam parameters (pulse length, repetition rate, instantaneous dose, FLASH) on biological response utilising a stable beam. Different beam species One of the few places in the World to offer the evaluation of different particle ions (protons to heavier ions) within the same facility. Accessibility Greater accessibility of LhARA in comparison to clinical facilities, with greater flexibility (e.g. in vitro and in vivo experiments; dose fractionation; more complex biological end-points; immunotherapy/chemotherapy combinations).