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A Christmas Prayer
by Robert Louis Stevenson

Loving God, help us to remember
   the birth of Jesus that we may
   share in the songs of the
   angels, the gladness of the
   shepherds, and the worship of
   the wise men.
Close the door of hate and open
   the door of love all over the
   world. Let kindness come with
   every gift and good desires
   with every greeting. Deliver us
   from evil by the blessing which
   Christ brings.
May our minds be filled with
   grateful thoughts and our
   hearts with forgiveness, for
   Jesus‟ sake.
Amen.
Nucleotide Metabolism



                                 adenosine triphosphate

               Noel Martin S. Bautista, MD, MBAH
   Department of Biochemistry, Molecular Biology and Nutrition
Introduction
   Overview of nucleotide metabolism and
    biological functions of nucleotides
   Metabolism of purine nucleotides
   Clinical disorders of purine metabolism
   Metabolism of pyrimidine nucleotides
   Clinical disorders of pyrimidine metabolism
   Metabolism of deoxyribonucleotides
   Different pharmacologic agents that interfere
    with nucleotide metabolism

                                                    4
Nucleobases




              5
base + sugar =

    Nucleosides
   have either
      -D-ribose or
      -D-deoxyribose
    in an N-glycosidic
    linkage between
    C-1 of the sugar
    and N-9 (purine)
    or N-1 (pyrimidine)

        Ribonucleosides
                      6
base + sugar =

    Nucleosides
   have either
      -D-ribose or
      -D-deoxyribose
    in an N-glycosidic
    linkage between
    C-1 of the sugar
    and N-9 (purine)
    or N-1 (pyrimidine)

    Deoxyribonucleosides
                       7
Nucleoside + PO4 =

      Nucleotides
     have one or more
      phosphate groups
      esterified to the
      sugar




      Deoxyribonucleotides
          Ribonucleotides
                         8
Metabolic Functions of Nucleotides
     Function                  Selected Examples
     1. Energy metabolism      ATP (muscle contraction, etc)
     2. Monomeric units of
                               NTPs and dNTPs (substrates for RNA and DNA)
        nucleic acids
                               Adenosine (coronary blood flow); ADP (platelet
     3. Physiological
                               aggregation); cAMP and cGMP (second
        mediators
                               messengers)
                               GTP (mRNA capping); tetrahydrobiopterin
     4. Precursor function
                               (hydroxylation of aromatic amino acids)
     5. Components of
                               NAD, FAD, FMN and coenzyme A
        coenzymes
                               UDP-glucose (glycogen); CDP-choline
     6. Activated
                               (phospholipids); SAM (methylation); PAPS
        intermediates
                               (sulfation)
                               ATP (negative effector of PFK-1); AMP (positive
     7. Allosteric effectors   effector of phosphorylase b); dATP (negative
                               effector of ribonucleotide reductase)
overview                                                                         9
Nucleotide Metabolism Overview




                                 10
Nucleotide Synthesis: De Novo Pathway




 De Novo Pathway



                                        11
Nucleotide Synthesis: Salvage Pathway




central                                   12
PRPP: Central Metabolite
   5-phospho-D-ribosyl-1-pyrophosphate (PRPP) is
    an intermediate in both the de novo and salvage
    synthesis of nucleotides
   synthesized from ribose-5-phosphate
       from pentose phosphate pathway (HMP)
       phosphorolysis of nucleosides by nucleoside
        phosphorylase




                                                      13
PRPP Synthesis
       formed through the
        action of PRPP
        synthetase, which
        activates carbon 1 of
        ribose-5-phosphate by
        transferring to it the
        pyrophosphate moiety
        of ATP




                                 14
Reactions Requiring PRPP:
   de novo purine nucleotide synthesis:
    PRPP + glutamine  5-phosphoribosylamine + glutamate + PPi
   salvage of purine bases:
    PRPP + hypoxanthine (guanine)  IMP(GMP) + PPi
             PRPP + adenine  AMP + PPi
   de novo pyrimidine nucleotide synthesis:
                PRPP + orotate  OMP + PPi
   salvage of pyrimidine bases
                 PRPP + uracil  UMP + PPi
   NAD+ synthesis
                                                                  15
Synthesis of Nucleotide from PRPP
    PRPP is converted to a nucleotide by addition of
     a base
    reaction is reversible, but it proceeds almost
     exclusively to the right
    PPi product is readily cleaved by
     pyrophosphatases

                                              Guanine
                      + Guanine                    + PPi




purine metabolism                                       16
Purine Metabolism



                                     guanosine

     synthesis | degradation | clinical disorders
Purine
Nucleotide
Synthesis:
De Novo
Pathway




             18
Purine Nucleotide Synthesis: De Novo Pathway
   purine ring: utilizes amino acids (glutamine,
    glycine, aspartate) as carbon and nitrogen
    donors, tetrahydrofolate as a one-carbon donor,
    and CO2 as a carbon donor




                                                      19
Purine Nucleotide Synthesis: De Novo Pathway
   consists of 10 metabolic steps 
    inosine 5’-monophosphate (IMP)
   IMP – first ribonucleotide formed; precursor for
    both AMP and GMP
   utilizes PRPP as an important substrate
   ATP needed to drive several reactions of the
    pathway (6 moles of ATP)
   present in most cells, not all (e.g. RBCs)
   highly-regulated process

                                                       20
Purine Nucleotide Synthesis: De Novo Pathway
                             formation of 5-
                              phosphoribosylamine
                              (first step) by
                              glutamine PRPP
                              amidotransferase,
                              is the committed and
                              regulated step
                             the N-C bond formed
                              will become the N-
                              glycosidic bond of
                              the purine nucleotide

                              IMP
                                                  21
Purine Nucleotide Synthesis: De Novo Pathway
   IMP - common precursor for AMP and GMP




                                             22
Formation of GMP from IMP
   xanthosine 5‟-monophosphate (XMP) is formed by the
    oxidation of IMP catalyzed by IMP dehydrogenase
   guanosine 5‟monophosphate (GMP) is formed by the
    addition of an amino group from glutamine to XMP
    catalyzed by GMP synthetase




                                                         23
Formation of AMP from IMP
   adenylosuccinate is formed by the addition of aspartate
    to IMP catalyzed by adenylosuccinate synthetase
   adenosine 5‟-monophosphate (AMP) is formed by the
    cleavage of fumarate from adenylosuccinate by
    adenylosuccinase




                                                              24
Formation of GMP and AMP from IMP
     IMP  GMP : requires ATP as energy source
     IMP  AMP: requires GTP as energy source
     reciprocal relationship ensures that when there is sufficient ATP in
      the cell, GMP will be synthesized from IMP and when there is
      sufficient GTP, AMP will be synthesized from IMP




regulation                                                                   25
De Novo Purine Nucleotide Synthesis Regulation
                            formation of 5-
                             phosphoribosylamine
                             (PRA) is the committed
                             step in IMP formation
                            glutamine PRPP-
                             amidotransferase -
                             rate-limiting; regulated
                             allosterically by the
                             substrates and end
                             products of the pathway



                                                    26
De Novo Purine Nucleotide Synthesis Regulation




   glutamine PRPP-amidotransferase
   with  IMP, GMP or AMP: the enzyme is dimeric 
    inactive
   IMP, GMP and AMP: negative effectors
   with  PRPP: the enzyme is monomeric  active
    PRPP: positive effector

                                                      27
De Novo Purine Nucleotide Synthesis Regulation
                             Other points of regulation:
                              branch point of IMP to
                               GMP: IMP
                               Dehydrogenase
                               (IMPDH*) is rate-limiting
                               enzyme and is regulated
                               by GMP acting as a
                               competitive inhibitor of
                               IMDPH
                              branch point of IMP to
           *   **              AMP: adenylosuccinate
                               synthetase** is rate
                               limiting in conversion of
                               IMP to AMP, with AMP
                               acting as competitive
                               inhibitor

salvage                                                    28
Purine Nucleotide Synthesis: Salvage Pathway




   two specific enzyme systems (phosphoribosyl
    transferases) catalyze the transfer of the ribose
    phosphate from PRPP to free purine bases
                                                        29
Purine Nucleotide Synthesis: Salvage Pathway
                   Hypoxanthine-guanine
                     phosphoribosyl
                     transferase (HGPRTase)
                    catalyzes the formation of
                     nucleotides from either
                     hypoxanthine or guanine
                    hypoxanthine and guanine
                     for salvage arise from
                     degradation of purine
                     nucleotides
                    IMP and GMP are
                     competitive inhibitors of
                     PRPP for HGPRTase

                                                  30
Purine Nucleotide Synthesis: Salvage Pathway
                        Adenine
                          phosphoribosyl
                          transferase
                          (APRTase)
                         catalyzes the formation
                          of AMP from adenine
                         AMP is a competitive
                          inhibitor of PRPP for
                          APRTase


effects                                             31
Effects of Salvage on De No Synthesis Pathway
     salvage pathway synthesis of purine nucleotides
      affectively decreases the de novo pathway at the PRPP
      amidotransferase step:
       PRPP is consumed  decreasing the rate of

         formation of 5-phosphoribosylamine (rate limiting step
         of de novo pathway)
       AMP, IMP and GMP serve as feedback inhibitors at
         this step
     salvage reactions conserve energy and permit cells to
      form nucleotides from free nucleobases or nucleosides
     helpful in cells without glutamine PRPP
      amidotransferase (e.g., RBCs)
interconversions                                                  32
Purine Nucleotide Interconversions




     occur by indirect steps; no direct one-step
      pathway for conversion of GMP to AMP or AMP
      to GMP
     AMP or GMP is converted to IMP
purine degradation                                  33
Purine
Nucleotide
Degradation
    degradation of
     purine
     nucleotides,
     nucleosides and
     nucleobases
     follow a common
     pathway that
     leads to the
     formation of uric
     acid

                         34
adenine nucleotides
      hypoxanthine

     guanine nucleotides
      xanthine

UA                         35
Uric Acid Formation
    hypoxanthine and xanthine -
     oxidized by xanthine
     oxidoreductase (XOR), which
     has both dehydrogenase and
     oxidase activities
    xanthine dehydrogenase
     activity requires NAD+ as the
     electron acceptor
    xanthine oxidase activity
     utilizes molecular oxygen with
     the generation of hydrogen
     peroxide
    uric acid is the unique end
     product of purine nucleotide
     degradation in man
                                      36
Uric Acid




                 final oxidation product of
                  purine metabolism
                 a very weak organic acid that
                  is barely soluble in water and
                  insoluble in alcohol and ether
                 urates are its salts
d/o                                                37
Clinical Disorders
of Purine Metabolism
Hyperuricemia and Gout
                     Gout - manifestation of
                      acute or prolonged
                      hyperuricemia
                     precipitation of blood urate
                      as crystals of sodium urate
                      in the synovial fluid of
                      joints
                     inflammation painful
                      arthritis, which if untreated,
                      leads ultimately to severe
                      degeneration of the joints
                     causes
manifestations                                         39
Gout: Manifestations




causes                   40
Gout: Causes

                                       APRTase




   PRPP          PRPP
 synthetase      amido
              transferase



     1            2
  Elevated     Loss of
   levels     feedback      HGPRTase   Decreased
              inhibition                Levels
                               3


                                                   41
Gout: Causes   Elevated activity of PRPP
                 Synthetase (defect 1)
                insensitivity to feedback
                 inhibition by purine
                 nucleotides
                 PRPP   activity of
                 PRPP amidotransferase
                 reaction (rate-limiting
                 step in de novo purine
                 synthesis)
                 synthesis of purines
                 and uric acid

                                             42
Gout: Causes   Mutations in PRPP
                 amidotransferase
                 (defect 2)
                makes the enzyme
                 less sensitive to
                 feedback inhibition by
                 purine nucleotides
                 loss of control also
                 increases flux through
                 the rate-limiting step
                 synthesis of purines
                 and uric acid
                                      43
HGPRTase Deficiency
  Gout: Causes   
                     (defect 3)
                    HGPRTase reaction,
                     when active, consumes
                     PRPP
                    Decreased flux through
                     this reaction, when
                     HGPRTase is deficient 
                      steady state level of
                     PRPP;  IMP and GMP
                     intracellular activity of
                     PRPP amidotransferase
                       synthesis of purines
                     and uric acid
other causes                                       44
Gout: Other Causes
                       impaired uric acid
                        excretion (renal pathology)
                       increase rate of nucleic
                        acids degradation
                        (cancer chemotherapy /
                        radiotherapy)




tx                                                    45
Hyperuricemia and Gout: Treatment
                      dietary – decrease intake of
                       purine rich-foods
                      pharmacologic – Allopurinol
                        structural analog of
                         hypoxanthine that strongly
                         inhibits xanthine
                         oxidoreductase
                        inhibition causes
                         accumulation of
                         hypoxanthine and
                         xanthine, both of which
                         are more soluble and
                         more excretable than uric
                         acid

LNS                                               46
Lesch-Nyhan Syndrome (LNS / LND)
               a rare, inherited disorder caused
                by a deficiency of the enzyme
                hypoxanthine-guanine
                phosphoribosyltransferase
                (HGPRTase) (defect 3)
               increase in intracellular PRPP
                results in purine overproduction
               manifests as severe gouty arthritis
                and some neurologic
                manifestations: behavioral
                disorders, learning disability,
                hostile and aggressive behaviors
                towards self (self-mutilation)

                                                      47
Von Gierke’s Disease
   glucose-6-phosphatase deficiency - increased
    availability of G6P for the pentose phosphate
    pathway
     production of the PRPP precursor,
    ribose-5-phosphate   PRPP
    PRPP accelerates de novo purine synthesis
    leading to purine overproduction and
    hyperuricemia
   associated lactic acidosis elevates the renal
    threshold for urate, elevating total body urates

                                                   48
Hypouricemia
   associated with increased excretion of
    hypoxanthine and xanthine
   caused by deficiency of xanthine oxidoreductase
    due to a genetic defect or to severe liver
    damage
   patients may exhibit xanthinuria and xanthine
    lithiasis




                                                      49
Adenosine Deaminase (ADA) Deficiency
                          Severe Combined
                           Immunodeficiency Syndrome
                           (SCID) - both T-cells and B-cells
                           are deficient and dysfunctional
                           deoxyadenosine and
                           adenosine   deoxyATP which
“Bubble Boy Disease”       inhibit ribonucleotide reductase
                           resulting to inhibition of DNA
                           synthesis and less proliferation
                           of lymphocytes
                          recurrent or chronic infections,
                           failure to thrive, fatal before 18
                           years of age

                                                            50
What Would They Say (Paul Williams)
                   What would they say
                     If we up and ran away
                     From the roaring crowds
                     And the worn out city faces
                     Would they carry on and on
                     When they found out we were gone
                     Or would they let us go
                     Would they tag along
                     Or would they know to

                   What would they do
                     If they found out we were through
                     With all the little lies
                     And the downtown aggravations
                     That we'd traded them away
                     For a quiet country day
                     That we had hoped to share
                     Would they try to find out
                     Where we were or

                   What would they say
                     If we up and ran away
                     Ran away

                                                         51
Adenosine Deaminase (ADA) Deficiency




  DNA
              lymphocytes
 synthesis
                                       52
Purine Nucleoside Phosphorylase (PNP) Deficiency
                    less severe than ADA deficiency
                    associated with severe
                     deficiency of T-cells but
                     apparently normal B-cell
                     function
                    immune dysfunctions appear to
                     result from accumulation of
                     dGTP and dATP, which inhibit
                     ribonucleotide reductase and
                     thereby deplete cells of DNA
                     precursors

                                                   53
Purine Nucleoside Phosphorylase (PNP) Deficiency




               T-cell
              lymphocytes

                                                   54
Pyrimidine Metabolism



                                        uridine

     synthesis | degradation | clinical disorders
Pyrimidine Nucleotide
Synthesis: De Novo Pathway
            de novo synthesis of the
             pyrimidine ring in
             mammalian cells utilizes
             amino acids and
             nitrogen donors in
             addition to CO2.
            Uridine 5‟-
             monophosphate (UMP)
             is synthesized in a six-
             step metabolic pathway,
             requiring ATP hydrolysis

                                        56
Pyrimidine Nucleotide Synthesis: De Novo Pathway




   requires aspartate as carbon and nitrogen
    donor, glutamine as a nitrogen donor and CO2
    as a carbon donor
   five of the six reactions occur in the cytosol of
    the cell, while the other reaction occurs in the
    mitochondria
                                                        57
Pyrimidine Synthesis
   pyrimidine ring is formed
    first; ribose 5-phosphate is
    added with PRPP as the
    ribose 5-phosphate donor
   formation of cytosolic
    carbamoyl phosphate
    (CPS II) is the regulated step
   formation of N-
    carbamoylaspartate is the
    committed step in pyrimidine
    nucleotide synthesis

                                 58
Pyrimidine Synthesis
                    nucleotide kinases convert
                     UMP to UTP
                    UTP serves as substrate
                     for CTP synthetase




                                                  59
Formation of CTP from UTP
   CTP synthetase catalyzes the
    formation of CTP from UTP
    with glutamine as the amino
    group donor
   the product, CTP is a
    negative effector of CTP
    synthetase
   this regulation maintains an
    appropriate ratio of UTP and
    CTP for cellular function and
    RNA synthesis
                                    60
Pyrimidine Nucleotide
Synthesis Regulation
   regulation of pyrimidine
    nucleotide synthesis occurs
    at the CPS II step
   CPS II is inhibited by CTP, an
    end product of the pathway
   CPS II is activated by PRPP




salvage pathway                      61
Pyrimidine Nucleotide Synthesis: Salvage Pathway
    pyrimidine bases are „salvaged‟ to reform nucleotides by
     pyrimidine phosphoribosyl transferase:

      pyrimidine + PRPP  pyrimidine nucleoside 5’-monophosphate + PPi


    these reactions divert the pyrimidine bases from the
     degradative pathway to nucleotide formation
    as a pyrimidine base becomes available to cells, there
     are competing reactions that will result in either:
     a. degradation and excretion of the products
     b. reutilization of the bases for nucleotide synthesis


degradation                                                               62
Pyrimidine
Nucleotide
Degradation




          63
Degradation of
     Pyrimidine
     Nucleobases
   uracil and thymine
    are degraded by
    analogous reactions
   uracil is degraded to
     -alanine, NH4+ and
    CO2
   thymine is degraded
    to -aminoisobutyric
    acid, NH4+ and CO2.
                            64
Clinical Disorders of Pyrimidine Metabolism
 Orotic Acidurias
  Reye Syndrome: consequence of the inability of
   severely damaged mitochondria to utilize carbamoyl
   phosphate, which then becomes available for cytosolic
   overproduction of orotic acid
  deficiency of liver mitochondrial ornithine
   transcarbamoylase (an enzyme in the urea cycle) 
    excretion of orotic acid, uracil and uridine
          excess carbamoyl phosphate exits from the mitochondria to the
           cytosol, where it stimulates pyrimidine nucleotide biosynthesis




dntp                                                                         65
Deoxyribonucleotide
Metabolism


                              thymidine

             synthesis | interconversions
Deoxyribonucleotide Biosynthesis
   synthesis of deoxyribonucleoside triphosphates
    (dNTPs) is important in DNA synthesis and
    repair
   nucleoside 5’-diphosphate reductase
    (ribonucleotide reductase) – catalyzes the
    reaction in which ribonucleoside 5‟-diphosphates
    are reduced to 2‟-deoxyribonucleoside 5‟-
    diphosphates




                                                       67
Deoxyribonucleotide Biosynthesis




       nucleoside 5’-diphosphate reductase
        (ribonucleotide reductase) – catalyzes the
        reaction in which ribonucleoside 5‟-
        diphosphates are converted to 2‟-
        deoxyribonucleoside 5‟-diphosphates
regulation                                           68
Deoxyribonucleotide Biosynthesis: Regulation




   reaction is controlled by the amount of enzyme present in
    cells and by a very finely-regulated allosteric control
    mechanism (NTPs)
   thioredoxin or glutaredoxin: involved in reduction at the
    2‟-position through oxidation of its sulfhydryl groups
   NADPH is used to regenerate free sulfhydryl groups on
    thioredoxin or glutaredoxin                                 69
Deoxyribonucleotide Biosynthesis: Regulation
   reduction of a particular substrate requires a specific
    nucleoside 5‟-triphosphate as a positive effector
                 Major Positive
    Substrate                       Major Negative Effector
                 Effector

       CDP              ATP         dATP, dGTP, dTTP

       UDP              ATP         dATP, dGTP, dTTP

       ADP             dGTP         dATP

       GDP             dTTP         dATP

                                                              70
Role of Ribonucleotide Reductase in DNA Synthesis
   ribonucleotide reductase (1) catalyzes the rate-limiting reactions in
    which 2‟-deoxyribonucleoside 5‟-triphosphates are synthesized de
    novo for DNA replication
   inhibitors of ribonucleotide reductase are potent inhibitors
    of DNA synthesis and, hence, of cell replication




                                                                            71
Deoxythymidylate
Biosynthesis
   thymidylate synthase
    catalyzes the transfer of a
    one-carbon unit from
    N5,N10-methyleneH4folate to
    dUMP and which is
    simultaneously reduced to a
    methyl group
   N5,N10-methyleneH4folate
    serves as a one-carbon
    donor and as a reducing
    agent
                                72
Deoxyribonucleotide Interconversions




                            dCTP and dTTP are major
                            positive and negative effectors
                            of the interconversions and
                            salvage of
                            deoxyribonucleosides
Rx                                                            73
Pharmacologic Agents
that Interfere with
Nucleotide Metabolism

                              AZT (Zidovudine)

    antimetabolites | antifolates | glutamine
      antagonists | antivirals | other agents
Pharmacologic Agents
                     purine and pyrimidine
                      nucleotides: critical for normal
                      cell function, maintenance and
                      replication
                     compounds may be specific
                      inhibitors of enzymes involved
                      in nucleotide synthesis, inter-
                      conversions or degradation
                     antimetabolites, antifolates.
                      glutamine antagonists, other
                      agents

antimetabolites                                          75
Antimetabolites
   structural analogs of purine and pyrimidine
    bases or nucleosides that interfere with very
    specific metabolic reactions
       6-Mercaptopurine (6-MP)
       5-Fluorouracil (Fura or 5-FU)
       Cytosine Arabinoside (AraC)




                                                    76
Antimetabolites:   6-Mercaptopurine (6-MP)
                       useful antitumor drug in humans
                       utilizing PRPP and HGPRTase,
                        6-mercaptopurine ribonucleoside 5‟-
                        monophosphate is formed in cells
                        and serves as a negative effector of
                        PRPP-amidotransferase
                       this nucleotide also act as an
                        inhibitor of the conversion of IMP to
                        GMP at the IMP-dehydrogenase step
                        and IMP to AMP at the
                        adenylosuccinate synthetase step


                                                                77
Antimetabolites:   5-Fluorouracil (5-FU)
                       analog of uracil
                       converted to the active metabolite 5-
                        fluorouridine 5‟-triphosphate (FUTP)
                        and 5-fluoro-2‟-deoxyuridine 5‟-
                        monophosphate (FdUMP).
                       FUTP is efficiently incorporated into
                        RNA  inhibits its maturation
                       FdUMP is a potent and specific
                        irreversible inhibitor of thymidylate
                        synthase, resulting in the inhibition of
                        dTMP synthesis and leads to
                        “thymineless death” for cells
                                                                   78
Antimetabolites: Cytosine   Arabinoside (AraC)
                     treatment of several forms of
                      cancer (leukemias)
                     metabolized to cytosine
                      arabinoside 5‟-triphosphate
                      (araCTP) to exert its cytotoxic
                      effects
                     araCTP competes with dCTP in
                      the DNA polymerase reaction
                      and araCMP is incorporated into
                      DNA, which inhibits the
                      synthesis of the growing strand

antifolates                                             79
Antifolates
                 folate analogs interfere with
                  metabolic steps in which
                  tetrahydrofolate is involved as
                  either as a substrate or product
                     purine de novo synthesis
                     thymidylate synthase
                      (dUMP  dTMP)




                                                     80
Antifolates:   Methotrexate (MTX)




   synthetic analog of folic acid
       amino group at C4 instead of OH
       methyl group at N10 instead of an H
                                              81
Antifolates:
Methotrexate (MTX)
   interferes with the
    formation of H2folate and
    H4folate from folate by
    specifically inhibiting
    H2folate reductase
    (DHFR).




                                82
Antifolates:   Methotrexate (MTX)
                                           cells would be
                                            incapable of de
                                            novo synthesis of
                                            purine
                                            nucleotides or
                                            thymidylate
                                            synthesis due to
                                            depletion of
                                            H4folate pools
                                            lowering of
                                            ribonucleoside 5‟-
                                            triphosphate and
                                            2‟-deoxyribo-
                                            nucleoside 5‟-
                                            triphosphate
                  “thymineless death”       intracellular pools
GA                                                            83
Glutamine Antagonists
          many reactions in the cells utilize
           glutamine as the amino group donor
          amidation reactions are critical:
              de novo synthesis of purine nucleotide
               (N3 and N9)
              synthesis of GMP from IMP
              formation of cytosolic carbamoyl
               phosphate
              synthesis of CTP from UTP
              synthesis of NAD+.
          compounds that inhibit these
           reactions are referred to as glutamine
           antagonists
                                                        84
Glutamine Antagonists:
O-diazoacetyl-L-serine (Azaserine)
6-diazo-5-oxo-L-norleucine (DON)
                             effective inhibitors of enzymes
                              that utilize glutamine as the
                              amino donor
                             addition of glutamine alone will
                              not reverse the effects of these
                              two drugs
                             many metabolites (guanine,
                              cytosine, hypoxanthine/adenine
                              and nicotinamide): needed to
                              bypass the many sites blocked
                              by these glutamine antagonists
(DON)         Azaserine       AV                             85
Antivirals
   enzymes of nucleotide synthesis have been
    widely studied as target sites for the action of
    antiviral or antimicrobial drugs
   purine and pyrimidine analogs can target these
    enzymes and thus control or help treat certain
    viral diseases




                                                       86
Antivirals:   Acylguanosine (Acyclovir)
                          purine analog, commonly used in
                           the treatment of herpesvirus (HSV)
                          converted to the monophosphate
                           by a specific HSV-thymidine kinase
                           present only in virally-infected cells
                          acycloguanosine monophosphate
                           is phosphorylated to the di- and
                           triphosphate forms
                          acycloguanosine triphosphate
                           serves as a substrate for the HSV-
                           specific DNA polymerase 
                           incorporated in the growing DNA
                           chain, causing chain termination

                                                                    87
Antivirals:   3’-azido-3’deoxythymidine (AZT)
                           pyrimidine analog,
                            commonly used in the
                            treatment of human
                            immunodeficiency virus
                            (HIV) infections
                           phosphorylated by cellular
                            kinases to AZT-
                            triphosphate, which blocks
                            HIV replication by inhibiting
                            HIV-DNA polymerase

                       OA                                   88
Other Agents:   Hydroxyurea
                        limited use in cancer treatment;
                         also used in the treatment of
                         sickle cell anemia
                        inhibits ribonucleotide reductase
                         activity by destroying the tyrosyl
                         free radical on the small subunit
                         of the enzyme
                        inhibition of the reduction of CDP,
                         UDP, GDP and ADP to the
                         corresponding 2‟-
                         deoxyribonucleoside 5‟-
                         diphosphates  termination of
                         DNA replication
                                                               89
Other Agents:   Tiazofurin
                            converted by cellular
                             enzymes to the NAD+
                             analog tiazofurin adenine
                             dinucleotide (TAD)
                            TAD inhibits IMP
                             dehydrogenase, the
                             rate-limiting enzyme in
                             GTP synthesis
                             GTP   dGTP


                                                         90
Thank you very much!



                                  adenosine triphosphate

   Noel Martin S. Bautista, MD, MBAH
   Department of Biochemistry, Molecular Biology and Nutrition

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What would They Say

  • 1.
  • 2. A Christmas Prayer by Robert Louis Stevenson Loving God, help us to remember the birth of Jesus that we may share in the songs of the angels, the gladness of the shepherds, and the worship of the wise men. Close the door of hate and open the door of love all over the world. Let kindness come with every gift and good desires with every greeting. Deliver us from evil by the blessing which Christ brings. May our minds be filled with grateful thoughts and our hearts with forgiveness, for Jesus‟ sake. Amen.
  • 3. Nucleotide Metabolism adenosine triphosphate Noel Martin S. Bautista, MD, MBAH Department of Biochemistry, Molecular Biology and Nutrition
  • 4. Introduction  Overview of nucleotide metabolism and biological functions of nucleotides  Metabolism of purine nucleotides  Clinical disorders of purine metabolism  Metabolism of pyrimidine nucleotides  Clinical disorders of pyrimidine metabolism  Metabolism of deoxyribonucleotides  Different pharmacologic agents that interfere with nucleotide metabolism 4
  • 6. base + sugar = Nucleosides  have either -D-ribose or -D-deoxyribose in an N-glycosidic linkage between C-1 of the sugar and N-9 (purine) or N-1 (pyrimidine) Ribonucleosides 6
  • 7. base + sugar = Nucleosides  have either -D-ribose or -D-deoxyribose in an N-glycosidic linkage between C-1 of the sugar and N-9 (purine) or N-1 (pyrimidine) Deoxyribonucleosides 7
  • 8. Nucleoside + PO4 = Nucleotides  have one or more phosphate groups esterified to the sugar Deoxyribonucleotides Ribonucleotides 8
  • 9. Metabolic Functions of Nucleotides Function Selected Examples 1. Energy metabolism ATP (muscle contraction, etc) 2. Monomeric units of NTPs and dNTPs (substrates for RNA and DNA) nucleic acids Adenosine (coronary blood flow); ADP (platelet 3. Physiological aggregation); cAMP and cGMP (second mediators messengers) GTP (mRNA capping); tetrahydrobiopterin 4. Precursor function (hydroxylation of aromatic amino acids) 5. Components of NAD, FAD, FMN and coenzyme A coenzymes UDP-glucose (glycogen); CDP-choline 6. Activated (phospholipids); SAM (methylation); PAPS intermediates (sulfation) ATP (negative effector of PFK-1); AMP (positive 7. Allosteric effectors effector of phosphorylase b); dATP (negative effector of ribonucleotide reductase) overview 9
  • 11. Nucleotide Synthesis: De Novo Pathway De Novo Pathway 11
  • 12. Nucleotide Synthesis: Salvage Pathway central 12
  • 13. PRPP: Central Metabolite  5-phospho-D-ribosyl-1-pyrophosphate (PRPP) is an intermediate in both the de novo and salvage synthesis of nucleotides  synthesized from ribose-5-phosphate  from pentose phosphate pathway (HMP)  phosphorolysis of nucleosides by nucleoside phosphorylase 13
  • 14. PRPP Synthesis  formed through the action of PRPP synthetase, which activates carbon 1 of ribose-5-phosphate by transferring to it the pyrophosphate moiety of ATP 14
  • 15. Reactions Requiring PRPP:  de novo purine nucleotide synthesis: PRPP + glutamine  5-phosphoribosylamine + glutamate + PPi  salvage of purine bases: PRPP + hypoxanthine (guanine)  IMP(GMP) + PPi PRPP + adenine  AMP + PPi  de novo pyrimidine nucleotide synthesis: PRPP + orotate  OMP + PPi  salvage of pyrimidine bases PRPP + uracil  UMP + PPi  NAD+ synthesis 15
  • 16. Synthesis of Nucleotide from PRPP  PRPP is converted to a nucleotide by addition of a base  reaction is reversible, but it proceeds almost exclusively to the right  PPi product is readily cleaved by pyrophosphatases Guanine + Guanine + PPi purine metabolism 16
  • 17. Purine Metabolism guanosine synthesis | degradation | clinical disorders
  • 19. Purine Nucleotide Synthesis: De Novo Pathway  purine ring: utilizes amino acids (glutamine, glycine, aspartate) as carbon and nitrogen donors, tetrahydrofolate as a one-carbon donor, and CO2 as a carbon donor 19
  • 20. Purine Nucleotide Synthesis: De Novo Pathway  consists of 10 metabolic steps  inosine 5’-monophosphate (IMP)  IMP – first ribonucleotide formed; precursor for both AMP and GMP  utilizes PRPP as an important substrate  ATP needed to drive several reactions of the pathway (6 moles of ATP)  present in most cells, not all (e.g. RBCs)  highly-regulated process 20
  • 21. Purine Nucleotide Synthesis: De Novo Pathway  formation of 5- phosphoribosylamine (first step) by glutamine PRPP amidotransferase, is the committed and regulated step  the N-C bond formed will become the N- glycosidic bond of the purine nucleotide  IMP 21
  • 22. Purine Nucleotide Synthesis: De Novo Pathway  IMP - common precursor for AMP and GMP 22
  • 23. Formation of GMP from IMP  xanthosine 5‟-monophosphate (XMP) is formed by the oxidation of IMP catalyzed by IMP dehydrogenase  guanosine 5‟monophosphate (GMP) is formed by the addition of an amino group from glutamine to XMP catalyzed by GMP synthetase 23
  • 24. Formation of AMP from IMP  adenylosuccinate is formed by the addition of aspartate to IMP catalyzed by adenylosuccinate synthetase  adenosine 5‟-monophosphate (AMP) is formed by the cleavage of fumarate from adenylosuccinate by adenylosuccinase 24
  • 25. Formation of GMP and AMP from IMP  IMP  GMP : requires ATP as energy source  IMP  AMP: requires GTP as energy source  reciprocal relationship ensures that when there is sufficient ATP in the cell, GMP will be synthesized from IMP and when there is sufficient GTP, AMP will be synthesized from IMP regulation 25
  • 26. De Novo Purine Nucleotide Synthesis Regulation  formation of 5- phosphoribosylamine (PRA) is the committed step in IMP formation  glutamine PRPP- amidotransferase - rate-limiting; regulated allosterically by the substrates and end products of the pathway 26
  • 27. De Novo Purine Nucleotide Synthesis Regulation  glutamine PRPP-amidotransferase  with  IMP, GMP or AMP: the enzyme is dimeric  inactive  IMP, GMP and AMP: negative effectors  with  PRPP: the enzyme is monomeric  active  PRPP: positive effector 27
  • 28. De Novo Purine Nucleotide Synthesis Regulation Other points of regulation:  branch point of IMP to GMP: IMP Dehydrogenase (IMPDH*) is rate-limiting enzyme and is regulated by GMP acting as a competitive inhibitor of IMDPH  branch point of IMP to * ** AMP: adenylosuccinate synthetase** is rate limiting in conversion of IMP to AMP, with AMP acting as competitive inhibitor salvage 28
  • 29. Purine Nucleotide Synthesis: Salvage Pathway  two specific enzyme systems (phosphoribosyl transferases) catalyze the transfer of the ribose phosphate from PRPP to free purine bases 29
  • 30. Purine Nucleotide Synthesis: Salvage Pathway Hypoxanthine-guanine phosphoribosyl transferase (HGPRTase)  catalyzes the formation of nucleotides from either hypoxanthine or guanine  hypoxanthine and guanine for salvage arise from degradation of purine nucleotides  IMP and GMP are competitive inhibitors of PRPP for HGPRTase 30
  • 31. Purine Nucleotide Synthesis: Salvage Pathway Adenine phosphoribosyl transferase (APRTase)  catalyzes the formation of AMP from adenine  AMP is a competitive inhibitor of PRPP for APRTase effects 31
  • 32. Effects of Salvage on De No Synthesis Pathway  salvage pathway synthesis of purine nucleotides affectively decreases the de novo pathway at the PRPP amidotransferase step:  PRPP is consumed  decreasing the rate of formation of 5-phosphoribosylamine (rate limiting step of de novo pathway)  AMP, IMP and GMP serve as feedback inhibitors at this step  salvage reactions conserve energy and permit cells to form nucleotides from free nucleobases or nucleosides  helpful in cells without glutamine PRPP amidotransferase (e.g., RBCs) interconversions 32
  • 33. Purine Nucleotide Interconversions  occur by indirect steps; no direct one-step pathway for conversion of GMP to AMP or AMP to GMP  AMP or GMP is converted to IMP purine degradation 33
  • 34. Purine Nucleotide Degradation  degradation of purine nucleotides, nucleosides and nucleobases follow a common pathway that leads to the formation of uric acid 34
  • 35. adenine nucleotides  hypoxanthine guanine nucleotides  xanthine UA 35
  • 36. Uric Acid Formation  hypoxanthine and xanthine - oxidized by xanthine oxidoreductase (XOR), which has both dehydrogenase and oxidase activities  xanthine dehydrogenase activity requires NAD+ as the electron acceptor  xanthine oxidase activity utilizes molecular oxygen with the generation of hydrogen peroxide  uric acid is the unique end product of purine nucleotide degradation in man 36
  • 37. Uric Acid  final oxidation product of purine metabolism  a very weak organic acid that is barely soluble in water and insoluble in alcohol and ether  urates are its salts d/o 37
  • 39. Hyperuricemia and Gout  Gout - manifestation of acute or prolonged hyperuricemia  precipitation of blood urate as crystals of sodium urate in the synovial fluid of joints  inflammation painful arthritis, which if untreated, leads ultimately to severe degeneration of the joints  causes manifestations 39
  • 41. Gout: Causes APRTase PRPP PRPP synthetase amido transferase 1 2 Elevated Loss of levels feedback HGPRTase Decreased inhibition Levels 3 41
  • 42. Gout: Causes Elevated activity of PRPP Synthetase (defect 1)  insensitivity to feedback inhibition by purine nucleotides   PRPP   activity of PRPP amidotransferase reaction (rate-limiting step in de novo purine synthesis)   synthesis of purines and uric acid 42
  • 43. Gout: Causes Mutations in PRPP amidotransferase (defect 2)  makes the enzyme less sensitive to feedback inhibition by purine nucleotides   loss of control also increases flux through the rate-limiting step   synthesis of purines and uric acid 43
  • 44. HGPRTase Deficiency Gout: Causes  (defect 3)  HGPRTase reaction, when active, consumes PRPP  Decreased flux through this reaction, when HGPRTase is deficient   steady state level of PRPP;  IMP and GMP   intracellular activity of PRPP amidotransferase   synthesis of purines and uric acid other causes 44
  • 45. Gout: Other Causes  impaired uric acid excretion (renal pathology)  increase rate of nucleic acids degradation (cancer chemotherapy / radiotherapy) tx 45
  • 46. Hyperuricemia and Gout: Treatment  dietary – decrease intake of purine rich-foods  pharmacologic – Allopurinol  structural analog of hypoxanthine that strongly inhibits xanthine oxidoreductase  inhibition causes accumulation of hypoxanthine and xanthine, both of which are more soluble and more excretable than uric acid LNS 46
  • 47. Lesch-Nyhan Syndrome (LNS / LND)  a rare, inherited disorder caused by a deficiency of the enzyme hypoxanthine-guanine phosphoribosyltransferase (HGPRTase) (defect 3)  increase in intracellular PRPP results in purine overproduction  manifests as severe gouty arthritis and some neurologic manifestations: behavioral disorders, learning disability, hostile and aggressive behaviors towards self (self-mutilation) 47
  • 48. Von Gierke’s Disease  glucose-6-phosphatase deficiency - increased availability of G6P for the pentose phosphate pathway    production of the PRPP precursor, ribose-5-phosphate   PRPP   PRPP accelerates de novo purine synthesis leading to purine overproduction and hyperuricemia  associated lactic acidosis elevates the renal threshold for urate, elevating total body urates 48
  • 49. Hypouricemia  associated with increased excretion of hypoxanthine and xanthine  caused by deficiency of xanthine oxidoreductase due to a genetic defect or to severe liver damage  patients may exhibit xanthinuria and xanthine lithiasis 49
  • 50. Adenosine Deaminase (ADA) Deficiency  Severe Combined Immunodeficiency Syndrome (SCID) - both T-cells and B-cells are deficient and dysfunctional   deoxyadenosine and adenosine   deoxyATP which “Bubble Boy Disease” inhibit ribonucleotide reductase resulting to inhibition of DNA synthesis and less proliferation of lymphocytes  recurrent or chronic infections, failure to thrive, fatal before 18 years of age 50
  • 51. What Would They Say (Paul Williams) What would they say If we up and ran away From the roaring crowds And the worn out city faces Would they carry on and on When they found out we were gone Or would they let us go Would they tag along Or would they know to What would they do If they found out we were through With all the little lies And the downtown aggravations That we'd traded them away For a quiet country day That we had hoped to share Would they try to find out Where we were or What would they say If we up and ran away Ran away 51
  • 52. Adenosine Deaminase (ADA) Deficiency  DNA  lymphocytes synthesis 52
  • 53. Purine Nucleoside Phosphorylase (PNP) Deficiency  less severe than ADA deficiency  associated with severe deficiency of T-cells but apparently normal B-cell function  immune dysfunctions appear to result from accumulation of dGTP and dATP, which inhibit ribonucleotide reductase and thereby deplete cells of DNA precursors 53
  • 54. Purine Nucleoside Phosphorylase (PNP) Deficiency  T-cell lymphocytes 54
  • 55. Pyrimidine Metabolism uridine synthesis | degradation | clinical disorders
  • 56. Pyrimidine Nucleotide Synthesis: De Novo Pathway  de novo synthesis of the pyrimidine ring in mammalian cells utilizes amino acids and nitrogen donors in addition to CO2.  Uridine 5‟- monophosphate (UMP) is synthesized in a six- step metabolic pathway, requiring ATP hydrolysis 56
  • 57. Pyrimidine Nucleotide Synthesis: De Novo Pathway  requires aspartate as carbon and nitrogen donor, glutamine as a nitrogen donor and CO2 as a carbon donor  five of the six reactions occur in the cytosol of the cell, while the other reaction occurs in the mitochondria 57
  • 58. Pyrimidine Synthesis  pyrimidine ring is formed first; ribose 5-phosphate is added with PRPP as the ribose 5-phosphate donor  formation of cytosolic carbamoyl phosphate (CPS II) is the regulated step  formation of N- carbamoylaspartate is the committed step in pyrimidine nucleotide synthesis 58
  • 59. Pyrimidine Synthesis  nucleotide kinases convert UMP to UTP  UTP serves as substrate for CTP synthetase 59
  • 60. Formation of CTP from UTP  CTP synthetase catalyzes the formation of CTP from UTP with glutamine as the amino group donor  the product, CTP is a negative effector of CTP synthetase  this regulation maintains an appropriate ratio of UTP and CTP for cellular function and RNA synthesis 60
  • 61. Pyrimidine Nucleotide Synthesis Regulation  regulation of pyrimidine nucleotide synthesis occurs at the CPS II step  CPS II is inhibited by CTP, an end product of the pathway  CPS II is activated by PRPP salvage pathway 61
  • 62. Pyrimidine Nucleotide Synthesis: Salvage Pathway  pyrimidine bases are „salvaged‟ to reform nucleotides by pyrimidine phosphoribosyl transferase: pyrimidine + PRPP  pyrimidine nucleoside 5’-monophosphate + PPi  these reactions divert the pyrimidine bases from the degradative pathway to nucleotide formation  as a pyrimidine base becomes available to cells, there are competing reactions that will result in either: a. degradation and excretion of the products b. reutilization of the bases for nucleotide synthesis degradation 62
  • 64. Degradation of Pyrimidine Nucleobases  uracil and thymine are degraded by analogous reactions  uracil is degraded to -alanine, NH4+ and CO2  thymine is degraded to -aminoisobutyric acid, NH4+ and CO2. 64
  • 65. Clinical Disorders of Pyrimidine Metabolism Orotic Acidurias  Reye Syndrome: consequence of the inability of severely damaged mitochondria to utilize carbamoyl phosphate, which then becomes available for cytosolic overproduction of orotic acid  deficiency of liver mitochondrial ornithine transcarbamoylase (an enzyme in the urea cycle)   excretion of orotic acid, uracil and uridine  excess carbamoyl phosphate exits from the mitochondria to the cytosol, where it stimulates pyrimidine nucleotide biosynthesis dntp 65
  • 66. Deoxyribonucleotide Metabolism thymidine synthesis | interconversions
  • 67. Deoxyribonucleotide Biosynthesis  synthesis of deoxyribonucleoside triphosphates (dNTPs) is important in DNA synthesis and repair  nucleoside 5’-diphosphate reductase (ribonucleotide reductase) – catalyzes the reaction in which ribonucleoside 5‟-diphosphates are reduced to 2‟-deoxyribonucleoside 5‟- diphosphates 67
  • 68. Deoxyribonucleotide Biosynthesis  nucleoside 5’-diphosphate reductase (ribonucleotide reductase) – catalyzes the reaction in which ribonucleoside 5‟- diphosphates are converted to 2‟- deoxyribonucleoside 5‟-diphosphates regulation 68
  • 69. Deoxyribonucleotide Biosynthesis: Regulation  reaction is controlled by the amount of enzyme present in cells and by a very finely-regulated allosteric control mechanism (NTPs)  thioredoxin or glutaredoxin: involved in reduction at the 2‟-position through oxidation of its sulfhydryl groups  NADPH is used to regenerate free sulfhydryl groups on thioredoxin or glutaredoxin 69
  • 70. Deoxyribonucleotide Biosynthesis: Regulation  reduction of a particular substrate requires a specific nucleoside 5‟-triphosphate as a positive effector Major Positive Substrate Major Negative Effector Effector CDP ATP dATP, dGTP, dTTP UDP ATP dATP, dGTP, dTTP ADP dGTP dATP GDP dTTP dATP 70
  • 71. Role of Ribonucleotide Reductase in DNA Synthesis  ribonucleotide reductase (1) catalyzes the rate-limiting reactions in which 2‟-deoxyribonucleoside 5‟-triphosphates are synthesized de novo for DNA replication  inhibitors of ribonucleotide reductase are potent inhibitors of DNA synthesis and, hence, of cell replication 71
  • 72. Deoxythymidylate Biosynthesis  thymidylate synthase catalyzes the transfer of a one-carbon unit from N5,N10-methyleneH4folate to dUMP and which is simultaneously reduced to a methyl group  N5,N10-methyleneH4folate serves as a one-carbon donor and as a reducing agent  72
  • 73. Deoxyribonucleotide Interconversions dCTP and dTTP are major positive and negative effectors of the interconversions and salvage of deoxyribonucleosides Rx 73
  • 74. Pharmacologic Agents that Interfere with Nucleotide Metabolism AZT (Zidovudine) antimetabolites | antifolates | glutamine antagonists | antivirals | other agents
  • 75. Pharmacologic Agents  purine and pyrimidine nucleotides: critical for normal cell function, maintenance and replication  compounds may be specific inhibitors of enzymes involved in nucleotide synthesis, inter- conversions or degradation  antimetabolites, antifolates. glutamine antagonists, other agents antimetabolites 75
  • 76. Antimetabolites  structural analogs of purine and pyrimidine bases or nucleosides that interfere with very specific metabolic reactions  6-Mercaptopurine (6-MP)  5-Fluorouracil (Fura or 5-FU)  Cytosine Arabinoside (AraC) 76
  • 77. Antimetabolites: 6-Mercaptopurine (6-MP)  useful antitumor drug in humans  utilizing PRPP and HGPRTase, 6-mercaptopurine ribonucleoside 5‟- monophosphate is formed in cells and serves as a negative effector of PRPP-amidotransferase  this nucleotide also act as an inhibitor of the conversion of IMP to GMP at the IMP-dehydrogenase step and IMP to AMP at the adenylosuccinate synthetase step 77
  • 78. Antimetabolites: 5-Fluorouracil (5-FU)  analog of uracil  converted to the active metabolite 5- fluorouridine 5‟-triphosphate (FUTP) and 5-fluoro-2‟-deoxyuridine 5‟- monophosphate (FdUMP).  FUTP is efficiently incorporated into RNA  inhibits its maturation  FdUMP is a potent and specific irreversible inhibitor of thymidylate synthase, resulting in the inhibition of dTMP synthesis and leads to “thymineless death” for cells 78
  • 79. Antimetabolites: Cytosine Arabinoside (AraC)  treatment of several forms of cancer (leukemias)  metabolized to cytosine arabinoside 5‟-triphosphate (araCTP) to exert its cytotoxic effects  araCTP competes with dCTP in the DNA polymerase reaction and araCMP is incorporated into DNA, which inhibits the synthesis of the growing strand antifolates 79
  • 80. Antifolates  folate analogs interfere with metabolic steps in which tetrahydrofolate is involved as either as a substrate or product  purine de novo synthesis  thymidylate synthase (dUMP  dTMP) 80
  • 81. Antifolates: Methotrexate (MTX)  synthetic analog of folic acid  amino group at C4 instead of OH  methyl group at N10 instead of an H 81
  • 82. Antifolates: Methotrexate (MTX)  interferes with the formation of H2folate and H4folate from folate by specifically inhibiting H2folate reductase (DHFR). 82
  • 83. Antifolates: Methotrexate (MTX)  cells would be incapable of de novo synthesis of purine nucleotides or thymidylate synthesis due to depletion of H4folate pools   lowering of ribonucleoside 5‟- triphosphate and 2‟-deoxyribo- nucleoside 5‟- triphosphate “thymineless death” intracellular pools GA 83
  • 84. Glutamine Antagonists  many reactions in the cells utilize glutamine as the amino group donor  amidation reactions are critical:  de novo synthesis of purine nucleotide (N3 and N9)  synthesis of GMP from IMP  formation of cytosolic carbamoyl phosphate  synthesis of CTP from UTP  synthesis of NAD+.  compounds that inhibit these reactions are referred to as glutamine antagonists 84
  • 85. Glutamine Antagonists: O-diazoacetyl-L-serine (Azaserine) 6-diazo-5-oxo-L-norleucine (DON)  effective inhibitors of enzymes that utilize glutamine as the amino donor  addition of glutamine alone will not reverse the effects of these two drugs  many metabolites (guanine, cytosine, hypoxanthine/adenine and nicotinamide): needed to bypass the many sites blocked by these glutamine antagonists (DON) Azaserine AV 85
  • 86. Antivirals  enzymes of nucleotide synthesis have been widely studied as target sites for the action of antiviral or antimicrobial drugs  purine and pyrimidine analogs can target these enzymes and thus control or help treat certain viral diseases 86
  • 87. Antivirals: Acylguanosine (Acyclovir)  purine analog, commonly used in the treatment of herpesvirus (HSV)  converted to the monophosphate by a specific HSV-thymidine kinase present only in virally-infected cells  acycloguanosine monophosphate is phosphorylated to the di- and triphosphate forms  acycloguanosine triphosphate serves as a substrate for the HSV- specific DNA polymerase  incorporated in the growing DNA chain, causing chain termination 87
  • 88. Antivirals: 3’-azido-3’deoxythymidine (AZT)  pyrimidine analog, commonly used in the treatment of human immunodeficiency virus (HIV) infections  phosphorylated by cellular kinases to AZT- triphosphate, which blocks HIV replication by inhibiting HIV-DNA polymerase OA 88
  • 89. Other Agents: Hydroxyurea  limited use in cancer treatment; also used in the treatment of sickle cell anemia  inhibits ribonucleotide reductase activity by destroying the tyrosyl free radical on the small subunit of the enzyme  inhibition of the reduction of CDP, UDP, GDP and ADP to the corresponding 2‟- deoxyribonucleoside 5‟- diphosphates  termination of DNA replication 89
  • 90. Other Agents: Tiazofurin  converted by cellular enzymes to the NAD+ analog tiazofurin adenine dinucleotide (TAD)  TAD inhibits IMP dehydrogenase, the rate-limiting enzyme in GTP synthesis   GTP   dGTP 90
  • 91. Thank you very much! adenosine triphosphate Noel Martin S. Bautista, MD, MBAH Department of Biochemistry, Molecular Biology and Nutrition