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Contents:
 Introduction
 Methods for measuring N2 fixation
 Nitrogen balance method
 Nitrogen difference method
 Ureides method
 𝟏𝟓 𝑵 isotope techniques
 Acetylene reduction assay
 Hydrogen evolution method
Introduction
 N2 gas are found 78.084%on atmosphere of earth.
 Nitrogen is an essential element for plant growth and development and a key issue of agriculture.
 N2 are found in molecular N2 (𝑵 ≡ 𝑵) form in soil.
 Dinitrogen is more stable, so we need of nitrogen fixation.
 Most studies indicate that nitrogen fertilizers contribute to resolving the challenge the world is facing,
feeding the human population.
 The Green revolution was accompanied by an enormous increase in the application of nitrogen fertilizer.
 Nitrogen fixation is a process by which nitrogen of the Earth's atmosphere is
converted into ammonia (NH3), nitrogen salts or other molecules available to
living organisms.
 Biological Nitrogen Fixation(BNF) is known to be a sustain agriculture and
increase soil fertility.
 Research on microorganisms and plants able to fix nitrogen contributes largely
to the production of bio fertilizers.
 Thus it is important to ensure that BNF research and development will take
into account the needs of farmers in the developing countries mainly.
Role of nitrogen in Plant
» Major substance in plants next to water
» Building blocks
» Constituent element of
»Chlorophyll
»Cytochromes
»Alkaloids
»Many vitamins
» Plays important role in metabolism, growth, reproduction and
heredity
Sources of Nitrogen
Atmospheric Nitrogen
– 78.084%of atmosphere.
– Plants cannot utilize this form.
– Some Bacteria, Blue Green Algae, leguminous plants.
Nitrates, Nitrites and Ammonia
– Nitrate is chief form.
Amino acids in the soil
– Many soil organisms use this form.
– Higher plants can also taken by higher plants.
Organic Nitrogenous compounds in insects
– Insectivorous plants.
Why measure 𝑵 𝟐 fixation?
 Ecological consideration require an understanding of the relative contribution of 𝑵 𝟐
fixing components to the N-cycle.
 Measurement of 𝑁2 fixation enable an investigator to evaluate the ability of
indigenous Rhizobium spp. to effectively nodulate newly introduced legumes.
 Development of sustainable farming systems.
 Understanding of the amount of 𝑵 𝟐fixed by legumes as influenced by soil
management or cultural practices allows development of efficient agricultural and
agroforesty production systems.
Methodsfor measuring 𝑵 𝟐 Fixation
 Estimate𝑁2 fixation as the net increase in total N of a plant –soil system
 N balance method.
 Separate plant N into the fraction taken up from the soil and the fraction derived from the N2 fixation
 N difference method,
 15N isotope techniques and
 ureide methods.
 Measure the activity of nitrogenase and the enzyme responsible for𝑁2fixation –
 Acetylene reduction and
 Hydrogen evolution methods.
Nitrogen balance method
 Principle behind these method:
 If all possible external inputs, except N2 fixation, and outflows of N can be accounted for
incremental changes in soil N quantified, a net positive N balance in the system under study may be
attributed to N2 fixation.
 Assumptions:
 Potential inputs of N that are difficult to measure, such as wet and dry deposition associated with
rainfall and dust, extraction of N from deep soil horizons or from the watertable, and 𝑁𝐻3
absorption by leaves, are small and insignificant compared with inputs via N2 fixation.
Advantages:
 In theory the method is simple. Any inputs of N in fertilisers or organic sources are
relatively easily quantified, as are amounts of N removed from the site in plant and
animal products.
 Potential limitations:
 Loss of N through NH3 volatilisation, denitrification, leaching losses, run off and
erosion can be substantial, and difficult to measure, of 𝑁2 fixation inputs.
 In pasture systems, spatial variability of both N inputs and N losses associated with
excreta from grazing animals can be difficult to quantify.
 Even small errors arising from soil sampling or analysis, or in measures of bulk
density, result in large discrepancies when estimating total soil N.
Nitrogen difference method
Principle:
 N difference compares total N of the𝑁2 fixing species with that of a
neighbouring non 𝑁2 fixing species, with the difference between the
two measures assumed to be due to 𝑁2 fixation.
Assumptions:
• The N accumulated by the non 𝑁2 fixing control is derived only from soil
N, and its N content represents the amount of soil mineral N available for
plant growth.
• The 𝑁2 fixing plants use the same amount of soil mineral N as the non 𝑁2
fixing control.
Advantages:
 It is a simple,low cost method that can be applied when facilities for only
dry matter determination and total N analyses are available.
Potential limitations:
 The method requires a non N2 fixing control to be included in the experimental design.
 Difference between N2 fixing and non N2 fixing plants in root morphology and rooting
depth can result in different capacities to use soil N.
 There may be errors in accurately quantifying total N accumulated by the𝑁2 fixing plants
and control plants.
Conclusions:
 The technique is likely to be most reliable under condition of low plant
available N and where there are large differences in N yield between
the𝑁2fixing plants and non𝑁2 fixing control.
Uredines method:
 Principle :
 In many tropical and subtropical legumes, the N-solute composition in xylem sap and stem
segments changes from one dominated by the ureidesallantion and allantoic acid in𝑁2 fixing
plants, to one dominated by nitrate and aminoacids in plants utilising soil N.
 The substantial differences in the principal forms of N transported in the xylem between
symbiotic and non symbiotic plants allow incoming fixed N and soil N to be distinguished.
 Assumptions:
 The N solute composition of xylem sap and stem segments reflects current N assimilation by
the legume.
 The abundance of ureides relative to other N solutes can be used as an indirect measure of the
percentage of legume N derived from the atmosphere i.e.,%Ndfa.
Advantages:
 The Procedure used to sample xylem sap and stem segments of field grown legumes
are not technically demanding.
 Ureides, nitrate and aminoacids in xylem sap and stem segments can be easily and
rapidly analysed using simple colorimetric assays in a testtube. There is no need for
expensive or sophisticated equipment.
 No special experimental design is required, so the method can be used for on farm
measurement of 𝑁2fixation.
 Many samples can be collected and analysed in a single day.
Potential limitations:
 Its use is restricted to ureide exporting legume species (e.g., Glycine, Vigna, Phaseolus,
Macroptilium).
 The method provides an indirect measure of %Ndfa, necessitating calibration against
another method, e.g.,15N isotope dilution.
 Different calibration may be needed during vegetative and reproductive stages of
development.
 The technique provides only a point in time estimate of the legumes symbiotic
dependence at, or shortly before, the time of sap sampling, so repeated sampling of
xylem composition and plant N may be required during a growing season.
Conclusions:
It is a versatile and useful technique that can be applied in glasshouse and
field experiments, or used in farmers field, to assess𝑁2 fixation by ureide
exporting tropical and subtropical legumes.
It can be provide estimate of𝑁2 fixation (%Ndfa and total 𝑁2fixed) for field
grown legumes similar to those from more sophisticated techniques.
15N isotope techniques:
Principle:
 The roots of intact or detached plants are placed in a
chamber with an atmosphere enriched in 15N.The amount
of 15N in the plant at the end of the incubation period is a
direct measure of the rate 𝑁2 fixation.
Advantages:
 It is a direct measure of 15𝑁2 fixation.
 The uptake of 15N2 by an organism is the only technique (apart from
growing plants in N free medium) to unequivocally prove active 𝑁2
fixation.
Potential limitation:
 Include the high cost of a mass spectrometer
 The technical skills required to accurately determine the isotopic
composition of plant (and sometimes soil) samples and the expense of
analyses.
Acetylene reduction assay method:
Principle:
 Root systems are placed in an airtight vessel, or contained within a
cuvette that can be connected to a flowing gas stream, and exposed to a
acetylene enriched atmosphere (usually 10% C2H2 in air).The rate of
ethylene accumulation in gas samples collected over a set interval is
measured using a chromatograph.
Advantages:
 The C2H2 reduction assay is a very sensitive diagnostic tool for detecting
nitrogenase activity.
 It is simple, rapid and relatively inexpensive, and many measurements can
be undertaken daily.
Limitations:
 C2H2 is explosive and poses a possible hazard to the experimenter.
 It is conducted only on decapitated root systems, groups of detached (or
even single) nodules or entire plants.
 Assays were undertaken in closed vessels containing approximately 0.1
atmosphere acetylene.
 Measurements reflect nitrogenase activity for only the duration of the
assay.
Conclusion:
 While the C2H2 reduction assay may be quantitative for pot studies under some
conditions, and can provide a useful tool for detecting N2 fixing activity in both
leguminous and non leguminous plants, the calculated rates of N2 fixation cannot be
extrapolated beyond the incubation vessel.
 As a consequence, the method is unsuitable for measuring N2 fixation at field scales.
Hydrogen evolution method:
Principle:
 Hydrogen gas is an obligate by product of N2 fixation in legume nodules,
and its production may account for about 35% of the energy consumed in
nitrogenase activity.
 An indirect measure of nitrogenase activity can thus be obtained by placing
a nodulated root system in a cuvette and quantifying the increase in H2
concentrated in a gas stream using a flow through H2 sensor or gas
chromatograph.
N2 + 8H+ + 8e− 2NH3 + H2
 Advantages:
 Measuring H2 evolution is a simple approach that has been used since the 1960s as an
assay of nitrogenase activity.
 Flow through H2 analysers are extremely sensitive and cheap and the procedure is less
labour intensive than assaying acetylene reduction.
 Measurement of H2 evolution in air do not inhibit nitrogenase activity, so repeated
measurements can be performed on the same plant material
Limitations:
 It is unsuitable for use with soil based systems.
 H2analysers are sensitive to water vapour and temperature changes, and analysis can be
affected by O2 and carrier gases ,thus requiring careful calibration.
 Extended exposure to Ar:O2 causes a decline in nitrogenase activity.
 Measurements reflect nitrogenase activity for only the duration of assay.
REFERENCE:
Measuring plant associated Nitrogen fixation in
agricultural systems –David Herridge, Georg Cadisch
By:-
Hanamant M. S.
M. Sc (Agri) Agronomy
COA, UAS, GKVK,
Bengaluru

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Biological Nitrogen Fixation

  • 1.
  • 2. Contents:  Introduction  Methods for measuring N2 fixation  Nitrogen balance method  Nitrogen difference method  Ureides method  𝟏𝟓 𝑵 isotope techniques  Acetylene reduction assay  Hydrogen evolution method
  • 3. Introduction  N2 gas are found 78.084%on atmosphere of earth.  Nitrogen is an essential element for plant growth and development and a key issue of agriculture.  N2 are found in molecular N2 (𝑵 ≡ 𝑵) form in soil.  Dinitrogen is more stable, so we need of nitrogen fixation.  Most studies indicate that nitrogen fertilizers contribute to resolving the challenge the world is facing, feeding the human population.  The Green revolution was accompanied by an enormous increase in the application of nitrogen fertilizer.
  • 4.  Nitrogen fixation is a process by which nitrogen of the Earth's atmosphere is converted into ammonia (NH3), nitrogen salts or other molecules available to living organisms.  Biological Nitrogen Fixation(BNF) is known to be a sustain agriculture and increase soil fertility.  Research on microorganisms and plants able to fix nitrogen contributes largely to the production of bio fertilizers.  Thus it is important to ensure that BNF research and development will take into account the needs of farmers in the developing countries mainly.
  • 5. Role of nitrogen in Plant » Major substance in plants next to water » Building blocks » Constituent element of »Chlorophyll »Cytochromes »Alkaloids »Many vitamins » Plays important role in metabolism, growth, reproduction and heredity
  • 6. Sources of Nitrogen Atmospheric Nitrogen – 78.084%of atmosphere. – Plants cannot utilize this form. – Some Bacteria, Blue Green Algae, leguminous plants. Nitrates, Nitrites and Ammonia – Nitrate is chief form. Amino acids in the soil – Many soil organisms use this form. – Higher plants can also taken by higher plants. Organic Nitrogenous compounds in insects – Insectivorous plants.
  • 7.
  • 8.
  • 9. Why measure 𝑵 𝟐 fixation?  Ecological consideration require an understanding of the relative contribution of 𝑵 𝟐 fixing components to the N-cycle.  Measurement of 𝑁2 fixation enable an investigator to evaluate the ability of indigenous Rhizobium spp. to effectively nodulate newly introduced legumes.  Development of sustainable farming systems.  Understanding of the amount of 𝑵 𝟐fixed by legumes as influenced by soil management or cultural practices allows development of efficient agricultural and agroforesty production systems.
  • 10. Methodsfor measuring 𝑵 𝟐 Fixation  Estimate𝑁2 fixation as the net increase in total N of a plant –soil system  N balance method.  Separate plant N into the fraction taken up from the soil and the fraction derived from the N2 fixation  N difference method,  15N isotope techniques and  ureide methods.  Measure the activity of nitrogenase and the enzyme responsible for𝑁2fixation –  Acetylene reduction and  Hydrogen evolution methods.
  • 11. Nitrogen balance method  Principle behind these method:  If all possible external inputs, except N2 fixation, and outflows of N can be accounted for incremental changes in soil N quantified, a net positive N balance in the system under study may be attributed to N2 fixation.  Assumptions:  Potential inputs of N that are difficult to measure, such as wet and dry deposition associated with rainfall and dust, extraction of N from deep soil horizons or from the watertable, and 𝑁𝐻3 absorption by leaves, are small and insignificant compared with inputs via N2 fixation.
  • 12.
  • 13. Advantages:  In theory the method is simple. Any inputs of N in fertilisers or organic sources are relatively easily quantified, as are amounts of N removed from the site in plant and animal products.  Potential limitations:  Loss of N through NH3 volatilisation, denitrification, leaching losses, run off and erosion can be substantial, and difficult to measure, of 𝑁2 fixation inputs.  In pasture systems, spatial variability of both N inputs and N losses associated with excreta from grazing animals can be difficult to quantify.  Even small errors arising from soil sampling or analysis, or in measures of bulk density, result in large discrepancies when estimating total soil N.
  • 14. Nitrogen difference method Principle:  N difference compares total N of the𝑁2 fixing species with that of a neighbouring non 𝑁2 fixing species, with the difference between the two measures assumed to be due to 𝑁2 fixation. Assumptions: • The N accumulated by the non 𝑁2 fixing control is derived only from soil N, and its N content represents the amount of soil mineral N available for plant growth. • The 𝑁2 fixing plants use the same amount of soil mineral N as the non 𝑁2 fixing control.
  • 15.
  • 16. Advantages:  It is a simple,low cost method that can be applied when facilities for only dry matter determination and total N analyses are available. Potential limitations:  The method requires a non N2 fixing control to be included in the experimental design.  Difference between N2 fixing and non N2 fixing plants in root morphology and rooting depth can result in different capacities to use soil N.  There may be errors in accurately quantifying total N accumulated by the𝑁2 fixing plants and control plants.
  • 17. Conclusions:  The technique is likely to be most reliable under condition of low plant available N and where there are large differences in N yield between the𝑁2fixing plants and non𝑁2 fixing control.
  • 18. Uredines method:  Principle :  In many tropical and subtropical legumes, the N-solute composition in xylem sap and stem segments changes from one dominated by the ureidesallantion and allantoic acid in𝑁2 fixing plants, to one dominated by nitrate and aminoacids in plants utilising soil N.  The substantial differences in the principal forms of N transported in the xylem between symbiotic and non symbiotic plants allow incoming fixed N and soil N to be distinguished.  Assumptions:  The N solute composition of xylem sap and stem segments reflects current N assimilation by the legume.  The abundance of ureides relative to other N solutes can be used as an indirect measure of the percentage of legume N derived from the atmosphere i.e.,%Ndfa.
  • 19. Advantages:  The Procedure used to sample xylem sap and stem segments of field grown legumes are not technically demanding.  Ureides, nitrate and aminoacids in xylem sap and stem segments can be easily and rapidly analysed using simple colorimetric assays in a testtube. There is no need for expensive or sophisticated equipment.  No special experimental design is required, so the method can be used for on farm measurement of 𝑁2fixation.  Many samples can be collected and analysed in a single day.
  • 20. Potential limitations:  Its use is restricted to ureide exporting legume species (e.g., Glycine, Vigna, Phaseolus, Macroptilium).  The method provides an indirect measure of %Ndfa, necessitating calibration against another method, e.g.,15N isotope dilution.  Different calibration may be needed during vegetative and reproductive stages of development.  The technique provides only a point in time estimate of the legumes symbiotic dependence at, or shortly before, the time of sap sampling, so repeated sampling of xylem composition and plant N may be required during a growing season.
  • 21. Conclusions: It is a versatile and useful technique that can be applied in glasshouse and field experiments, or used in farmers field, to assess𝑁2 fixation by ureide exporting tropical and subtropical legumes. It can be provide estimate of𝑁2 fixation (%Ndfa and total 𝑁2fixed) for field grown legumes similar to those from more sophisticated techniques.
  • 22. 15N isotope techniques: Principle:  The roots of intact or detached plants are placed in a chamber with an atmosphere enriched in 15N.The amount of 15N in the plant at the end of the incubation period is a direct measure of the rate 𝑁2 fixation.
  • 23.
  • 24. Advantages:  It is a direct measure of 15𝑁2 fixation.  The uptake of 15N2 by an organism is the only technique (apart from growing plants in N free medium) to unequivocally prove active 𝑁2 fixation. Potential limitation:  Include the high cost of a mass spectrometer  The technical skills required to accurately determine the isotopic composition of plant (and sometimes soil) samples and the expense of analyses.
  • 25. Acetylene reduction assay method: Principle:  Root systems are placed in an airtight vessel, or contained within a cuvette that can be connected to a flowing gas stream, and exposed to a acetylene enriched atmosphere (usually 10% C2H2 in air).The rate of ethylene accumulation in gas samples collected over a set interval is measured using a chromatograph.
  • 26.
  • 27. Advantages:  The C2H2 reduction assay is a very sensitive diagnostic tool for detecting nitrogenase activity.  It is simple, rapid and relatively inexpensive, and many measurements can be undertaken daily. Limitations:  C2H2 is explosive and poses a possible hazard to the experimenter.  It is conducted only on decapitated root systems, groups of detached (or even single) nodules or entire plants.  Assays were undertaken in closed vessels containing approximately 0.1 atmosphere acetylene.  Measurements reflect nitrogenase activity for only the duration of the assay.
  • 28. Conclusion:  While the C2H2 reduction assay may be quantitative for pot studies under some conditions, and can provide a useful tool for detecting N2 fixing activity in both leguminous and non leguminous plants, the calculated rates of N2 fixation cannot be extrapolated beyond the incubation vessel.  As a consequence, the method is unsuitable for measuring N2 fixation at field scales.
  • 29. Hydrogen evolution method: Principle:  Hydrogen gas is an obligate by product of N2 fixation in legume nodules, and its production may account for about 35% of the energy consumed in nitrogenase activity.  An indirect measure of nitrogenase activity can thus be obtained by placing a nodulated root system in a cuvette and quantifying the increase in H2 concentrated in a gas stream using a flow through H2 sensor or gas chromatograph. N2 + 8H+ + 8e− 2NH3 + H2
  • 30.  Advantages:  Measuring H2 evolution is a simple approach that has been used since the 1960s as an assay of nitrogenase activity.  Flow through H2 analysers are extremely sensitive and cheap and the procedure is less labour intensive than assaying acetylene reduction.  Measurement of H2 evolution in air do not inhibit nitrogenase activity, so repeated measurements can be performed on the same plant material Limitations:  It is unsuitable for use with soil based systems.  H2analysers are sensitive to water vapour and temperature changes, and analysis can be affected by O2 and carrier gases ,thus requiring careful calibration.  Extended exposure to Ar:O2 causes a decline in nitrogenase activity.  Measurements reflect nitrogenase activity for only the duration of assay.
  • 31. REFERENCE: Measuring plant associated Nitrogen fixation in agricultural systems –David Herridge, Georg Cadisch By:- Hanamant M. S. M. Sc (Agri) Agronomy COA, UAS, GKVK, Bengaluru