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How we communicate science. 
Concussions and the peer review process
Learning objectives 
• Contrast peer-reviewed articles vs. 
popular sources for biomedical topics. 
• Identify parts of peer reviewed/primary 
source literature in the sciences. 
• Recall steps of the peer review process.
Remember! 
Use the library web site to find books 
and articles. 
http://library.uoregon.edu 
(not mendeley)
David Howell’s research 
presented by Jim Davis
https://www.youtube.com/watch?v=rrHqgsABcRs
More on Dr. Chou’s work on concussions 
http://cascade.uoregon.edu/winter2014/online-extras/ 
walk-this-way/ 
http://cascade.uoregon.edu/winter2014/natural 
-sciences/not-so-fast-concussions-and-recovery-time/
Faking 
it 
Ignoramous Expert Faking 
it, 
with 
honor
Peer-review v. Popular 
• Groups of 3-5. 
• 1 person from your group to get 3 
magazines/journals - 1 from each pile & a chart 
for recording your answers. 
• On the chart write down WHY you think the 
magazine or journal you have is peer-reviewed or 
a popular source. 
• 1 person who is willing to share what you found, 
should come back to the front. 
• Juniors and Seniors – make sure you can tell us 
which ones are unique to this format.
Peer reviewed articles Popular newspaper or magazine articles 
Write down WHY the journal or magazine is in each category.
Bring the journals back to the front of the class.
Survey Q & As 
Who is the first author and where do the 
authors work?
Q3: Read the introduction (NOT the abstract). 
What is the big question? 
A. Does monitoring a person's gait while 
administering single and duel function Stroop 
tests the best way to judge recovery from a 
concussion? 
B. Are high school students playing sports getting 
more concussions each year and aren't studied 
enough? 
C. How long does it take adolescents to recover 
their ability to control balance while walking and 
completing a simultaneous cognitive task in 
comparison to healthy control subjects?
Q4: What are the authors trying to 
answer specifically in this article? 
A. Mental and motor skills are impaired for up to 2 
months after a sports related concussion in 
young people. 
B. Quantifies the degree of gait balance control 
disturbances in different conditions from the 
time of injury and through the following two 
months of recovery. 
C. Gait balance in adolescents recovering from 
concussions should be studied. 
D. None of these.
Q5: What do the authors think the 
results mean? 
A. Adolescents recovering from a concussion have 
greater difficulty with their balance while walking and 
doing other tasks for several months or more. This 
can be used to diagnose and treat the patients. 
B. Adolescents recover quickly after concussions and 
should be cleared to return to play as soon as 
possible. 
C. Dual task tests in adolescents are difficult to do and 
it's impossible to account for all of the variables. 
D. Something else.
Is this article an example of a peer-reviewed 
or popular source?
Q7-9: The Associated Press. Congressmen Chide College 
Conferences’ Concussion Policies. The New York 
Times. http://www.nytimes.com/2010/02/02/sports/football/ 
02concussions.html. Published February 2, 2010. 
Who is the intended audience?, Who are the authors?, What 
is the big question?, Specific question? 
A. An educated person, reading the newspaper; written by 
reporters; generally it's about who should protect young 
athletes who get concussions; specifically about what 
regulations should be used. 
B. For medical researchers; written by medical doctors; 
concussions; regulations. 
C. Only intended to be understandable for specialists with 
years of experience on concussions; written by leading 
doctors in the field; traumatic brain injuries in young 
people; long term health impacts on college athletes.
Can this be both 
Peer Reviewed journal article 
as well as a 
Popular magazine article?
WHAT IS A PEER REVIEWED ARTICLE? 
http://vimeo.com/27119325
h 
http://www.lib.ncsu.edu/tutorials/scholarly-articles/
Name all the parts of a 
peer reviewed article 
1. 8. 
2. 9. 
3. 10. 
4. 11. 
5. 12. 
6. 13. 
7. 14.
the peer review journal article 
process
What does 
peer-review look like?
Peer Review Process 
Manuscript 
(potential article) 
Sent to journal editor 
Sent to three to five experts in the field 
Blind review Blind review Blind review 
Manuscript 
(potential article) 
1. Accept 
2. Revise 
3. Reject
The wikipedia entry 
How can we improve the information about 
concussions in wikipedia?
Next steps: Your project 
Concussion page is semi-protected
Your ideas included: 
A. Fix the citations (find better sources, fix dead links, 
etc.) 
B. Fix the citations and check for accuracy (see if the 
articles say what the wiki entry says they should 
say, are there better sources to use for those 
sections/improve the citations, etc.) 
C. Improve the citations used and revise the existing 
information in the article. 
D. Expand the article (sports concussions, gender 
differences, treatment options, brain activity, 
severity, causes, etc.) 
E. Do research on a concussion related topic of your 
own.
The wikipedia entry 
How can we improve the information about 
concussions in wikipedia? 
Tell the story! 
What do you need to know?
Peer reviewed articles Popular newspaper or magazine articles 
Write down WHY the journal or magazine is in each category.
Name all the parts of a 
peer reviewed article 
1. 8. 
2. 9. 
3. 10. 
4. 11. 
5. 12. 
6. 13. 
7. 14.

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HPHY 212 Week 3, lecture 1 publications-fall 2014

  • 1. How we communicate science. Concussions and the peer review process
  • 2. Learning objectives • Contrast peer-reviewed articles vs. popular sources for biomedical topics. • Identify parts of peer reviewed/primary source literature in the sciences. • Recall steps of the peer review process.
  • 3. Remember! Use the library web site to find books and articles. http://library.uoregon.edu (not mendeley)
  • 4. David Howell’s research presented by Jim Davis
  • 5.
  • 7. More on Dr. Chou’s work on concussions http://cascade.uoregon.edu/winter2014/online-extras/ walk-this-way/ http://cascade.uoregon.edu/winter2014/natural -sciences/not-so-fast-concussions-and-recovery-time/
  • 8. Faking it Ignoramous Expert Faking it, with honor
  • 9.
  • 10. Peer-review v. Popular • Groups of 3-5. • 1 person from your group to get 3 magazines/journals - 1 from each pile & a chart for recording your answers. • On the chart write down WHY you think the magazine or journal you have is peer-reviewed or a popular source. • 1 person who is willing to share what you found, should come back to the front. • Juniors and Seniors – make sure you can tell us which ones are unique to this format.
  • 11. Peer reviewed articles Popular newspaper or magazine articles Write down WHY the journal or magazine is in each category.
  • 12. Bring the journals back to the front of the class.
  • 13. Survey Q & As Who is the first author and where do the authors work?
  • 14. Q3: Read the introduction (NOT the abstract). What is the big question? A. Does monitoring a person's gait while administering single and duel function Stroop tests the best way to judge recovery from a concussion? B. Are high school students playing sports getting more concussions each year and aren't studied enough? C. How long does it take adolescents to recover their ability to control balance while walking and completing a simultaneous cognitive task in comparison to healthy control subjects?
  • 15. Q4: What are the authors trying to answer specifically in this article? A. Mental and motor skills are impaired for up to 2 months after a sports related concussion in young people. B. Quantifies the degree of gait balance control disturbances in different conditions from the time of injury and through the following two months of recovery. C. Gait balance in adolescents recovering from concussions should be studied. D. None of these.
  • 16. Q5: What do the authors think the results mean? A. Adolescents recovering from a concussion have greater difficulty with their balance while walking and doing other tasks for several months or more. This can be used to diagnose and treat the patients. B. Adolescents recover quickly after concussions and should be cleared to return to play as soon as possible. C. Dual task tests in adolescents are difficult to do and it's impossible to account for all of the variables. D. Something else.
  • 17. Is this article an example of a peer-reviewed or popular source?
  • 18. Q7-9: The Associated Press. Congressmen Chide College Conferences’ Concussion Policies. The New York Times. http://www.nytimes.com/2010/02/02/sports/football/ 02concussions.html. Published February 2, 2010. Who is the intended audience?, Who are the authors?, What is the big question?, Specific question? A. An educated person, reading the newspaper; written by reporters; generally it's about who should protect young athletes who get concussions; specifically about what regulations should be used. B. For medical researchers; written by medical doctors; concussions; regulations. C. Only intended to be understandable for specialists with years of experience on concussions; written by leading doctors in the field; traumatic brain injuries in young people; long term health impacts on college athletes.
  • 19. Can this be both Peer Reviewed journal article as well as a Popular magazine article?
  • 20. WHAT IS A PEER REVIEWED ARTICLE? http://vimeo.com/27119325
  • 22. Name all the parts of a peer reviewed article 1. 8. 2. 9. 3. 10. 4. 11. 5. 12. 6. 13. 7. 14.
  • 23. the peer review journal article process
  • 24. What does peer-review look like?
  • 25. Peer Review Process Manuscript (potential article) Sent to journal editor Sent to three to five experts in the field Blind review Blind review Blind review Manuscript (potential article) 1. Accept 2. Revise 3. Reject
  • 26. The wikipedia entry How can we improve the information about concussions in wikipedia?
  • 27. Next steps: Your project Concussion page is semi-protected
  • 28.
  • 29.
  • 30. Your ideas included: A. Fix the citations (find better sources, fix dead links, etc.) B. Fix the citations and check for accuracy (see if the articles say what the wiki entry says they should say, are there better sources to use for those sections/improve the citations, etc.) C. Improve the citations used and revise the existing information in the article. D. Expand the article (sports concussions, gender differences, treatment options, brain activity, severity, causes, etc.) E. Do research on a concussion related topic of your own.
  • 31. The wikipedia entry How can we improve the information about concussions in wikipedia? Tell the story! What do you need to know?
  • 32. Peer reviewed articles Popular newspaper or magazine articles Write down WHY the journal or magazine is in each category.
  • 33. Name all the parts of a peer reviewed article 1. 8. 2. 9. 3. 10. 4. 11. 5. 12. 6. 13. 7. 14.

Editor's Notes

  1. I want you to learn a lot of things. But, I think I can break down my portion of the course into the following learning objectives. Details here: Distinguish between peer reviewed articles and popular treatments of a biomedical topic. Recognize that science in the news comes from science research. Identify parts of peer reviewed/primary source literature in the sciences. Identify key components of the peer review process.
  2. End at 9am
  3. What does this image mean to you? Yes! AND?
  4. ‪What is a concussion? With Dr. David Frim, Chief of Neurosurgery at UCM‬
  5. Ignoramous to Expert Faking It Faking it with honor
  6. Telling the story – science is full of stories – we’ll try to talk about a few of them together First we need to go over one of the foundations of science – the peer review process The more you understand it, the easier it will be to talk about http://www.nlm.nih.gov/research/visible/image/head.jpg This image is from the NLM – visible human project – an amazing undertaking to help us all understand more about human physiology
  7. 9:10
  8. 9:15 – 9:20 Use the document camera – give volunteers candy! Juniors and seniors: Which ones are easy to see when you have the whole journal? Which ones are mostly at the article? How are scholarly articles different from popular ones like the newspaper article you read for class? References Data Author Etc. After a few minutes – have groups that are done come down and put down something for each
  9. Hand out candy
  10. Howell and UO
  11. C.
  12. B. This paper quantifies the degree of gait balance control disturbances in different conditions across time in a longitudinal and prospective manner; from the time of injury and through the following two months of recovery. NOTE: CHANGE A to less true?!
  13. A
  14. A. Most of you said general public – but a fair number mentioned NCAA and college athletic program – could also be true, but generally not scholars talking to scholars.
  15. Peer review = THE RULES There’s a Fight club analogy here…..
  16. Anatomy of a peer reviewed article – highlighting 9 different aspects here http://www.lib.ncsu.edu/tutorials/scholarly-articles/ Write down all of the parts of a peer reviewed article – 2 min
  17. WHIP Around here – write down all of the parts of a scholarly article – start with 1 person saying something – if you have that on your list – put a check next to it – when we get to the end of your list – you’re done – anyone with additional items keeps going – I’ll try typing answers as we go Publication/journal Title Authors Abstract Introduction Article text Methods Charts/data/graphs Results Discussion Conclusions References pagination
  18. How do articles get into journals?
  19. Karduna bring in notes from a peer-reviewed article to show students
  20. Graphic from Dominque Turnbow, UCSD former Biomedical librarian, currently in charge of Instructional Design Can get accepted with revisions, rejected and resubmit, accepted resubmit
  21. We want you to be able to tell science stories too – either as scientists – researchers in your own right Or to read and understand what’s being said and make your own decisions
  22. https://en.wikipedia.org/wiki/Wikipedia:Protection_policy#semi I am a little bit confused by this question. If it is asking what our class could do to better the Wikipedia page on Concussions then that doesn't make much sense because the page is locked down and complete. In general i think it would be beneficial for the class to dive deeper into one of these references and maybe see how they are truly used in the Wikipedia page.
  23. Do you want to do any of these? Add to the to-do list?
  24. This one?
  25. These were terrific. Insightful, thoughtful, We’ll go through all of the different things I asked you to do from the form on Wednesday.
  26. PRINT
  27. WHIP Around here – write down all of the parts of a scholarly article – start with 1 person saying something – if you have that on your list – put a check next to it – when we get to the end of your list – you’re done – anyone with additional items keeps going – I’ll try typing answers as we go Publication/journal Title Authors Abstract Introduction Article text Methods Charts/data/graphs Results Discussion Conclusions References pagination