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Steve JH Lee
• Genetic Variability within a species measures how much variety of
  the genotype of organisms exists in a population

   This means how many types of a specific gene/trait exists in a
  population
• DO NOT CONFUSE THIS WITH GENETIC DIVERSITY


        Genetic Diversity                Genetic Variability

   Tendency of individual genotypes    The amount of variation seen
       to vary from one another       (phenotype from genotype) in a
                                           particular population
               Cause                              Effect
• Lets consider a hypothetical case:
    2 men are trapped in a savannah. Each brought with him 5 survival
  items.
    Joe brings a knife, compass, water purifier, a pistol, and a
  sunglass
    Kevin brings 5 hunting rifles and unlimited ammunition to last
  his stay


Who do you think has a better chance of surviving? Of course at first it
   may seem as if Kevin has the advantage because he will not have
   trouble feeding himself and Joe has brought a lot of useless stuff
• But what if there was a severe sandstorm and both were swept
  away and lost all sense of direction? Who would be more prepared?

   Of course Joe with his compass
• Having a variety of genes in a population
   is important because it gives
   BIODIVERSITY


• Without variability, it becomes difficult for
   a population to adapt to unpredictable
   environmental changes
   Remember Kevin’s mistake!!


• Genetic Variability  Genetic Diversity
           Better Fitness
• For example, lets say a deadly virus/bacteria kills off organisms that
   have Gene A1

   If all organisms were uniform and had only 1 type of the gene,
   A1, all organisms in the population would DIE



• However if a diverse population has multiple versions of gene, or a
   VARIETY of genes: A1, A2, A3, A4, .. A99 then only A1 would die
   and the rest would survive.
• That means less Variability = more
    prone to extinction



 • Genetic variability is also the key factor
    in evolution, natural selection.



 • This is because it affects how much of a
    population are handle environmental
    stress and survive

Now we will look at the individual mechanisms that produce Genetic Variability
•    In biology there are 3 main sources of Genetic Variability:
    1. Meiosis
          Crossing Over (Homologous Recombination)
          Random Orientation
          Independent Assortment
          Random Fertilization
    2. Mutations
           Point Mutations
           Insertions/Deletions
           Amplifications
      3. Random Mating
•   Homologous Recombination is one major source
    of genetic variety in animals



•   Remember in Interphase homologous
    chromosomes duplicate and associate during
    Prophase I



•   This formation is known as a Tetrad or a Bivalent



•   You generate variety when you guarantee infinite #
    of possible combinations
•   Crossing Over takes place where
    alleles between non-sister chromatids
    are exchanged between homologous
    chromosomes.

     In a sense, the genes are mixed up
    together

     Knowing that there are millions of
    alleles on a single chromosome think of
    the number of the possibilities!!
The Steps of Crossing Over/Homologous
Recombination


• Synapsis: the homologous chromosomes
associate and join


• Chiasma: alleles in neighboring non-sister
chromatids are exchanged via help of cutting
enzymes.


• Recombination: after the exchange the
alleles are swapped.
Step 1. Interphase, homologous pair replicates. 2
copies of each pair held together by centromere and
each copy is called sister chromatid


Step 2. Molecule cohesion occurs and homologous
pairs are held together. Parallel “arms” between non-
sister chromatids exchange alleles.
   Chiasmata= allele exchange sites


Step 3. cohesion breaks apart. Homologous pair still
held at the chiasmata.


Step 4. Anaphase finally breaks apart the
homologous pair with different gene combinations
Recall: More Variability = More Combination Possibilities


•   The next major source of variation is Metaphase I and Metaphase II when the
    homologous chromosomes (I)/sister chromatids (II) separate


•   Random orientation: there is no fixed designation of how homologous
    chromosomes separate


          Essentially this means homologous chromosomes are free to go which
    side they want
          Assuming that there are 2 possibilities for each chromosome (2 poles) that
    means there are 223 possible types of cells with different combinations of genes
    !!
•   The 2nd Random Orientation occurs during Metaphase II

     Unlike Metaphase I, it is much less significant in terms of contributing to
    genetic diversity



                    Metaphase I                                      Metaphase II

     Entire homologous chromosomes separate,            Sister chromatids separate which are not as
      both significantly different from each other in     dramatically different except areas where
         terms of type and orientation of alleles              crossing-over has taken place
                     223                                                   223

          Lots of variation in gametes                       Some variation in gametes
Random Orientation  Independent Assortment in that the way
      chromosomes/chromatids randomly segregate form different
      combinations of chromosomes in each final haploid gamete




Very helpful animation regarding Random Orientation/Independent Assortment
LINK: http://www.sumanasinc.com/webcontent/animations/content/independentassortment.html
Mendel’s law of Independent Assortment states that :
         • Allele pairs separate independently during the formation of
         gametes (Random Orientation)


         • Traits are transmitted to offspring independent of one another




EXCEPTION: Linked Genes
Linked genes are genes that are inherited together because they are relatively
close to each other on the same chromosome
  Because of their distance, it is unlikely for them to get recombinated
 Cross-Over/Homologous Gene Recombination
  Increases the variety in genes through random allele rearrangement
  Even new combinations of linked genes
  Increases genetic diversity of pop
 Random Orientation/Independent Assortment
  2n possible gametes
  For humans that is 8,388,608 possible gametes for one meiosis
Is that all for Meiosis?
NO!!!
Random Fertilization means that a

    random male gamete sperm will fertilize

    a random female game egg




8.4 million possibilities      x          8.4 million possibilities
               = 70,036,874,418,000 possibilities


…. And this is NOT counting Crossing Over
1. Crossing Over: homologous gene recombination leads to rearrangement
   of alleles

2. Random Orientation: homologous chromosomes/sister chromatids
   randomly segregate and assort with each other creating 2^n possibilities

3. Random Fertilization: a randomly produced male gamete fertilizes a
   random female gamete, squaring the number of variable possibilities.



Assessment Statements with Meiosis Variability:
   10.1.1
   10.1.2
   10.1.3
   10.1.4
Whereas meiosis is a more direct and short term mechanism for

  genetic variability, mutations are long-term and evolutionary

  mechanism for population diversity




  By long-term, takes multiple generation for the changes to get

  integrated
Genetic mutations are changes in a cell’s genome/DNA sequence with
multiple causes including radiation, viruses, and errors in meiosis and DNA
replication


      A mutation is passed on to the offspring stably who will either
resemble that mutation or carry the allele.


      Acquired Mutations such as cancer however cannot be passed on
to offspring
Point Mutations or base-substitutions
   occur when a single nucleotide is
   replaced with another



 Often a result of chemical damage or
   malfunction in DNA replication



Result?: the specific codon in the specific
   allele is misread, protein structure is
   altered

    In another words that protein is
   defunct
In insertions and deletions occur when one or
   more nucleotides are added or deleted from the
   DNA sequence.



 Usually caused by transposable elements or
   errors during replication (such as AT repeats)



More significant than point mutations

   this is because the entire DNA sequence is
   shifted/moved and all genes in that DNA
   sequence are misread

   ALL GENES in that sequence cannot be
   read
Mutations can be achieved in 2 ways

   1. Somatic Mutations (acquired mutations) NOT passed down

     Ex: UV light, cancer

   2. Germ-line Mutations (mutation in a person’s DNA that is passed
  down through gamete formation)



When a mutation is beneficial, such as pesticide-resistance, or
  harmful according to the situation, it fuels natural selection
List of all Assessment Statements

4.1.3 Define Gene Mutation

4.1.4 Explain the consequences of base-substitution in relation to
   transcription/translation using Sickle-cell anemia as an example



10.1.1 Describe the behavior of chromosomes in phases of meiosis

10.1.2 Outline the formation of chiasmata during cross-over

10.1.3 Explain how meiosis results in effective infinite variety in gametes
   through crossing-over in Prophase I and random orientation in Metaphase I
   and II

10.1.4 State Mendel’s Law of Independent Assortment
List of all External Resources

1.     Click 4 Biology: topics 4 and 10

     - Topic 4: http://click4biology.info/c4b/4/gene4.htm

     - Topic 10: http://click4biology.info/c4b/10/gene10.htm

2. Intranet Biology: topic 8- genetics

     - Link: http://intranet.canacad.ac.jp:3445/BiologyIBHL1/5326

3. Wikipedia articles

     - Mutations: http://en.wikipedia.org/wiki/Mutation

     - Homologous Recombination: http://en.wikipedia.org/wiki/Homologous_recombination

4. I-biology Presentations

     - 4.1 http://i-biology.net/ibdpbio/04-genetics-and-genetic-engineering/chromosomes-genes-alleles-and-mut
       ations/

     - 10.1 http://i-biology.net/ahl/10-genetics-ahl/10-1-meiosis/

5. Interesting Independent Assortment Resource

     - Link: http://www.sumanasinc.com/webcontent/animations/content/independentassortment.html
List of all External Resources (2)

6. Clegg Textbook (helps clarify some details)

    - pg 97 – 100; pg 328 – 333

7. Senior Biology Questions

    - pg 181-182

    - pg 185-190

    - pg 194-199

8. Study Guide (brief summary)

    - pg 56

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4 Genetics - How variability is produced in a population

  • 2. • Genetic Variability within a species measures how much variety of the genotype of organisms exists in a population  This means how many types of a specific gene/trait exists in a population • DO NOT CONFUSE THIS WITH GENETIC DIVERSITY Genetic Diversity Genetic Variability Tendency of individual genotypes The amount of variation seen to vary from one another (phenotype from genotype) in a particular population Cause Effect
  • 3. • Lets consider a hypothetical case:  2 men are trapped in a savannah. Each brought with him 5 survival items.  Joe brings a knife, compass, water purifier, a pistol, and a sunglass  Kevin brings 5 hunting rifles and unlimited ammunition to last his stay Who do you think has a better chance of surviving? Of course at first it may seem as if Kevin has the advantage because he will not have trouble feeding himself and Joe has brought a lot of useless stuff
  • 4. • But what if there was a severe sandstorm and both were swept away and lost all sense of direction? Who would be more prepared?  Of course Joe with his compass
  • 5. • Having a variety of genes in a population is important because it gives BIODIVERSITY • Without variability, it becomes difficult for a population to adapt to unpredictable environmental changes  Remember Kevin’s mistake!! • Genetic Variability  Genetic Diversity  Better Fitness
  • 6. • For example, lets say a deadly virus/bacteria kills off organisms that have Gene A1  If all organisms were uniform and had only 1 type of the gene, A1, all organisms in the population would DIE • However if a diverse population has multiple versions of gene, or a VARIETY of genes: A1, A2, A3, A4, .. A99 then only A1 would die and the rest would survive.
  • 7. • That means less Variability = more prone to extinction • Genetic variability is also the key factor in evolution, natural selection. • This is because it affects how much of a population are handle environmental stress and survive Now we will look at the individual mechanisms that produce Genetic Variability
  • 8. In biology there are 3 main sources of Genetic Variability: 1. Meiosis  Crossing Over (Homologous Recombination)  Random Orientation  Independent Assortment  Random Fertilization 2. Mutations  Point Mutations  Insertions/Deletions  Amplifications 3. Random Mating
  • 9. Homologous Recombination is one major source of genetic variety in animals • Remember in Interphase homologous chromosomes duplicate and associate during Prophase I • This formation is known as a Tetrad or a Bivalent • You generate variety when you guarantee infinite # of possible combinations
  • 10. Crossing Over takes place where alleles between non-sister chromatids are exchanged between homologous chromosomes.  In a sense, the genes are mixed up together  Knowing that there are millions of alleles on a single chromosome think of the number of the possibilities!!
  • 11. The Steps of Crossing Over/Homologous Recombination • Synapsis: the homologous chromosomes associate and join • Chiasma: alleles in neighboring non-sister chromatids are exchanged via help of cutting enzymes. • Recombination: after the exchange the alleles are swapped.
  • 12. Step 1. Interphase, homologous pair replicates. 2 copies of each pair held together by centromere and each copy is called sister chromatid Step 2. Molecule cohesion occurs and homologous pairs are held together. Parallel “arms” between non- sister chromatids exchange alleles. Chiasmata= allele exchange sites Step 3. cohesion breaks apart. Homologous pair still held at the chiasmata. Step 4. Anaphase finally breaks apart the homologous pair with different gene combinations
  • 13. Recall: More Variability = More Combination Possibilities • The next major source of variation is Metaphase I and Metaphase II when the homologous chromosomes (I)/sister chromatids (II) separate • Random orientation: there is no fixed designation of how homologous chromosomes separate  Essentially this means homologous chromosomes are free to go which side they want  Assuming that there are 2 possibilities for each chromosome (2 poles) that means there are 223 possible types of cells with different combinations of genes !!
  • 14.
  • 15. The 2nd Random Orientation occurs during Metaphase II  Unlike Metaphase I, it is much less significant in terms of contributing to genetic diversity Metaphase I Metaphase II Entire homologous chromosomes separate, Sister chromatids separate which are not as both significantly different from each other in dramatically different except areas where terms of type and orientation of alleles crossing-over has taken place 223 223 Lots of variation in gametes Some variation in gametes
  • 16. Random Orientation  Independent Assortment in that the way chromosomes/chromatids randomly segregate form different combinations of chromosomes in each final haploid gamete Very helpful animation regarding Random Orientation/Independent Assortment LINK: http://www.sumanasinc.com/webcontent/animations/content/independentassortment.html
  • 17. Mendel’s law of Independent Assortment states that : • Allele pairs separate independently during the formation of gametes (Random Orientation) • Traits are transmitted to offspring independent of one another EXCEPTION: Linked Genes Linked genes are genes that are inherited together because they are relatively close to each other on the same chromosome  Because of their distance, it is unlikely for them to get recombinated
  • 18.  Cross-Over/Homologous Gene Recombination  Increases the variety in genes through random allele rearrangement  Even new combinations of linked genes  Increases genetic diversity of pop  Random Orientation/Independent Assortment  2n possible gametes  For humans that is 8,388,608 possible gametes for one meiosis
  • 19. Is that all for Meiosis?
  • 20. NO!!!
  • 21. Random Fertilization means that a random male gamete sperm will fertilize a random female game egg 8.4 million possibilities x 8.4 million possibilities = 70,036,874,418,000 possibilities …. And this is NOT counting Crossing Over
  • 22. 1. Crossing Over: homologous gene recombination leads to rearrangement of alleles 2. Random Orientation: homologous chromosomes/sister chromatids randomly segregate and assort with each other creating 2^n possibilities 3. Random Fertilization: a randomly produced male gamete fertilizes a random female gamete, squaring the number of variable possibilities. Assessment Statements with Meiosis Variability: 10.1.1 10.1.2 10.1.3 10.1.4
  • 23. Whereas meiosis is a more direct and short term mechanism for genetic variability, mutations are long-term and evolutionary mechanism for population diversity By long-term, takes multiple generation for the changes to get integrated
  • 24. Genetic mutations are changes in a cell’s genome/DNA sequence with multiple causes including radiation, viruses, and errors in meiosis and DNA replication  A mutation is passed on to the offspring stably who will either resemble that mutation or carry the allele.  Acquired Mutations such as cancer however cannot be passed on to offspring
  • 25. Point Mutations or base-substitutions occur when a single nucleotide is replaced with another  Often a result of chemical damage or malfunction in DNA replication Result?: the specific codon in the specific allele is misread, protein structure is altered  In another words that protein is defunct
  • 26. In insertions and deletions occur when one or more nucleotides are added or deleted from the DNA sequence.  Usually caused by transposable elements or errors during replication (such as AT repeats) More significant than point mutations  this is because the entire DNA sequence is shifted/moved and all genes in that DNA sequence are misread  ALL GENES in that sequence cannot be read
  • 27. Mutations can be achieved in 2 ways 1. Somatic Mutations (acquired mutations) NOT passed down Ex: UV light, cancer 2. Germ-line Mutations (mutation in a person’s DNA that is passed down through gamete formation) When a mutation is beneficial, such as pesticide-resistance, or harmful according to the situation, it fuels natural selection
  • 28. List of all Assessment Statements 4.1.3 Define Gene Mutation 4.1.4 Explain the consequences of base-substitution in relation to transcription/translation using Sickle-cell anemia as an example 10.1.1 Describe the behavior of chromosomes in phases of meiosis 10.1.2 Outline the formation of chiasmata during cross-over 10.1.3 Explain how meiosis results in effective infinite variety in gametes through crossing-over in Prophase I and random orientation in Metaphase I and II 10.1.4 State Mendel’s Law of Independent Assortment
  • 29. List of all External Resources 1. Click 4 Biology: topics 4 and 10 - Topic 4: http://click4biology.info/c4b/4/gene4.htm - Topic 10: http://click4biology.info/c4b/10/gene10.htm 2. Intranet Biology: topic 8- genetics - Link: http://intranet.canacad.ac.jp:3445/BiologyIBHL1/5326 3. Wikipedia articles - Mutations: http://en.wikipedia.org/wiki/Mutation - Homologous Recombination: http://en.wikipedia.org/wiki/Homologous_recombination 4. I-biology Presentations - 4.1 http://i-biology.net/ibdpbio/04-genetics-and-genetic-engineering/chromosomes-genes-alleles-and-mut ations/ - 10.1 http://i-biology.net/ahl/10-genetics-ahl/10-1-meiosis/ 5. Interesting Independent Assortment Resource - Link: http://www.sumanasinc.com/webcontent/animations/content/independentassortment.html
  • 30. List of all External Resources (2) 6. Clegg Textbook (helps clarify some details) - pg 97 – 100; pg 328 – 333 7. Senior Biology Questions - pg 181-182 - pg 185-190 - pg 194-199 8. Study Guide (brief summary) - pg 56