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@IBNU SAHIDHIR
                                  1
www.artaquaculture.blogspot.com
Contents
1. Introduction

2. Experimental procedures

3. SAS procedures

4. Result and discussion

5. Conclusion




                @IBNU SAHIDHIR
                                           2
         www.artaquaculture.blogspot.com
Three levels of fish stress indicator and 6 variables




1. Ecology and Physical Behaviour




2. Physiology and Biochemistry


3. Gene expression

   “Use 6 variables to measure fish stress in different species.”


                                @IBNU SAHIDHIR
                                                                      3
                         www.artaquaculture.blogspot.com
Experimental procedures

Using 12 species (20 gr/ind)
(herbivores, omnivores, carnivores ; freshwater, seawater fish)

Detecting stress by measure:
RNADNA ratio
Peroxidase (nm/ul)
Plasma glucose (mg/dl)
Swimming (cm/s)
SGR (%)
Live feed supply (ind/l)


               Are several indicator more powerful than the others ?
           Is it better use some kinds of indicator for certain species ?
                                       @IBNU SAHIDHIR
                                                                            4
                                www.artaquaculture.blogspot.com
Stressful conditions:


RNADNA ratio              = <1
Peroxidase (nm/ul)        =<70
Plasma glucose (mg/dl) = <100
Swimming (cm/s)           = specific species
SGR (%)                   = <1.0 %
Live feed supply (ind/l) =<5 ind/l




                         @IBNU SAHIDHIR
                                                    5
                  www.artaquaculture.blogspot.com
Daphnia < 5 ind/l



Swimming speed
    (cm/s)

                                            General acute stimulus
Plasma Glucose
                                                     and
    (mg/dl)
                                               acute responses

  Peroxidase
(nanomoles/ul)


   RNA/DNA
    (ng/ng)
                 @IBNU SAHIDHIR
                                                                     6
          www.artaquaculture.blogspot.com
@IBNU SAHIDHIR
                                  7
www.artaquaculture.blogspot.com
SAS procedures




       @IBNU SAHIDHIR
                                  8
www.artaquaculture.blogspot.com
@IBNU SAHIDHIR
                                  9
www.artaquaculture.blogspot.com
@IBNU SAHIDHIR
                                  10
www.artaquaculture.blogspot.com
Eigen Values and Eigen Vectors




                                              Peroxidase, Swimming activity, Food supply
RNA/DNA ratio, plasma glucose, SGR




                                            @IBNU SAHIDHIR
                                                                                           11
                                     www.artaquaculture.blogspot.com
@IBNU SAHIDHIR
                                  12
www.artaquaculture.blogspot.com
@IBNU SAHIDHIR
                                  13
www.artaquaculture.blogspot.com
@IBNU SAHIDHIR
                                  14
www.artaquaculture.blogspot.com
Principal components analysis reveals that 6 variables may grouped as two principal
component which contributes to most of the variances.

Rotation show more clearly that variables could be grouped as
ecological (SGR, swimming, food supply) and biological (RNA/DNA, peroxidase,
plasma glucose) indicators

Seabass, cobia, seabream, tiger grouper and catfish prefer biological indicator than
other fish




                                       @IBNU SAHIDHIR
                                                                                       15
                                www.artaquaculture.blogspot.com
@IBNU SAHIDHIR
                                  16
www.artaquaculture.blogspot.com

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Principal analysis

  • 1. @IBNU SAHIDHIR 1 www.artaquaculture.blogspot.com
  • 2. Contents 1. Introduction 2. Experimental procedures 3. SAS procedures 4. Result and discussion 5. Conclusion @IBNU SAHIDHIR 2 www.artaquaculture.blogspot.com
  • 3. Three levels of fish stress indicator and 6 variables 1. Ecology and Physical Behaviour 2. Physiology and Biochemistry 3. Gene expression “Use 6 variables to measure fish stress in different species.” @IBNU SAHIDHIR 3 www.artaquaculture.blogspot.com
  • 4. Experimental procedures Using 12 species (20 gr/ind) (herbivores, omnivores, carnivores ; freshwater, seawater fish) Detecting stress by measure: RNADNA ratio Peroxidase (nm/ul) Plasma glucose (mg/dl) Swimming (cm/s) SGR (%) Live feed supply (ind/l) Are several indicator more powerful than the others ? Is it better use some kinds of indicator for certain species ? @IBNU SAHIDHIR 4 www.artaquaculture.blogspot.com
  • 5. Stressful conditions: RNADNA ratio = <1 Peroxidase (nm/ul) =<70 Plasma glucose (mg/dl) = <100 Swimming (cm/s) = specific species SGR (%) = <1.0 % Live feed supply (ind/l) =<5 ind/l @IBNU SAHIDHIR 5 www.artaquaculture.blogspot.com
  • 6. Daphnia < 5 ind/l Swimming speed (cm/s) General acute stimulus Plasma Glucose and (mg/dl) acute responses Peroxidase (nanomoles/ul) RNA/DNA (ng/ng) @IBNU SAHIDHIR 6 www.artaquaculture.blogspot.com
  • 7. @IBNU SAHIDHIR 7 www.artaquaculture.blogspot.com
  • 8. SAS procedures @IBNU SAHIDHIR 8 www.artaquaculture.blogspot.com
  • 9. @IBNU SAHIDHIR 9 www.artaquaculture.blogspot.com
  • 10. @IBNU SAHIDHIR 10 www.artaquaculture.blogspot.com
  • 11. Eigen Values and Eigen Vectors Peroxidase, Swimming activity, Food supply RNA/DNA ratio, plasma glucose, SGR @IBNU SAHIDHIR 11 www.artaquaculture.blogspot.com
  • 12. @IBNU SAHIDHIR 12 www.artaquaculture.blogspot.com
  • 13. @IBNU SAHIDHIR 13 www.artaquaculture.blogspot.com
  • 14. @IBNU SAHIDHIR 14 www.artaquaculture.blogspot.com
  • 15. Principal components analysis reveals that 6 variables may grouped as two principal component which contributes to most of the variances. Rotation show more clearly that variables could be grouped as ecological (SGR, swimming, food supply) and biological (RNA/DNA, peroxidase, plasma glucose) indicators Seabass, cobia, seabream, tiger grouper and catfish prefer biological indicator than other fish @IBNU SAHIDHIR 15 www.artaquaculture.blogspot.com
  • 16. @IBNU SAHIDHIR 16 www.artaquaculture.blogspot.com