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無機物理方法(核磁共振部分) 
The Physical Methods in Inorganic 
Chemistry 
(Fall Term, 2004) 
(Fall Term, 2005) 
Department of Chemistry 
National Sun Yat-sen University 
Chapter 6
Nuclear Overhauser Effect (NOE) 
and NOESY
Population Transfer 
In population manipulations, the most commonly used technique is 
selective population transfer (SPT):
Nuclear Overhauser Effect (NOE) 
N 
S 
N 
S 
r 
The distance between the two spins therefore can be determined by disturbing 
one of them and observing how other is affected.
23Na 
electron
Nucleus-Electron OE: 
Mechanism 
547 
550 
547 
550 
W2 
W0 
99 =1+5=6 
100 
995 
1000 
W2>>W0 
577 
999 
98 
520 
=422+422=844
Nucleus-Electron OE: 
Mechanism 
547 
550 
547 
550 
W2 
W0 
99 =1+5=6 
100 
995 
1000 
W2<<W0 
990 
580 
517 
107 
=-410-410=-820
Nucleus-Nucleus OE 
(Nuclear OENOE): Mechanism 
54 
60 
54 
60 
W2 
W0 
18 =2+10=12 
20 
90 
100 
W2>>W0 
58 
90 
24 
56 
=32+32=64
Nucleus-Nucleus NOE: 
Mechanism 
54 
60 
54 
60 
W2 
W0 
18 =2+10=12 
20 
90 
100 
W2<<W0 
90 
64 
50 
24 
=-26-26=-52
Example: C-H NOE
Whenever a polarization or a transition 
of a spin is inverted or saturated, the 
polarization or transition of the other 
spins that are coupled to it will be 
affected. 
Perturbation on a Spin (Saturation/Inversion) + Cross Relaxation 
 
The Polarization of Another (Coupled) Spin Is Altered. 
Depending on the relative magnitudes of W2 and W0, NOE factor can be 
Larger or smaller than 1 and can be both negative and positive.
w0 w2
Longitudinal Relaxation Rates 
Also Affect NOE 
2 2 4 
m g R J J J 
rII I º I = + +  
r 0 w w 
1, [ (0) 3 ( 0) 6 (2 0)] 16 p 
2 6 
54 
60 
54 
60 
W2 
W0 
18 =2+10=12 
20 
90 
100 
W2,W0, R1I, R1S all affect overall NOE. 
Here W2 > W0, R1I, R1S 
80 
95 
19 
34 
=15+15=30 
R1I 
R1S 
R1S 
Positive NOE
Longitudinal Relaxation Rates 
Also Affect NOE 
2 2 4 
m g R J J J 
rII I º I = + +  
r 0 w w 
1, [ (0) 3 ( 0) 6 (2 0)] 16 p 
2 6 
54 
60 
54 
60 
W2 
W0 
18 =2+10=12 
20 
90 
100 
W2,W0, R1I, R1S all affect overall NOE. 
Here W2 > W0, R1I, but R1S>W2. 
90 
96 
18 
24 
=6+6=12 
R1I 
R1S 
R1S 
No NOE
Longitudinal Relaxation Rates 
Also Affect NOE 
2 2 4 
m g R J J J 
rII I º I = + +  
r 0 w w 
1, [ (0) 3 ( 0) 6 (2 0)] 16 p 
2 6 
18 =2+10=12 
20 
90 
100 
54 
54 
W2,W0, R1I, R1S all affect overall NOE. 
Here W0> W2, but R1I>W0, R1S 
95 
92 
19 
22 
=3-3=0! 
60 
60 
W2 
W0 R1I 
R1S 
R1S 
Negative NOE
Relaxation Rates and Motion 
logW 
W2 
log( w t ) 0 c W0 
W1 
-4 -3 -2 -1 0 1 2 3 4 
For slow motions, 
W0 is dominant 
and NOE tends to 
negative. 
Fast motion Slow motion
Homonuclear Steady State NOE 
54 
60 
54 
60 
W2 
W0 
18 =2+10=12 
20 
90 
100 
78 
90 
24 
36 
=12+12=24 
NOE factor depends on W2, W0
NOE Difference Spectrum 
(NOEdif)
Red: Saturated peak 
Black: NOE affected peak
1D Homonuclear Transient NOE 
180o 
A single spin is inverted and the spin system response is 
read using a 90° pulse after a “mixing” time delay of variable 
duration. In the transient mode, the NOE builds up due to 
cross-relaxation of nearby spins by the inverted spin as the 
entire spin system. 
81 
90 
90 
100 
88 
85 
Neither have to be steady 
Nor have to be equilibrium 
R1 
R1 
R1 
90 
100 
81 
90 
W2 
W0 
98 
90
NOE: Essence 
Whenever the polarization of one of two coupled spins 
deviates from its equilibrium value, the polarization of 
the other spin is affected by cross relaxations. The 
NOE factor (the extent that the polarization of the 
unperturbed spin is affected) depends on cross 
relaxation rates and longitudinal relaxation rates. 
N 
S 
N 
S 
r
When the distance between spins A and B is smaller than ~ 5 Å, NOE 
cross peaks are observable. 
A 
B
2 3 1 
10 5 8 7 4 6 9 
3 
1 5 2 
4 
6 
7 8 
9 
10
3 
1 5 2 
4 
6 
7 8 
9 10 
2 3 1 
10 5 8 7 4 6 9
1D Homonucelar ROE 
180o 90o 
A single transition is inverted using a selective 180° pulse (along the x axis), and 
then a hard 90° x pulse is immediately applied to the spin system. 
This has the effect of placing the “inverted” magnetization along the -y axis while 
the rest of the magnetization is aligned along +y. Then, a low-power rectangular 
pulse is applied long the y-axis. 
This pulse is applied parallel to the magnetization (in the rotating frame) and effects 
no net rotation. Instead, it “locks” the magnetization along the y axis, and is referred 
to as a spin lock pulse. The magnetization is said to be spin locked because 
it doesn’t precess about B0, but the spins now precess aboutB1(the spin lock pulse). 
Therefore, under these conditions, the magnetization can be considered to being 
analogous to alignment along the z axis in the presence of B0 alone. 
Finally, the spins will relax towards a new equilibrium in the presence of B1; 
the characteristic time constant for this decay is called T1ρ forT1in the rotation frame.
ROE Mechanism: 
All relaxation rates are changed 
into rotating frame. 
95 
76 
81 
100 
90 
Y 
Rotating frame Note that both W2 and W0 promote ROE! 
81 
90 
90 
100 
98 
92 
Z 
R1rho 
R1rho 
R1rho 
90 
W2rho 
W0,rho
For homonuclear systems 
2 2 4 
m g J J 
NOE 
II = - +  
s 0 w 
[ (0) 6 (2 0)] 16 p 
2 6 
rII 
2 2 4 
m g J J 
ROE 
II = +  
s 0 w 
[2 (0) 3 (2 0)] 16 p 
2 6 
rII 
W2 promotes NOE while W0 
blocks NOE 
Both W2 and W0 promote ROE
t w 
( ) 2 
5 1 2 2 
c 
J c 
+ 
w t 
=
NOE 
IS IS r 
I 
s h = 
2 2 4 
m g R J J J 
rII I º I = + +  
r 0 w w 
1, [ (0) 3 ( 0) 6 (2 0)] 16 p 
2 6 
2 2 4 
m g J J 
NOE 
II = - +  
s 0 w 
[ (0) 6 (2 0)] 16 p 
2 6 
rII
J w = t c Þ 
2 
t 
2 2 ( ) c 
5 
2 
5 1 
w t 
c 
+
w t 2 
2 2 5 2 
( ) = 2 Þ 
c c 
J c 
w t w t 
5 1 
+
2 2 4 
0 
12 II 
s = 
m  g t c 
2 6 
r 
ROE 
II p
S 
s 
(0) 
h = s < > 
= 
IS g 
I 
NOE 
IS 
I 
z 
(0) 
z 
NOE 
IS 
I 
S 
I 
g 
r 
r 
< >
Some Applications of NOESY 
Sterochemistry 
Polymers 
Hydration of biomolecules 
Structure determination of biomacromolecules
p 
ö çè 
÷ø 
æ 
I S ¾¾¾¾®- I - 
S 
( ) X 
( ) 
Z Z Y Y 
I t I t 
W 
¾¾¾¾®- W + W 
cos( ) sin( ) 
Y I X I 
1 1 
t I 
Z 
S t S t 
- W + W 
( cos( ) sin( )) 
Y S X S 
I t I t 
p 
ö çè 
÷ø 
æ 
¾¾¾¾®- W + W 
cos( ) sin( ) 
Z I X I 
1 1 
X 
S t S t 
- W + W 
( cos( ) sin( )) 
(magnetization transfer) 
Z S X S 
1 1 
t 
I t S t a I S 
- W - W ¾¾¾¾¾¾¾¾¾¾¾® + 
cos( ) cos( ) ( ) 
1 1 
2 
1 1 
2 
1 1 
m 
Z I Z S Z Z
Sterochemistry
CORMA 
CORMA(COmplete Relaxation Matrix Analysis) 
Principle of CORMA 
Example of CORMA
V(τm)=V0 exp(Rτm) 
CORMA
NOE SY of Poly(N-vinyl-carba zole): CHCl3, mixing time:450 ms, 500 MHz, 303 K
Detection of hydration water via observation 
of NOEs from water-protein 
--- G. Otting, E. Liepinsh, K. Wuthrich, Science 1991,254,974 
BPTI 牛胰蛋白抑制劑 
Residues : 58 
Internal water : 4 
Residence times: 
Interior water:10-2- 
10-8s 
Surface water:10-9s
Assignments of water-solute cross peak : 
(a) Direct water-solute NOE 
(hydration water-solute) 
(b) Exchange-relayed NOE 
(solute-solute) 
(c) Chemical exchange 
(bulk water-solute) 
Non-labile 
Labile 
Labile 
--- G. Otting, J. Progr. NMR. Spectrosc. 1997, 31 , 259
2 
3 
Glu1-190 ( mix=0.4 ms ) 
4 
5 
6
Significance to Structure Determination 
rij=(1.78 Å)×(σkl/σij)1/6 
Intensity:640 
Distance:1.78Å 
Intensity:10 
Distance:3.56Å 
A 
B 
C 
D 
E 
F
C-terminal domain of rat Erp29 protein
R1 
C 
H 
C 
O 
i i+1 
N 
H 
R2 
C 
H 
C 
O 
R3 
N C C 
H H O 
N 
H 
C 
H 
C 
R4 
O 
N 
H 
C 
H 
C 
R5 
O 
COSY 
NOESY NOESY 
CTX II: 44-60 
i COSY NOESY (i+1) 
NH-CαH iCαH-(i+1)NH COSY 
(i+1)NH-CαH 
COSY
Inorganic nmr

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Inorganic nmr

  • 1. 無機物理方法(核磁共振部分) The Physical Methods in Inorganic Chemistry (Fall Term, 2004) (Fall Term, 2005) Department of Chemistry National Sun Yat-sen University Chapter 6
  • 2. Nuclear Overhauser Effect (NOE) and NOESY
  • 3. Population Transfer In population manipulations, the most commonly used technique is selective population transfer (SPT):
  • 4. Nuclear Overhauser Effect (NOE) N S N S r The distance between the two spins therefore can be determined by disturbing one of them and observing how other is affected.
  • 6. Nucleus-Electron OE: Mechanism 547 550 547 550 W2 W0 99 =1+5=6 100 995 1000 W2>>W0 577 999 98 520 =422+422=844
  • 7. Nucleus-Electron OE: Mechanism 547 550 547 550 W2 W0 99 =1+5=6 100 995 1000 W2<<W0 990 580 517 107 =-410-410=-820
  • 8.
  • 9. Nucleus-Nucleus OE (Nuclear OENOE): Mechanism 54 60 54 60 W2 W0 18 =2+10=12 20 90 100 W2>>W0 58 90 24 56 =32+32=64
  • 10. Nucleus-Nucleus NOE: Mechanism 54 60 54 60 W2 W0 18 =2+10=12 20 90 100 W2<<W0 90 64 50 24 =-26-26=-52
  • 12. Whenever a polarization or a transition of a spin is inverted or saturated, the polarization or transition of the other spins that are coupled to it will be affected. Perturbation on a Spin (Saturation/Inversion) + Cross Relaxation  The Polarization of Another (Coupled) Spin Is Altered. Depending on the relative magnitudes of W2 and W0, NOE factor can be Larger or smaller than 1 and can be both negative and positive.
  • 13. w0 w2
  • 14. Longitudinal Relaxation Rates Also Affect NOE 2 2 4 m g R J J J rII I º I = + +  r 0 w w 1, [ (0) 3 ( 0) 6 (2 0)] 16 p 2 6 54 60 54 60 W2 W0 18 =2+10=12 20 90 100 W2,W0, R1I, R1S all affect overall NOE. Here W2 > W0, R1I, R1S 80 95 19 34 =15+15=30 R1I R1S R1S Positive NOE
  • 15. Longitudinal Relaxation Rates Also Affect NOE 2 2 4 m g R J J J rII I º I = + +  r 0 w w 1, [ (0) 3 ( 0) 6 (2 0)] 16 p 2 6 54 60 54 60 W2 W0 18 =2+10=12 20 90 100 W2,W0, R1I, R1S all affect overall NOE. Here W2 > W0, R1I, but R1S>W2. 90 96 18 24 =6+6=12 R1I R1S R1S No NOE
  • 16. Longitudinal Relaxation Rates Also Affect NOE 2 2 4 m g R J J J rII I º I = + +  r 0 w w 1, [ (0) 3 ( 0) 6 (2 0)] 16 p 2 6 18 =2+10=12 20 90 100 54 54 W2,W0, R1I, R1S all affect overall NOE. Here W0> W2, but R1I>W0, R1S 95 92 19 22 =3-3=0! 60 60 W2 W0 R1I R1S R1S Negative NOE
  • 17. Relaxation Rates and Motion logW W2 log( w t ) 0 c W0 W1 -4 -3 -2 -1 0 1 2 3 4 For slow motions, W0 is dominant and NOE tends to negative. Fast motion Slow motion
  • 18.
  • 19. Homonuclear Steady State NOE 54 60 54 60 W2 W0 18 =2+10=12 20 90 100 78 90 24 36 =12+12=24 NOE factor depends on W2, W0
  • 20.
  • 21.
  • 22.
  • 24.
  • 25.
  • 26.
  • 27.
  • 28. Red: Saturated peak Black: NOE affected peak
  • 29.
  • 30.
  • 31. 1D Homonuclear Transient NOE 180o A single spin is inverted and the spin system response is read using a 90° pulse after a “mixing” time delay of variable duration. In the transient mode, the NOE builds up due to cross-relaxation of nearby spins by the inverted spin as the entire spin system. 81 90 90 100 88 85 Neither have to be steady Nor have to be equilibrium R1 R1 R1 90 100 81 90 W2 W0 98 90
  • 32. NOE: Essence Whenever the polarization of one of two coupled spins deviates from its equilibrium value, the polarization of the other spin is affected by cross relaxations. The NOE factor (the extent that the polarization of the unperturbed spin is affected) depends on cross relaxation rates and longitudinal relaxation rates. N S N S r
  • 33.
  • 34. When the distance between spins A and B is smaller than ~ 5 Å, NOE cross peaks are observable. A B
  • 35.
  • 36.
  • 37.
  • 38. 2 3 1 10 5 8 7 4 6 9 3 1 5 2 4 6 7 8 9 10
  • 39. 3 1 5 2 4 6 7 8 9 10 2 3 1 10 5 8 7 4 6 9
  • 40. 1D Homonucelar ROE 180o 90o A single transition is inverted using a selective 180° pulse (along the x axis), and then a hard 90° x pulse is immediately applied to the spin system. This has the effect of placing the “inverted” magnetization along the -y axis while the rest of the magnetization is aligned along +y. Then, a low-power rectangular pulse is applied long the y-axis. This pulse is applied parallel to the magnetization (in the rotating frame) and effects no net rotation. Instead, it “locks” the magnetization along the y axis, and is referred to as a spin lock pulse. The magnetization is said to be spin locked because it doesn’t precess about B0, but the spins now precess aboutB1(the spin lock pulse). Therefore, under these conditions, the magnetization can be considered to being analogous to alignment along the z axis in the presence of B0 alone. Finally, the spins will relax towards a new equilibrium in the presence of B1; the characteristic time constant for this decay is called T1ρ forT1in the rotation frame.
  • 41. ROE Mechanism: All relaxation rates are changed into rotating frame. 95 76 81 100 90 Y Rotating frame Note that both W2 and W0 promote ROE! 81 90 90 100 98 92 Z R1rho R1rho R1rho 90 W2rho W0,rho
  • 42.
  • 43.
  • 44. For homonuclear systems 2 2 4 m g J J NOE II = - +  s 0 w [ (0) 6 (2 0)] 16 p 2 6 rII 2 2 4 m g J J ROE II = +  s 0 w [2 (0) 3 (2 0)] 16 p 2 6 rII W2 promotes NOE while W0 blocks NOE Both W2 and W0 promote ROE
  • 45.
  • 46.
  • 47. t w ( ) 2 5 1 2 2 c J c + w t =
  • 48. NOE IS IS r I s h = 2 2 4 m g R J J J rII I º I = + +  r 0 w w 1, [ (0) 3 ( 0) 6 (2 0)] 16 p 2 6 2 2 4 m g J J NOE II = - +  s 0 w [ (0) 6 (2 0)] 16 p 2 6 rII
  • 49. J w = t c Þ 2 t 2 2 ( ) c 5 2 5 1 w t c +
  • 50. w t 2 2 2 5 2 ( ) = 2 Þ c c J c w t w t 5 1 +
  • 51. 2 2 4 0 12 II s = m  g t c 2 6 r ROE II p
  • 52. S s (0) h = s < > = IS g I NOE IS I z (0) z NOE IS I S I g r r < >
  • 53.
  • 54.
  • 55. Some Applications of NOESY Sterochemistry Polymers Hydration of biomolecules Structure determination of biomacromolecules
  • 56. p ö çè ÷ø æ I S ¾¾¾¾®- I - S ( ) X ( ) Z Z Y Y I t I t W ¾¾¾¾®- W + W cos( ) sin( ) Y I X I 1 1 t I Z S t S t - W + W ( cos( ) sin( )) Y S X S I t I t p ö çè ÷ø æ ¾¾¾¾®- W + W cos( ) sin( ) Z I X I 1 1 X S t S t - W + W ( cos( ) sin( )) (magnetization transfer) Z S X S 1 1 t I t S t a I S - W - W ¾¾¾¾¾¾¾¾¾¾¾® + cos( ) cos( ) ( ) 1 1 2 1 1 2 1 1 m Z I Z S Z Z
  • 57.
  • 58.
  • 59.
  • 60.
  • 62.
  • 63. CORMA CORMA(COmplete Relaxation Matrix Analysis) Principle of CORMA Example of CORMA
  • 65. NOE SY of Poly(N-vinyl-carba zole): CHCl3, mixing time:450 ms, 500 MHz, 303 K
  • 66. Detection of hydration water via observation of NOEs from water-protein --- G. Otting, E. Liepinsh, K. Wuthrich, Science 1991,254,974 BPTI 牛胰蛋白抑制劑 Residues : 58 Internal water : 4 Residence times: Interior water:10-2- 10-8s Surface water:10-9s
  • 67. Assignments of water-solute cross peak : (a) Direct water-solute NOE (hydration water-solute) (b) Exchange-relayed NOE (solute-solute) (c) Chemical exchange (bulk water-solute) Non-labile Labile Labile --- G. Otting, J. Progr. NMR. Spectrosc. 1997, 31 , 259
  • 68. 2 3 Glu1-190 ( mix=0.4 ms ) 4 5 6
  • 69. Significance to Structure Determination rij=(1.78 Å)×(σkl/σij)1/6 Intensity:640 Distance:1.78Å Intensity:10 Distance:3.56Å A B C D E F
  • 70. C-terminal domain of rat Erp29 protein
  • 71. R1 C H C O i i+1 N H R2 C H C O R3 N C C H H O N H C H C R4 O N H C H C R5 O COSY NOESY NOESY CTX II: 44-60 i COSY NOESY (i+1) NH-CαH iCαH-(i+1)NH COSY (i+1)NH-CαH COSY