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Synthesis of p38α MAP
kinase inhibitors
By: Vita Koren (100481835)
Introduction – The MAP kinase Pathway
 Enzymes that catalyze the
transfer of a phosphate
from ATP to the needed
molecule
 Involved in growth,
proliferation,
differentiation and
apoptosis of cells
 Cancer invasion = loss of
control of the above
functions
2
Dhillon, A., Hgan, S., Rath, O. and Kolch, W. (2007). MAP kinase signalling pathways in cancer. Oncogene. 26: 3279-3290
The p38α Component of MAP kinase
p38α------------------
3Roux, P and Blenis, J. (2004). ERK and p38 MAPK-Activated Protein Kinases: a Family of Protein Kinases with Diverse Biological Functions. Microbiol
Mol Biol Rev. 68(2): 320-344
 Activated during the secondary phosphorylation
 Important role in regulation of cytokine production in
response to stress
TNF-α
IL-1β
 Promotes diseases
Rheumatoid Arthritis
Type 1 Diabetes
Cancer
Previously Discovered Inhibitors
 Several inhibitors have been
found
 p38α is sensitive to these
inhibitors at submicromolar
IC50 values
4Alessi, D., Cuenda, A., Cohen, P., Dudley, D. and Saltiel, A. (1995). PD 098059 Is a Specific Inhibitor of the Activation of Mitogen-Activated Protein Kinase
Kinase in Vitro and in Vivo. Biol Chem, 270: 27488-27494
Potency of Experimental Molecule
 Goal: Develop and optimize stable methodology for the preparation
of an initial scaffold which can be applied towards drug development
of modified new p38α MAP kinase inhibitor
5Baur, B., Storch, K., Martz, K., Goettert, M., Richters, A., Rauh, D. and Laufer, S. (2013). Metabolically Stable Dibenzo[b,e]oxepin-11(6H)-ones as
Highly Selective p38 MAP Kinase Inhibitors: Optimizing Anti-Cytokine Activity in Human Whole Blood. MedChem. 8561-8578
vs.
Proposed Synthesis
6
Protection of Alcohol
Reaction TBDMSCl (equiv.) Et3N (equiv.) Yield (%)
1 (air) 1.0 4.0 43
2 (argon) 1.0 4.0 0
3 (air) 0.9 4.5 55
7
Green, T. and Wuts, P. (1999). Protective Groups in Organic Synthesis. Wiley-Interscience, New York, 127-141, 708-711
Reaction TBDMSCl (equiv.) Et3N (equiv.) Yield (%)
1 (air) 1.0 4.0 43
2 (argon) 1.0 4.0 0
3 (air) 0.9 4.5 55
Procedure
8
1H NMR Spectra
9
Oxidation of the Alcohol
10
1. Corey, E. and Suggs, J. (1975). Pyridinium chlorochromate is a readily available, stable reagent, that oxidizes a wide variety of alcohols to carbonyl
compounds with high efficiency. Tetrahedron Lett. 16: 2647-2650
2. Rowlands, G. (2002). Oxidation and Reduction. Sussex. Retrieved from: http://www.massey.ac.nz/~gjrowlan/oxid/alco.pdf
3. Bolm, C., Magnus, A. and Hildebrand, J. (2000). Catalytic Synthesis of Aldehydes and Ketones under Mild Conditions Using TEMPO/Oxone. Organic
Lett. 2(8): 1173-1175
Reaction Reagents
(equiv.)
Solvent Temperature Time Yield (%)
1 Ca(ClO)2 (0.67) MeCN
Acetic acid
H2O
0ºC 1 hr 20
2 MnO2 (1.1) Hexane -10 ºC 3 hrs 0
3 PCC (1.5) DCM r.t 2 hrs 60
1H NMR Spectra
11
Introduction of Phenylacetylene
Reaction Reagents (equiv.) Solvent Temperature Time Yield (%)
1 Phenylacetylene (5.0)
n-butyllithium (5.0)
THF -78ºCrt 2 hrs 0
2 Phenylacetylene (1.3)
Zinc iodide (2.5)
Triethylamine (2.5)
Toluene 80ºC 30 mins 44
12
1.Taylor, C and Bolshan, Y. (2014). Metal- free synthesis of ynones from acyl chlorides and potassium alkynyltrifluoroborate salts. OrgLett. 16(2): 488-491
2.Yuan, J., Wang, J., Zhang, G., Liu, C., Qi, X., Lan, Y., Miller, J., Kropf, A., Bunel, E. and Lei, A. (2015). Bimetallic zinc complex – active species in
coupling of terminal alkynes with aldehydes via nucleophilic addition/ Oppenauer oxidation. Chem Commun. 51: 576-579
1H NMR Spectra
13
Proposed Mechanism
14
More Oxidations
Reaction Reagents
(equiv.)
Solvent Temperature Time Yield (%)
1 PCC (1.5) DCM r.t 2 hrs 65
15Corey, E. and Suggs, J. (1975). Pyridinium chlorochromate is a readily available, stable reagent, that oxidizes a wide variety of alcohols to carbonyl
compounds with high efficiency. Tetrahedron Lett. 16: 2647-2650
13C NMR Spectra
16
Removal of the Protecting Group
17
Fuestro, S., Sancho, A., Acena, J. and Sanz-Cervera, J. (2009). Flurous TBAF: A convenient and selective reagent for fluoride-mediate deprotections. J. Org Chem. 74: 6398-6401
Reaction Reagents (equiv.) Solvent Temperature Time Yield (%)
1 Cs2CO3 (1.0) DMF/H2O 100ºC 1 hr 0
2 TBAF (1.5) DMF r.t 1 hr 0
3 TBAF (2.5) DMF r.t 3 hrs 0
4 HF (1.9) DMF r.t 1 hr 0
5 TBAF (1.1) DMF -10ºC 1 hr 0
6 HF-pyridine DMF r.t 40 mins 0
Conclusion
 Significant progress for the synthesis of initial scaffold for
an inhibitor of p38α MAP kinase has been made
 Protection, oxidation and propargylic alcohol addition was
accomplished
 The compound has never been synthesized and needs to be
optimized
18
Future Direction
19
2 Steps 4 Steps
Acknowledgements
 A huge thank you to my supportive and
insightful supervisor Dr. Bolshan for all his help
inside and outside the laboratory
 Thank you to Kayla for always answering my
questions and providing great advice
 Pleasure working alongside all of my lab
companions: Ifedi, Stefan, Dylan and William
20

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presentation FINAL - Modified

  • 1. Synthesis of p38α MAP kinase inhibitors By: Vita Koren (100481835)
  • 2. Introduction – The MAP kinase Pathway  Enzymes that catalyze the transfer of a phosphate from ATP to the needed molecule  Involved in growth, proliferation, differentiation and apoptosis of cells  Cancer invasion = loss of control of the above functions 2 Dhillon, A., Hgan, S., Rath, O. and Kolch, W. (2007). MAP kinase signalling pathways in cancer. Oncogene. 26: 3279-3290
  • 3. The p38α Component of MAP kinase p38α------------------ 3Roux, P and Blenis, J. (2004). ERK and p38 MAPK-Activated Protein Kinases: a Family of Protein Kinases with Diverse Biological Functions. Microbiol Mol Biol Rev. 68(2): 320-344  Activated during the secondary phosphorylation  Important role in regulation of cytokine production in response to stress TNF-α IL-1β  Promotes diseases Rheumatoid Arthritis Type 1 Diabetes Cancer
  • 4. Previously Discovered Inhibitors  Several inhibitors have been found  p38α is sensitive to these inhibitors at submicromolar IC50 values 4Alessi, D., Cuenda, A., Cohen, P., Dudley, D. and Saltiel, A. (1995). PD 098059 Is a Specific Inhibitor of the Activation of Mitogen-Activated Protein Kinase Kinase in Vitro and in Vivo. Biol Chem, 270: 27488-27494
  • 5. Potency of Experimental Molecule  Goal: Develop and optimize stable methodology for the preparation of an initial scaffold which can be applied towards drug development of modified new p38α MAP kinase inhibitor 5Baur, B., Storch, K., Martz, K., Goettert, M., Richters, A., Rauh, D. and Laufer, S. (2013). Metabolically Stable Dibenzo[b,e]oxepin-11(6H)-ones as Highly Selective p38 MAP Kinase Inhibitors: Optimizing Anti-Cytokine Activity in Human Whole Blood. MedChem. 8561-8578 vs.
  • 7. Protection of Alcohol Reaction TBDMSCl (equiv.) Et3N (equiv.) Yield (%) 1 (air) 1.0 4.0 43 2 (argon) 1.0 4.0 0 3 (air) 0.9 4.5 55 7 Green, T. and Wuts, P. (1999). Protective Groups in Organic Synthesis. Wiley-Interscience, New York, 127-141, 708-711 Reaction TBDMSCl (equiv.) Et3N (equiv.) Yield (%) 1 (air) 1.0 4.0 43 2 (argon) 1.0 4.0 0 3 (air) 0.9 4.5 55
  • 10. Oxidation of the Alcohol 10 1. Corey, E. and Suggs, J. (1975). Pyridinium chlorochromate is a readily available, stable reagent, that oxidizes a wide variety of alcohols to carbonyl compounds with high efficiency. Tetrahedron Lett. 16: 2647-2650 2. Rowlands, G. (2002). Oxidation and Reduction. Sussex. Retrieved from: http://www.massey.ac.nz/~gjrowlan/oxid/alco.pdf 3. Bolm, C., Magnus, A. and Hildebrand, J. (2000). Catalytic Synthesis of Aldehydes and Ketones under Mild Conditions Using TEMPO/Oxone. Organic Lett. 2(8): 1173-1175 Reaction Reagents (equiv.) Solvent Temperature Time Yield (%) 1 Ca(ClO)2 (0.67) MeCN Acetic acid H2O 0ºC 1 hr 20 2 MnO2 (1.1) Hexane -10 ºC 3 hrs 0 3 PCC (1.5) DCM r.t 2 hrs 60
  • 12. Introduction of Phenylacetylene Reaction Reagents (equiv.) Solvent Temperature Time Yield (%) 1 Phenylacetylene (5.0) n-butyllithium (5.0) THF -78ºCrt 2 hrs 0 2 Phenylacetylene (1.3) Zinc iodide (2.5) Triethylamine (2.5) Toluene 80ºC 30 mins 44 12 1.Taylor, C and Bolshan, Y. (2014). Metal- free synthesis of ynones from acyl chlorides and potassium alkynyltrifluoroborate salts. OrgLett. 16(2): 488-491 2.Yuan, J., Wang, J., Zhang, G., Liu, C., Qi, X., Lan, Y., Miller, J., Kropf, A., Bunel, E. and Lei, A. (2015). Bimetallic zinc complex – active species in coupling of terminal alkynes with aldehydes via nucleophilic addition/ Oppenauer oxidation. Chem Commun. 51: 576-579
  • 15. More Oxidations Reaction Reagents (equiv.) Solvent Temperature Time Yield (%) 1 PCC (1.5) DCM r.t 2 hrs 65 15Corey, E. and Suggs, J. (1975). Pyridinium chlorochromate is a readily available, stable reagent, that oxidizes a wide variety of alcohols to carbonyl compounds with high efficiency. Tetrahedron Lett. 16: 2647-2650
  • 17. Removal of the Protecting Group 17 Fuestro, S., Sancho, A., Acena, J. and Sanz-Cervera, J. (2009). Flurous TBAF: A convenient and selective reagent for fluoride-mediate deprotections. J. Org Chem. 74: 6398-6401 Reaction Reagents (equiv.) Solvent Temperature Time Yield (%) 1 Cs2CO3 (1.0) DMF/H2O 100ºC 1 hr 0 2 TBAF (1.5) DMF r.t 1 hr 0 3 TBAF (2.5) DMF r.t 3 hrs 0 4 HF (1.9) DMF r.t 1 hr 0 5 TBAF (1.1) DMF -10ºC 1 hr 0 6 HF-pyridine DMF r.t 40 mins 0
  • 18. Conclusion  Significant progress for the synthesis of initial scaffold for an inhibitor of p38α MAP kinase has been made  Protection, oxidation and propargylic alcohol addition was accomplished  The compound has never been synthesized and needs to be optimized 18
  • 20. Acknowledgements  A huge thank you to my supportive and insightful supervisor Dr. Bolshan for all his help inside and outside the laboratory  Thank you to Kayla for always answering my questions and providing great advice  Pleasure working alongside all of my lab companions: Ifedi, Stefan, Dylan and William 20

Editor's Notes

  1. - Enzyme needed to catalyze transfer of phosphate group from ATP to molecule - growth, proliferation, apoptosis etc. Activated three times, refer to picture - Cancer = loss of control = need drug resistance - Overall = GF  phosphorylate RTK  adaptor protein recognizes activity  activate GPCR RAS  energized  RAF, MEF, ERK  nucleus  transcription factors
  2. 38 activate during second phosphorylation Can activate substrates downstream, like ones that induce chromatin remodeling of genes Physical/chemical stress like oxidation, UV, hypoxia = 38 wakes up Makes cytokines TGF alpha and IL-1beta TGF activate next MAPK but also cell proliferation and growth Inflammatory diseases and autoimmune disease examples
  3. Several inhibitors have been found p38α is sensitive to these inhibitors at submicromolar IC50 values
  4. The overall objective of this research is to explore the formation of a modified new p38α MAP kinase inhibitor Specifically, the goal of this project is to develop and optimize a stable methodology for the preparation of an initial scaffold (meaning skeleton) which can then be applied towards drug development We are interested in this previous one New compound would be considered more flexible due to it having a carbon bond between the cycloheptane ring and one of the aromatic rings Binding pocket shows derivatized one of previous one that fits in pocket so think mine would fit too NEED TO EDIT, ADD POCKET WITH MINE
  5. Summarized steps of how wanting to get to the goal Take commercially available dialcohol Add protecting group Convert to aldehyde Attach right side Free alcohol again to close ring Potency is not known yet, molecule not synthesized yet
  6. - 1,2-benzenedimethanol as new plan Need protective group of 1 alcohol Emphasize what part is TBDSM chloride Decided to try argon conditions, not work cause TBDMS need aqueous base ANIMATION = Modified tiny bit because this was more stable
  7. First see my rxn going, this one was at room temperature TLC showing SM spot and rxn spot under UV light Column is essentially sand and push compound through Separate into test tubes based on polarity Its like the TLC where one spot is running higher than the other Shows UV peak
  8. What is an H NMR
  9. Take step back to aldehyde 1. Hypochlorite need phase transfer catalyst to carry hypochlorite ion from solid to liquid phase fully Also can raise temp cause of chlorine gas 2. MnO2 usually involved in radical reactions so alcohol was somehow removed 3. MgSO4 before NaCl = removed side products and reduce chromium salts
  10. New plan = phenylacetylene for options Tried n-butyllithium like Cassandra b/c similar compound Bulky substituent cause side reactivity ZnI2 good b/c Zn is a lewis acid Bimetallic promote C-C bond formation Addition of a terminal alkyne to the aldehyde was sufficiently successful by obtaining a yield of 44%
  11. Proposed mechanistic pathway for the promotion of a C-C bond between a terminal alkyne and an aldehyde Zinc is known to easily replace H on acetylenes Generate HI and Et3N base takes care of that Acetylene is then more reactive and can attack the carbonyl carbon Benzylic carbocation will be formed which can easily lose a proton to a base such as trimethylamine Propargylic alcohol is obtained once the compound is protonated
  12. Successful like first time Acidic condition prevent further oxidation then needed
  13. Usually use acid or fluoride TBS has strong resistance under basic conditions, so cesium carbonate wasn’t a strong enough base Fluoride should have worked because Si-F bond is stronger than Si-O But being super bulky with propargyl ketone = so resistant HF acidic and fluoride but too strong because substituent right beside Tried colder temp and HF pyridine, still doesn’t work
  14. Significant progress for the synthesis of initial scaffold for an inhibitor of p38α MAP kinase Protection, oxidation and propargylic alcohol addition was accomplished The compound has never been synthesized and needs to be optimized Report whole yield/ mass
  15. Deprotection = HF-pyridine complex in pyridine because more mild and won’t bother the ring Cyclization = Would activate alcohol and have H leave so wanting to close ring Now have derivative of the molecule and can test potency again Skip first 2 steps because they do not change Attack aldehyde with various phenylacetylenes can see its interaction in binding pocket as final product
  16. A huge thank you to my supportive and insightful supervisor Dr. Bolshan for all his help inside and out the laboratory Thank you to Ms. Fisher for always answering my questions and providing great advice Pleasure working alongside all of my lab companions: Ifedi, Stefan, Dylan and William