2. Introduction – The MAP kinase Pathway
Enzymes that catalyze the
transfer of a phosphate
from ATP to the needed
molecule
Involved in growth,
proliferation,
differentiation and
apoptosis of cells
Cancer invasion = loss of
control of the above
functions
2
Dhillon, A., Hgan, S., Rath, O. and Kolch, W. (2007). MAP kinase signalling pathways in cancer. Oncogene. 26: 3279-3290
3. The p38α Component of MAP kinase
p38α------------------
3Roux, P and Blenis, J. (2004). ERK and p38 MAPK-Activated Protein Kinases: a Family of Protein Kinases with Diverse Biological Functions. Microbiol
Mol Biol Rev. 68(2): 320-344
Activated during the secondary phosphorylation
Important role in regulation of cytokine production in
response to stress
TNF-α
IL-1β
Promotes diseases
Rheumatoid Arthritis
Type 1 Diabetes
Cancer
4. Previously Discovered Inhibitors
Several inhibitors have been
found
p38α is sensitive to these
inhibitors at submicromolar
IC50 values
4Alessi, D., Cuenda, A., Cohen, P., Dudley, D. and Saltiel, A. (1995). PD 098059 Is a Specific Inhibitor of the Activation of Mitogen-Activated Protein Kinase
Kinase in Vitro and in Vivo. Biol Chem, 270: 27488-27494
5. Potency of Experimental Molecule
Goal: Develop and optimize stable methodology for the preparation
of an initial scaffold which can be applied towards drug development
of modified new p38α MAP kinase inhibitor
5Baur, B., Storch, K., Martz, K., Goettert, M., Richters, A., Rauh, D. and Laufer, S. (2013). Metabolically Stable Dibenzo[b,e]oxepin-11(6H)-ones as
Highly Selective p38 MAP Kinase Inhibitors: Optimizing Anti-Cytokine Activity in Human Whole Blood. MedChem. 8561-8578
vs.
10. Oxidation of the Alcohol
10
1. Corey, E. and Suggs, J. (1975). Pyridinium chlorochromate is a readily available, stable reagent, that oxidizes a wide variety of alcohols to carbonyl
compounds with high efficiency. Tetrahedron Lett. 16: 2647-2650
2. Rowlands, G. (2002). Oxidation and Reduction. Sussex. Retrieved from: http://www.massey.ac.nz/~gjrowlan/oxid/alco.pdf
3. Bolm, C., Magnus, A. and Hildebrand, J. (2000). Catalytic Synthesis of Aldehydes and Ketones under Mild Conditions Using TEMPO/Oxone. Organic
Lett. 2(8): 1173-1175
Reaction Reagents
(equiv.)
Solvent Temperature Time Yield (%)
1 Ca(ClO)2 (0.67) MeCN
Acetic acid
H2O
0ºC 1 hr 20
2 MnO2 (1.1) Hexane -10 ºC 3 hrs 0
3 PCC (1.5) DCM r.t 2 hrs 60
15. More Oxidations
Reaction Reagents
(equiv.)
Solvent Temperature Time Yield (%)
1 PCC (1.5) DCM r.t 2 hrs 65
15Corey, E. and Suggs, J. (1975). Pyridinium chlorochromate is a readily available, stable reagent, that oxidizes a wide variety of alcohols to carbonyl
compounds with high efficiency. Tetrahedron Lett. 16: 2647-2650
17. Removal of the Protecting Group
17
Fuestro, S., Sancho, A., Acena, J. and Sanz-Cervera, J. (2009). Flurous TBAF: A convenient and selective reagent for fluoride-mediate deprotections. J. Org Chem. 74: 6398-6401
Reaction Reagents (equiv.) Solvent Temperature Time Yield (%)
1 Cs2CO3 (1.0) DMF/H2O 100ºC 1 hr 0
2 TBAF (1.5) DMF r.t 1 hr 0
3 TBAF (2.5) DMF r.t 3 hrs 0
4 HF (1.9) DMF r.t 1 hr 0
5 TBAF (1.1) DMF -10ºC 1 hr 0
6 HF-pyridine DMF r.t 40 mins 0
18. Conclusion
Significant progress for the synthesis of initial scaffold for
an inhibitor of p38α MAP kinase has been made
Protection, oxidation and propargylic alcohol addition was
accomplished
The compound has never been synthesized and needs to be
optimized
18
20. Acknowledgements
A huge thank you to my supportive and
insightful supervisor Dr. Bolshan for all his help
inside and outside the laboratory
Thank you to Kayla for always answering my
questions and providing great advice
Pleasure working alongside all of my lab
companions: Ifedi, Stefan, Dylan and William
20
Editor's Notes
- Enzyme needed to catalyze transfer of phosphate group from ATP to molecule- growth, proliferation, apoptosis etc.
Activated three times, refer to picture- Cancer = loss of control = need drug resistance- Overall = GF phosphorylate RTK adaptor protein recognizes activity activate GPCR RAS energized RAF, MEF, ERK nucleus transcription factors
38 activate during second phosphorylation
Can activate substrates downstream, like ones that induce chromatin remodeling of genes
Physical/chemical stress like oxidation, UV, hypoxia = 38 wakes up
Makes cytokines TGF alpha and IL-1beta
TGF activate next MAPK but also cell proliferation and growth
Inflammatory diseases and autoimmune disease examples
Several inhibitors have been found
p38α is sensitive to these inhibitors at submicromolar IC50 values
The overall objective of this research is to explore the formation of a modified new p38α MAP kinase inhibitor
Specifically, the goal of this project is to develop and optimize a stable methodology for the preparation of an initial scaffold (meaning skeleton) which can then be applied towards drug development
We are interested in this previous one
New compound would be considered more flexible due to it having a carbon bond between the cycloheptane ring and one of the aromatic rings
Binding pocket shows derivatized one of previous one that fits in pocket so think mine would fit too
NEED TO EDIT, ADD POCKET WITH MINE
Summarized steps of how wanting to get to the goal
Take commercially available dialcohol
Add protecting group
Convert to aldehyde
Attach right side
Free alcohol again to close ring
Potency is not known yet, molecule not synthesized yet
- 1,2-benzenedimethanol as new plan
Need protective group of 1 alcohol
Emphasize what part is TBDSM chloride
Decided to try argon conditions, not work cause TBDMS need aqueous base
ANIMATION = Modified tiny bit because this was more stable
First see my rxn going, this one was at room temperature
TLC showing SM spot and rxn spot under UV light
Column is essentially sand and push compound through
Separate into test tubes based on polarity
Its like the TLC where one spot is running higher than the other
Shows UV peak
What is an H NMR
Take step back to aldehyde
1. Hypochlorite need phase transfer catalyst to carry hypochlorite ion from solid to liquid phase fully
Also can raise temp cause of chlorine gas
2. MnO2 usually involved in radical reactions so alcohol was somehow removed
3. MgSO4 before NaCl = removed side products and reduce chromium salts
New plan = phenylacetylene for options
Tried n-butyllithium like Cassandra b/c similar compound
Bulky substituent cause side reactivity
ZnI2 good b/c Zn is a lewis acid
Bimetallic promote C-C bond formation
Addition of a terminal alkyne to the aldehyde was sufficiently successful by obtaining a yield of 44%
Proposed mechanistic pathway for the promotion of a C-C bond between a terminal alkyne and an aldehyde
Zinc is known to easily replace H on acetylenes
Generate HI and Et3N base takes care of that
Acetylene is then more reactive and can attack the carbonyl carbon
Benzylic carbocation will be formed which can easily lose a proton to a base such as trimethylamine
Propargylic alcohol is obtained once the compound is protonated
Successful like first time
Acidic condition prevent further oxidation then needed
Usually use acid or fluoride
TBS has strong resistance under basic conditions, so cesium carbonate wasn’t a strong enough base
Fluoride should have worked because Si-F bond is stronger than Si-O
But being super bulky with propargyl ketone = so resistant
HF acidic and fluoride but too strong because substituent right beside
Tried colder temp and HF pyridine, still doesn’t work
Significant progress for the synthesis of initial scaffold for an inhibitor of p38α MAP kinase
Protection, oxidation and propargylic alcohol addition was accomplished
The compound has never been synthesized and needs to be optimized
Report whole yield/ mass
Deprotection = HF-pyridine complex in pyridine because more mild and won’t bother the ring
Cyclization = Would activate alcohol and have H leave so wanting to close ring
Now have derivative of the molecule and can test potency again
Skip first 2 steps because they do not change
Attack aldehyde with various phenylacetylenes
can see its interaction in binding pocket as final product
A huge thank you to my supportive and insightful supervisor Dr. Bolshan for all his help inside and out the laboratory
Thank you to Ms. Fisher for always answering my questions and providing great advice
Pleasure working alongside all of my lab companions: Ifedi, Stefan, Dylan and William