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UNIVERSITY OF HORTICULTURAL SCIENCES, BAGALKOT
3rd SEMINAR
Strategies for controlling viral diseases in ornamental
crops
Takhellambam Henny Chanu
UHS18PGD253
Department of FLA
INTRODUCTION
SOURCE OF INFECTION
MANAGEMENT
STRATEGIES
CONTROL OF VECTORS
CASE STUDIES
CONCLUSION
INTRODUCTION
➢ Nucleic acid surrounded by a protein coat
➢ Virus: set of one or more nucleic acid template molecule,
normally encased in protective protein coat (Mathews, 1981)
➢ Obligate intracellular parasites
➢ Small infectious agent that replicates only inside the
living cells of other organisms
➢ Sub microscopic
➢ Transmit – vectors
➢ 1st - TMV (Tobacco mosaic virus) – discover
4/22/2021 Department of FLA 5
Types
Type of genome Virus
ss RNA Tobacco mosaic virus, Carnation latent virus,
Carnation mottle virus, Carnation ring spot virus,
Cucumber mosaic virus
ds RNA Rice dwarf virus, Reovirus
ss DNA Bean yellow mosaic virus, Banana bunchy top
virus
ds DNA Cauliflower mosaic virus, Petunia vein clearing
virus
4/22/2021 Department of FLA 6
Katoch et al., 2002
Viruses of flower crops
Crops Viruses
Carnation Carnation mottle, Carnation necrotic fleck, Carnation ringspot,
Carnation streak virus, Impatiens necrotic spot virus
Cosmos Beet curly top virus, Tomato spotted wilt virus (Raikhy et al., 2006)
Dahlia Cucumber mosaic virus, Dahlia mosaic virus, Impatiens necrotic spot
virus, Tomato spotted wilt virus
Gladiolus Bean yellow mosaic virus, Tobacco ringspot virus, Tomato spotted wilt
virus, Cucumber mosaic virus (Katoch et al., 2002)
Petunia Impatiens necrotic spot virus, Petunia mosaic virus, TSWV
4/22/2021 Department of FLA 7
Gerbera Tomato spotted wilt virus, CMV (Verma et al., 2004)
Lily Cucumber mosaic virus, Lily mottle virus, Lily streak virus,
Tomato spotted wilt virus (Ram et al., 1999)
Marigold Tomato spotted wilt virus
Chrysanthemum Tomato aspermy virus , Chrysanthemum mosaic virus, Impatiens
necrotic spot virus, Tomato spotted wilt virus, Chrysanthemum
stunt viroid (Verma et al., 2003)
http://www.ipm.ucdavis.edu
http://www.ipm.ucdavis.edu
Viruses of flower crops
4/22/2021 Department of FLA 8
VIRUS VECTORS HOSTS
Bean yellow mosaic virus Aphids Gladiolus, Sweet pea
Beet curly top virus Leafhoppers Cosmos, Geranium,
Petunia, Strawflower,
Stock, Viola, Zinnia
Cauliflower mosaic virus Aphids Stock
Cucumber mosaic virus Aphids Begonia, Calendula, China
aster, Dahlia, Gerbera,
Gladiolus, Primula
Prunus necrotic ringspot
virus
Grafting; Pollen Rose
Tobacco mosaic virus Mechanical Delphinium, Petunia,
Phlox, Wisteria
Impatiens necrotic spot
virus and TSWV
Thrips Begonia, Calendula,
Chrysanthemum,
Coreopsis, Dahlia, Gerbera,
Gladiolus
http://www.ipm.ucdavis.edu
Department of FLA 9
4/22/2021
Diseases
Diseases
Anthurium (Groundnut bud necrosis virus)
Anthurium (Groundnut bud necrosis virus)
Gladiolus (BYMV)
Gladiolus (BYMV) Chrysanthemum
(CSVd)
Chrysanthemum
(CSVd)
Rose (Emaravirus sp.)
Rose (Emaravirus sp.)
Crossandra (TLCV)
Crossandra (TLCV)
Orchid (cymMV)
Orchid (cymMV)
10
4/22/2021
SOURCE OF
INFECTION
Weeds
Debris and
crop residue
Tools and
personnels
Seeds/
propagation
stock plant
4/22/2021 Department of FLA 11
MANAGEMENT STRATEGIES
Cultural methods
Control of vectors
Biological control
Cross-protection
Transgenic
resistance
4/22/2021 Department of FLA 12
CULTURAL METHODS
➢ Use of Virus Free Planting Materials
➢ (a) occurrence of infection as soon as possible in young developing
seedling
➢ (b) infected seedling act as source of initial virus inoculum for subsequent
further spread.
➢ Avoidance of Collateral Hosts and Volunteers
➢ Wherever healthy planting materials were used, the virus infection comes
from the weed hosts or other infected crops
➢ Roguing - main crop is the primary/sole source of virus infection - not effective
the virus has wider host range, the spread is relatively fast.
➢ Plant density - higher planting density lessens the number of infections per unit
area
4/22/2021 Department of FLA 13
Tripathi and Verma, 2017
➢ Trap crop and barrier crops – fast growing and taller than the
main crop and it should not be susceptible to the viruses and
their vectors of the main crop – maize, marigold (Rose -
Pelargonium geraniums as trap crop )
➢ Use of plastic mulch – avoid landing of insect on crop plants,
minimize; UV, IR light
➢ Use of physical barriers – fine mesh screen
➢ Sowing/Planting Dates - avoid - highest number of
viruliferous insect vectors. Planting time – virus migration
➢ Remove plant debris from plastic tunnel houses and
glasshouses
➢ Treatment of implements with 3% trisodium orthophosphate
4/22/2021 Department of FLA 14
Tripathi and Verma, 2017
Methods for obtaining virus free stocks
Thermotherapy
Electrotherapy
Meristem
culture
Chemotherapy
Cryotherapy
Virus free
stocks
Naturally
occurring virus
free material
Department of FLA 15
4/22/2021
(A) MERISTEM TIP CULTURE:
➢ An efficient tool for regeneration, elimination of viruses from infected plants
and production of virus-free seed material
➢ Absence of virus in meristem - high metabolic activities, usually accompanied
by elevated endogenous auxin content in shoot apices, lack of vascular system
and virus inactivating system may inhibit virus multiplication
➢ The production of virus-free plants - determination of optimal size range of
meristem/shoot tips (0.3-1.5 mm) and a high rate of plant regeneration
➢ Morel and Martin (1952) – eliminate viruses from dahlia using meristem
culture
➢ Number of virus-free plantlets obtainable is inversely proportional to the size
of the cultured tips (Faccioli and Marani,1998)
Bhat et al., 2020
Department of FLA 16
4/22/2021
Department of FLA 17
4/22/2021 Bhat et al., 2020
Scientia Horticulturae, 2009, 119: 108–112
Elimination of mixed infection of Cucumber mosaic and
Tomato aspermy virus from Chrysanthemum morifolium
Ramat. cv. Pooja by shoot meristem culture
Kumar, S., Khan, M.S., Raj, S.K. and Sharma, A.K.
➢ Eliminate CMV and TAV at a time by culturing shoot meristems of the
naturally infected chrysanthemum cv. Pooja
➢ To produce virus-free chrysanthemum plants
18
4/22/2021 Department of FLA
MATERIALS AND METHODS
➢ Naturally infected C. morifolium Ramat. cv. Pooja meristem size 0.3 mm -
culture on MS medium
➢ 25 ± 2°C – 16/8 hr photoperiod - forthnightly
➢ DAC-ELISA - performed by using antiserum of CMV (PVAS 242a) and TAV
(PVAS 24)
➢ RT-PCR using specific primers of CMV(AM180922 and AM180923) &
(J566128), (AJ566129) primer for TAV
➢ RT-PCR Process:-denaturation at 94 oC for 5 min there were 25 cycles of
amplification with denaturation at 94 for 1 min, annealing at 52 oC for 1min
(CMV) and 56 oC for 1 min (TAV) and extension at 72 oC for 1 min following
the final extension of 10 min at 72 °C.
Department of FLA 19
4/22/2021 Kumar et al., 2009
Figure 1: Gel electrophoresis of RT-PCR products showing 657 bp
amplicons in naturally infected chrysanthemum samples
obtained by CMV-specific primers (a) and TAV specific primers
(b). PCR products from naturally infected and healthy
chrysanthemum plants.
Department of FLA 20
4/22/2021 Kumar et al., 2009
Figure 2: Optimization of growth regulator concentrations(NAA and BAP)
supplemented to MS media with 0.3 mm shoot meristem explants of
healthy chrysanthemum Pooja cultivar
Department of FLA 21
4/22/2021 Kumar et al., 2009
Figure 3 (a and b): Multiple shoots
regenerated from the mild callus at
the end of excised shoot meristem in
20–25 days
Figure 3 (c): Well developed
shootlets excised after 55–60 days
and positioned onto rooting medium
which developed roots after 6 - 7
days
Figure 3 (d): Acclimatized
chrysanthemum cv. Pooja plants in
glasshouse
Department of FLA 22
4/22/2021 Kumar et al., 2009
Table 1: Indexing for CMV- and TAV-free plants from Chrysanthemum cv. Pooja
shoot meristems
Table 2: Performance of in vitro-raised virus-free chrysanthemum cv. Pooja plants as
compared to diseased plants with respect to growth parameters
Department of FLA 23
4/22/2021
Virus-free plants Percentage of virus-free plants (virus-free/total) obtained as tested by
ELISA RT-PCR Total
CMV-free 81.2% (26/32) 84.0% (21/25) 65.6% (21/32)
TAV-free 87.5% (28/32) 88.0% (22/25) 68.7% (22/32)
Both CMV and TAV-free 78.1% (25/32) 84.0% (21/25) 65.6% (21/32)
Sl.
No.
Explant type Growth parameters
Plant height
(cm)
No. of
branches per
plant
Length of
branch (cm)
No. of
flowers per
plant
1. CMV and TAV-free 34.40 ± 1.58* 9.05 ± 0.39* 26.60 ± 0.75* 38.05 ± 0.94*
2. Control (doubly infected
plant)
17.33 ± 0.58* 4.33 ± 0.33* 12.00 ± 1.35* 24.33 ± 0.61*
3. Increase in performance over
control, % (infected)
50.20 52.15 34.88 36.05
Kumar et al., 2009
INFERENCE
• Shoot meristem culture method – generate TAV-free and CMV-free
chrysanthemums
• Reasons for virus elimination: growth regulators action particularly
cytokinin- loss of enzymes necessary for viral replication, RNA
degradation due to cell injury
Department of FLA 24
4/22/2021
(B) THERMOTHERAPY:
➢ 35–42 °C for 4–6 weeks is applied to the target plant, depending on virus type
and plant species and virus-host combination
➢ Higher the temperature and the longer the exposure duration are, the higher the
virus-eradication frequency is.
➢ Kassanis (1949) eliminate PLRV - potato tubers – 37ºC and 25 days
➢ Mechanisms –
➢ (1) Prevent virus movement toward the meristematic cells of the treated shoots
- result in production of larger virus free areas of the infected shoot tips, thus
helping virus eradication
➢ (2) Inhibit viral replication or caused virus RNA degradation
➢ (3) Biogenesis of vsiRNAs and inhibited viral RNA accumulation, by
upregulating the expression of key genes in the RNA silencing pathway
➢ Virus-free - carnation, narcissus, chrysanthemum, geranium
4/22/2021 Department of FLA 25
Wang et al., 2018
Table 3: Some examples of in vitro thermotherapy followed by shoot tip culture
for virus eradication
4/22/2021 Department of FLA 26
Wang et al., 2018
Plant species and cultivars
or genotypes
Viruses Temperatur
e and
duration
Size of
shoot
tips (in
mm)
Virus-free
frequency
Chrysanthemum ‘Regol Time’ Chrysanthemum B
virus (CVB)
38 °C, 30
days
0.3–1.0 12
Lilium × elegans geno- types
409 and 599
Lilium symptomless
virus (LSV)
35 °C, 42
days
0.3 100
Lilium Asiatic hybrid
‘Vis- conti’, and LA hybrids
‘Fangio’ and ‘Lacorno’
LSV, lily mottle virus
(LMoV) and
cucumber mosaic
virus (CMV)
35 °C, 5
weeks
NS 100 (LSV)
100 (CMV)
100 (LMoV
Begonia Prunus necrotic
ringspot virus
(PNRSV)
38 °C/22 °C,
(day/night),
35 days
2-3 cm 37.5
(C) CHEMOTHERAPY:
➢ Incorporation of antiviral compounds into explant and meristem culture media
to obtain higher percentage of virus free progeny plants
➢ Synthetic nucleoside : tiazofurin, selenazofurin ,benzamide riboside
➢ Non-nucleosides : micophenolic acid were tested against CMV
➢ Antibiotic – streptothricin, terramycin, achromycin, agrimycin, aureomycin
hydrochloride; dyes - malachite green and methylene blue; nicotinic acid,
amino acids, IAA, 2, 4-D, hydroquinone
➢ Ribavirin/ virazole - 9 families
➢ Limitations - narrow antiviral spectrum, ineffectiveness against the latent
virus, development of drug-resistant mutants and toxic side effects
4/22/2021 Department of FLA 27
Erik, 1996
(D) ELECTROTHERAPY:
➢ Degrade viral
nucleoprotein and
eliminate its virulence
➢ First - eliminate Potato
virus X (PVX) from
potato -15 mA for 5
min - 60–100 %
elimination of PVX
(Lozoya-Saldana et
al., 1996)
4/22/2021 Department of FLA 28
Figure 4: Electrotherapy treatments steps and
equipment used to produce virus-free plants
Natrium
chloride solution
Biotech, 2019, 3(9): 153-162
Elimination of Bean yellow mosaic virus from infected
cormels of three cultivars of gladiolus using thermo-, electro-
and chemotherapy
Kaur, C., Raj, R., Kumar, S., Purshottam, D.K., Agrawal, L., Chauhan, P.S. and Raj,
S.K.
Objective:- to establish an effective and facile BYMV management strategy for
quality improvement of gladiolus.
Department of FLA 29
4/22/2021
MATERIAL AND METHODS
➢ CSIR-NBRI, Lucknow
➢ Aldebaran, Tiger Flame and Vink’s Glory
➢ Indexed cormels (ten cormels/replication of each cultivar) of 0.3–0.5 cm3 size
➢ Thermotherapy - 37 ± 2 °C for 30 days
➢ Chemotherapy - 30, 40, 50 and 60 mg/L of ribavirin
➢ Electrotherapy - immerse in 1X TAE buffer in an electrophoresis tank -
electric currents of 10, 20 and 30 mA for 20 min using a power supply
➢ Combination of chemotherapy and electrotherapy
➢ 23–25 °C with 16 h light.
➢ Regenerated plantlets – test for the presence or absence of BYMV - RT-PCR.
Department of FLA 30
4/22/2021 Kaur et al., 2019
Figure 5: a Leaf and corm samples of symptomatic showing mild to severe virus-
like mosaic symptoms on leaflets and color breaking on florets b image
of RT-PCR with CP-specific primers to check BYMV c Morphology of
healthy and infected plants
Department of FLA 31
4/22/2021 Kaur et al., 2019
Figure 6: Different stages of production of BYMV-free gladiolus plants by
combination of chemotherapy (30 mg/L) with electrotherapy (30 mA for 20 min). a
Infected gladiolus mother b cormels getting electrotherapy in electrophoretic tank;
c cormels explants in MSc media amended with ribavirin; d germination after 30
days; e proliferation in MSp medium; f harvesting of cormels after drying; and g
acclimatization of gladiolus plantlets
Department of FLA 32
4/22/2021 Kaur et al., 2019
Figure 7: Graphical representation of RE, rate of BYMV elimination and TEI of three
gladiolus cultivars treated with various treatments. a RE (%); b rate of BYMV
elimination (%); and c % TEI
Department of FLA 33
4/22/2021 Kaur et al., 2019
Table 4: Results obtained in various treatments using thermotherapy, chemotherapy,
electrotherapy and the combination of electro- with chemotherapy in three
gladiolus cultivars and their respective germination efficiencies in MSg
medium and virus-free plants
Department of FLA 34
4/22/2021 Kaur et al., 2019
Figure 8: Comparison of cormels and root systems of “Aldebaran” cultivar of
gladiolus developed through various treatments with control
Department of FLA 35
4/22/2021 Kaur et al., 2019
Table 5: Performance of BYMV-free gladiolus corms developed through
various treatments as compared to the control
Department of FLA 36
4/22/2021
Cultivars Av. no. of cormels produced
per plant
Average size of cormels
produced (in cm3)
Control BYMV-free Control BYMV-free
Aldebaran 2.0 ± 0.50 5.0 ± 0.50 0.35 ± 0.04 0.56 ± 0.07
Tiger Flame 1.0 ± 0.31 4.0 ± 0.31 0.30 ± 0.01 0.55 ± 0.02
Vink’s Glory 2.0 ± 0.57 6.0 ± 0.57 0.33 ± 0.07 0.51 ± 0.05
Kaur et al., 2019
INFERENCE
➢ Therapies like thermo-, chemo- and electrotherapies alone and in the
combination of chemo- and electrotherapies.
➢ Electrotherapy coupled with chemotherapy in three commercially important
gladiolus cultivars (Aldebaran, Tiger Flame and Vink’s Glory cultivars)
➢ This therapy - effective than other treatments and can be recommended for
better quality production and improvement of gladiolus, valuable crops.
Department of FLA 37
4/22/2021
(E) CRYOTHERAPY:
➢ Liquid nitrogen (-196ºC) or liquid nitrogen vapour (-165 to -190ºC)
➢ Infected cells are eliminated by the lethal effects of the ultra-low temperature
➢ Plum Pox Virus (PPV), CMV, PLRV
➢ Chrysanthemum morifolium - chrysanthemum stunt viroid (CSVd). Jeon et al.
(2016)
➢ Brison et al. (1997) - eliminate Plum pox virus (PPV) - Prunus rootstock
4/22/2021 Department of FLA 38
Wang et al., 2008
Springer-Verlag Wien, 2015, 1-10
Elimination of chrysanthemum stunt viroid and chrysanthemum
chlorotic mottle viroid from infected chrysanthemum by
cryopreservation
Jeon, S.M., Naing, A.H., Kim, H.H., Chung, M.Y., Ki Byung Lim, K.B. and Kim,
C.K.
Objective:- to estimate the effect of various factors - vitrification solution, duration
of exposure to LN, shoot-tip size, and low-temperature treatment, on
the elimination of the viroids by cryopreservation
Department of FLA 39
4/22/2021
MATERIALS AND METHODS
Figure 9: Disease symptoms on Chrysanthemum morifolium cultivars
Department of FLA 40
4/22/2021
Figure 10: Viroid detection by RT-PCR. a Chrysanthemum morifolium.
252-bp for CSVd and 316-bp for CChMVd
Jeon et al., 2015
4/22/2021 Department of FLA 41
Figure 11: Shoot regeneration from explants treated
with PVS3 (a) and PVS2 (b)
Figure 12: Comparison of the surface structures of
shoot tips treated with PVS2 or PVS3
▪ PVS2 - 30 % (w/v)
glycerol, 15 %
(w/v) ethylene
glycol, 15 % (w/v)
DMSO, and 0.4 M
sucrose (Sakai et
al. 1990)
▪ PVS3 - 30 % (w/v)
glycerol and 0.4 M
sucrose Jeon et al.
(2015).
Jeon et al., 2015
Vitrification solution Viroid elimination %
Detected by RT-PCR Detected by nested PCR
Control 0b 0b
PVS2 20a 13.3a
PVS3 0b 0b
4/22/2021 Department of FLA 42
Table 6: Effects of PVS2 and PVS3 on elimination of CSVd
Duration of exposure to
LN (hr)
Viroid elimination %
Detected by RT-PCR Detected by nested PCR
1 20a 13.3a
3 20a 13.3a
5 13.3b 6.7b
7 13.3b 6.7b
10 13.3b 6.7b
Table 7: Effects of duration of exposure to LN on CSVd elimination
252 bp
252 bp
Jeon et al., 2015
Table 8: Effects of shoot-tip size on CSVd elimination from infected
chrysanthemum ‘Borami’ following cryopreservation
Shoot tip size (mm) Viroid elimination %
Detected by RT-PCR Detected by nested PCR
LP 0 6.7c 6.7b
LP 1-3 20a 13.3c
LP 3-4 13.3b 6.7b
4/22/2021 Department of FLA 43
Low temperature Viroid elimination %
Detected by RT-PCR Detected by nested PCR
Control 20b 13.3b
-20ºC for 1hr 6.7c 0d
4ºC for 4 weeks 26.7a 20a
4ºC for 8 weeks 20b 6.7c
Table 9: Effects of low-temperature treatment on CSVd elimination from
infected chrysanthemum ‘Borami’ following cryopreservation
Jeon et al., 2015
INFERENCE
➢ Low-temperature pretreatment – eliminate viroid
➢ Nested PCR > RT-PCR
➢ Cryopreservation > conventional methods
➢ 85 days/ 120 days
➢ Production of pathogen-free plants and for long-term storage
➢ Cryopreserved stocks could be a means to decrease inadvertent dispersal of
plant pathogens.
4/22/2021 Department of FLA 44
4/22/2021 45
VECTORS
➢ Agent which carries or transmit an infectious pathogen into another living
organisms
CONTROL OF AIR BORNE VECTORS
4/22/2021 Department of FLA 46
natural
pesticides
• nicotine
• pyrethrum
• rotenone-
based
compound
• Dioscorea
floribunda
(TMV)
• Azadirachta
indica
• Boerhaavia
diffusa
Synthetic
pesticides
• chlorinated
hydrocarbons
• organophosphor
us compounds
• carbamates
• (imidachloprid,
carbofuran,
monocrotophos,
dicofol,
tetradifon)
Oil
sprays
• mineral oil
• silicon oil
• plant oil
Table 10: Evaluation of different plants extracts and a chemical pesticide
against aphids on sunflower Hysun-33
Treatments 24 HBS 24 HAS 48 HAS 72 HAS 168 HAS
Emamectin benzoate 11.48 b 1.75 h 1.38 h 1.02 g 0.75 h
A. indica oil 11.62 a 3.02 f 2.80 f 2.56 e 2.31 f
A. indica seed extract 11.45 b 3.63 e 3.27 e 3.05 d 2.63 e
A. sativum extract 11.58 a 4.97 c 4.78 c 4.40 c 4.55 c
Parthenium extract 11.73 a 5.82 b 5.30 b 5.01 b 5.22 b
D. alba seed extract 11.88 a 2.62 g 2.00 g 1.55 f 1.27 g
C. longa extract 11.15 b 4.32 d 3.87 d 3.85 d 3.53 d
Control 11.46 b 11.61 a 12.00 a 12.28 a 12.71 a
4/22/2021 Department of FLA 47
Said et al., 2015
EXCLUSION OF SOIL BORNE VECTORS
NEMATODE
➢ Fumigants & nematicides (methyl
bromide, DD aldicarb)
➢ Clean planting stocks
➢ Crop rotation with break crops
➢ Nematode resistance variety
➢ Exclusion of nematode by
quarantine
FUNGUS
➢ Fungicide application (Bavistin &
copper fungicides)
➢ Soil Sterilants and Disinfectants (to
reduce active and resting spores)
➢ E.g-Chloropicrin, (PCNB), methyl
bromide, and (D-D)
4/22/2021 Department of FLA 48
BIOLOGICAL CONTROL
➢ Entomo-pathogens, parasitoids and predators –
reduce
4/22/2021 Department of FLA 49
Dogan et al., 2019
Vectors Control agents
Aphids (Aphididae) Coccinellids, Aphidolates aphidimyza, Adalia
bipunctata and Aphidius colemani; Aphidiidae
and Aphelinidae; Verticillium lecanii , Beauveria
bassiana and Lecanicillium lecanii; Macrolophus
caliginosus
Leaf miner (Liriomyza trifolii) parasitoids (Diglyphus isaea, Chrysonotomyia
formosa, Hemiptarsenus varicornis)
Two-spotted spider mite
(Tetranychus urticae)
Phytoseilus persimilis
Flower thrips (Thrips spp.) Orius spp., Predator mites
Table 11: Usage dosages of some biological control agents and storage conditions
4/22/2021 Department of FLA 50
Dogan et al., 2019
CROSS-PROTECTION
➢ “pre-immunization”
➢ A plant is deliberately infected with a mild strain of a virus - to protect the
plant against damage caused by a more severe strain of the same virus
➢ Closely related strains of the same virus
➢ The protective strain preventing the challenge strain from uncoating upon
entering the plant cell. The coat protein from the protective mild strain may
recoat the challenge strain and prevent its replication
➢ Isle of Wight, 1965 –Tomato mosaic virus
➢ Property: induce milder symptoms, alter marketable properties of crops,
genetically stable, provide protection against widest possible range of strains
and easy & inexpensive to produce
Pechinger et al., 2019
Department of FLA 51
4/22/2021
TRANSGENIC RESISTANCE
➢ Deployment of virus resistant transgenic plants has become an important
strategy to implement effective virus management
➢ Expression of nucleotide sequences of viral and non-viral origin - virus
resistance
Department of FLA 52
4/22/2021
Transgenic
approach
Pathogen derived
resistance
Pathogen
targeted resistance
Host resistance (R)
Baulcombe, 1996
Pathogen derived resistance
➢ Integration of pathogen components that interfere with the normal life cycle of
the virus
➢ Hamilton (1980)
➢ PDR against TMV by expression of TMV coat protein (Powel-abel et al.,1986)
4/22/2021 53
Pathogen-
derived
resistance
Coat
protein
mediated
resistance
MP
mediated
resistance
RNAi
mediated
virus
resistance
Replicase
mediated
resistance
Baulcombe, 1996
Coat protein mediated resistance:-
➢ Resistance of transgenic plants that express genes encoding viral CPs to infection
by the viruses from which the genes are derived
➢ Introduce CP genes, which will be expressed in genetically engineered plants in
order to protect from virus infection
➢ Accumulation of the CP confers resistance to infection and/or disease development
by the virus from which the CP gene was derived and by related viruses
Movement protein mediated resistance:-
➢ Resistance - transgene specified a dysfunctional MP
➢ Expression of defective movement protein confer resistance against viruses
➢ Reduces virus movement throughout the infected plants
➢ Transgenic plants - contain dMP from TMV – tobamoviruses (Lapidot et al. 1993)
➢ MP is non-structural viral protein known to function in viral movement.
4/22/2021 Department of FLA 54
Baulcombe, 1996
Transgenic Research, 2005, 14: 41–46
Transgenic resistance to Cymbidium mosaic virus in
Dendrobium expressing the viral capsid protein gene
Chang, C., Chen, Y.C., Hsu, Y.H., Wu, J.T., Hu, C.C., Chang, W.C. and Lin, N.S.
Objective: To develop transgenic resistance against Cymbidium mosaic virus in
Dendrobium through coat-protein mediated resistance
KRC
College
of
Horticulture,
Arabhavi
55
4/22/2021
MATERIALS AND METHODS
➢ RNA extraction from CymMV isolate, cDNA synthesis of CP gene and
sequencing
➢ (RT-PCR) was performed for the synthesis of cDNA of CymMV CP gene
➢ Plasmid construction and transformation – pGEM-T
➢ pGEMCymMVCP contained the full-length CP gene of CymMV.
➢ pKYLX vector
➢ Plasmid pCYCP11 (CaMV 35S promoter, CymMV CP gene, and the hygR
gene)
➢ 15 days - Dendrobium protocorms were bombarded with 1.0 µm diameter gold
particles coated with pCYCP11 (5 µg pCYCP11/1.25 mg gold particle).
Department of FLA 56
4/22/2021 Chang et al., 2005
Figure 13: Regeneration of transgenic Dendrobium after particle bombardment (A)
Flowering Dendrobium Hickam Deb. B) Protocorm-like bodies proliferating
on medium supplemented with 20 mg/L hygromycin after 6 month selection
(C) Transgenic lines planted on selection medium, showing green leaves and
healthy roots (D) Transgenic plants transferred to growth chamber
Department of FLA 57
4/22/2021
Chang et al., 2005
Figure 15: (A) Northern blot
analysis of CP gene expression in
transgenic Dendrobium.
(B) Western blot analysis using
anti-CymMV serum for the
detection of CP protein from wild
type (lanes CK1 and CK2) and
transgenic lines (lanes 15-9-1, 15-
4-3, 15-2-2, 9-1-3, 4-1-1, 3-4-2
and 3-4-1).
(C and D) Resistance to CymMV
infection as analyzed using
ELISA
Department of FLA 58
4/22/2021
1 µl/ml
10 µl/ml
Chang et al., 2005
INFERENCE
➢ Transform the CymMV CP gene into Dendrobium protocorms through
biolistic transformation.
➢ CPMP provides a good protection from CymMV infection in Dendrobium
➢ CymMV-CS isolate - the production of transgenic orchids expressing this CP
gene has a great potential to be resistant to infection by various CymMV
isolates
Department of FLA 59
4/22/2021
RNAi mediated virus resistance:-
➢ Involves RNA silencing in which sequence-specific RNA degradation occurs
➢ Waterhouse et al. (1998) against PVY in transgenic tobacco plants
➢ Resistance based on RNA - durable - protein mediated resistance
Replicase-Mediated Resistance (Rep-MR):-
➢ Replicase (Rep) protein
➢ Golemboski et al. (1990) - tobacco against TMV
➢ Resistance may be protein based (Rep-MR to PVY) or post transcriptional
gene silencing (Rep-MR to PVX, Cowpea mosaic virus)
➢ Gives immune type reaction and there is a substantial inhibition of virus
replication
Kawazu et al., 2009
4/22/2021 Department of FLA 60
Plant Cell Rep, 2008, 27:1027–1038.
Agrobacterium tumefaciens-mediated transformation of poinsettia, Euphorbia
pulcherrima, with virus-derived hairpin RNA constructs confers resistance to
Poinsettia mosaic virus
Clarke, J.L., Spetz, C., Haugslien, S., Xing, S., Dees, M.W., Moe, R. and Blystad, D.R.
Objective:- to develop transgenic PnMV resistant poinsettia plants carrying PnMV
derived hpRNA
4/22/2021 61
MATERIAL AND METHODS
➢ Poinsettia cv. Millenium
➢ Heat therapy – eliminate PnMV
➢ A. tumefaciens strain LBA4404
➢ 3 HpRNA constructs – pCP (viral coat protein), pR2 and pR3 (RNA-
dependant RNA-polymerase (RdRp))
➢ 1-1.5 mm explant
➢ Screening of transgenic poinsettia plants
Department of FLA 62
4/22/2021 Charke et al., 2008
Figure 14: Somatic embryogenesis in poinsettia cv. Millenium
4/22/2021 Department of FLA 63
Charke et al., 2008
Table 12: Summary of five Agrobacterium-mediated transformation
experiments on poinsettia cv. Millenium with pCP, pR2 and
pR3 constructs
Experiment a No. of
explants
No. of
regenerate
d plants
No. of
transformantsb
Transformation
efficiency (%)c
1 (CP) 185 54 3 1.6
2 (R3) 132 69 3 2.3
3 (R3) 172 66 6 3.5
4 (R2) 254 21 3 1.2
5 (R2) 125 18 3 2.4
a CP, R3, and R2 represent transformation experiments with constructs pCP, pR2 and
pR3, respectively
b Transformants verified by PCR and Southern blot analysis
c Number of transformants/total number of explants transformed
4/22/2021 Department of FLA 64
868 228 18
9
6
Charke et al., 2008
2.1
Figure 15: PCR analysis. PCR positive
transformants detected with primer pairs for (a)
CP, (b) R2 and (c) R3 fragments respectively.
Figure 16: Southern blot analysis
transformants carrying
pCP, pR2 and pR3
constructs.
4/22/2021 Department of FLA 65
Charke et al., 2008
Table 13: Immunological detection of PnMV on non-transformed and
transformed poinsettia plants inoculated with PnMV
4/22/2021
Construct Transgenic plant a ELISAb
6 wpi 10wpi
R2 72-1 0.1 0.1
72-2 0.1 0.2
R3 18-1 0.1 0.2
40B 0.8 2.4
41-2 0.5 2.6
62-1 0.1 0.2
41-5 0.7 2.8
CP 11-1 0.1 0.2
3-1 0.1 0.1
Control + 1 0.8 2.8
2 0.8 2.7
Department of FLA 66
INFERENCE
➢ Develop Agrobacterium tumefaciens-mediated transformation of poinsettia,
Euphorbia pulcherrima
➢ Transgenic PnMV resistant transgenic lines expressing PnMV-derived hairpin
RNA constructs
Department of FLA 67
4/22/2021
➢ Pathogen targeted resistance
➢ Integration of components that
specifically target viral genes and
their products
➢ Achieved by:
➢ Ribosome inactivating protein
➢ Interferons
➢ Ribozymes
➢ Host resistance
➢ Integration of existing host
resistance (R) genes into non-
resistant hosts
Figure 17: Antiviral activities of
interferon`
4/22/2021 Department of FLA 68
Kawazu et al., 2009
Viruses that Enhance the Aesthetics of Some Ornamental Plants
69
Tulip (TBV) Camellia (CYMV) Nandina (NSPV) Canna (CYMV)
70
(A) Viola sp. (CMV); (B) coleus (CMV) (C) Geranium (PFBV)
(D) Angelonia sp. (AFBV) (E) Impatiens (IFBV)
Table 14: List of selected viruses that enhance the aesthetics of some ornamental
plants
4/22/2021 Department of FLA 71
Rodrigo et al., 2012
CONCLUSION
➢ Preventive measures are the most general approach to control viral diseases
➢ Indirect methods - use of modified cultural practices, use of virus-free
planting materials, application of insecticides and oils for control, transgenic
approach, cross protection etc.
➢ A single approach to control is unwise; integrated disease management is the
best strategy to combat viral diseases in ornamental crops.
4/22/2021 Department of FLA 72
4/22/2021 Department of FLA 73
THANK YOU

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Strategies for controlling viral diseases in ornamental crops 1

  • 1.
  • 2.
  • 3. UNIVERSITY OF HORTICULTURAL SCIENCES, BAGALKOT 3rd SEMINAR Strategies for controlling viral diseases in ornamental crops Takhellambam Henny Chanu UHS18PGD253 Department of FLA
  • 5. INTRODUCTION ➢ Nucleic acid surrounded by a protein coat ➢ Virus: set of one or more nucleic acid template molecule, normally encased in protective protein coat (Mathews, 1981) ➢ Obligate intracellular parasites ➢ Small infectious agent that replicates only inside the living cells of other organisms ➢ Sub microscopic ➢ Transmit – vectors ➢ 1st - TMV (Tobacco mosaic virus) – discover 4/22/2021 Department of FLA 5
  • 6. Types Type of genome Virus ss RNA Tobacco mosaic virus, Carnation latent virus, Carnation mottle virus, Carnation ring spot virus, Cucumber mosaic virus ds RNA Rice dwarf virus, Reovirus ss DNA Bean yellow mosaic virus, Banana bunchy top virus ds DNA Cauliflower mosaic virus, Petunia vein clearing virus 4/22/2021 Department of FLA 6 Katoch et al., 2002
  • 7. Viruses of flower crops Crops Viruses Carnation Carnation mottle, Carnation necrotic fleck, Carnation ringspot, Carnation streak virus, Impatiens necrotic spot virus Cosmos Beet curly top virus, Tomato spotted wilt virus (Raikhy et al., 2006) Dahlia Cucumber mosaic virus, Dahlia mosaic virus, Impatiens necrotic spot virus, Tomato spotted wilt virus Gladiolus Bean yellow mosaic virus, Tobacco ringspot virus, Tomato spotted wilt virus, Cucumber mosaic virus (Katoch et al., 2002) Petunia Impatiens necrotic spot virus, Petunia mosaic virus, TSWV 4/22/2021 Department of FLA 7
  • 8. Gerbera Tomato spotted wilt virus, CMV (Verma et al., 2004) Lily Cucumber mosaic virus, Lily mottle virus, Lily streak virus, Tomato spotted wilt virus (Ram et al., 1999) Marigold Tomato spotted wilt virus Chrysanthemum Tomato aspermy virus , Chrysanthemum mosaic virus, Impatiens necrotic spot virus, Tomato spotted wilt virus, Chrysanthemum stunt viroid (Verma et al., 2003) http://www.ipm.ucdavis.edu http://www.ipm.ucdavis.edu Viruses of flower crops 4/22/2021 Department of FLA 8
  • 9. VIRUS VECTORS HOSTS Bean yellow mosaic virus Aphids Gladiolus, Sweet pea Beet curly top virus Leafhoppers Cosmos, Geranium, Petunia, Strawflower, Stock, Viola, Zinnia Cauliflower mosaic virus Aphids Stock Cucumber mosaic virus Aphids Begonia, Calendula, China aster, Dahlia, Gerbera, Gladiolus, Primula Prunus necrotic ringspot virus Grafting; Pollen Rose Tobacco mosaic virus Mechanical Delphinium, Petunia, Phlox, Wisteria Impatiens necrotic spot virus and TSWV Thrips Begonia, Calendula, Chrysanthemum, Coreopsis, Dahlia, Gerbera, Gladiolus http://www.ipm.ucdavis.edu Department of FLA 9 4/22/2021
  • 10. Diseases Diseases Anthurium (Groundnut bud necrosis virus) Anthurium (Groundnut bud necrosis virus) Gladiolus (BYMV) Gladiolus (BYMV) Chrysanthemum (CSVd) Chrysanthemum (CSVd) Rose (Emaravirus sp.) Rose (Emaravirus sp.) Crossandra (TLCV) Crossandra (TLCV) Orchid (cymMV) Orchid (cymMV) 10 4/22/2021
  • 11. SOURCE OF INFECTION Weeds Debris and crop residue Tools and personnels Seeds/ propagation stock plant 4/22/2021 Department of FLA 11
  • 12. MANAGEMENT STRATEGIES Cultural methods Control of vectors Biological control Cross-protection Transgenic resistance 4/22/2021 Department of FLA 12
  • 13. CULTURAL METHODS ➢ Use of Virus Free Planting Materials ➢ (a) occurrence of infection as soon as possible in young developing seedling ➢ (b) infected seedling act as source of initial virus inoculum for subsequent further spread. ➢ Avoidance of Collateral Hosts and Volunteers ➢ Wherever healthy planting materials were used, the virus infection comes from the weed hosts or other infected crops ➢ Roguing - main crop is the primary/sole source of virus infection - not effective the virus has wider host range, the spread is relatively fast. ➢ Plant density - higher planting density lessens the number of infections per unit area 4/22/2021 Department of FLA 13 Tripathi and Verma, 2017
  • 14. ➢ Trap crop and barrier crops – fast growing and taller than the main crop and it should not be susceptible to the viruses and their vectors of the main crop – maize, marigold (Rose - Pelargonium geraniums as trap crop ) ➢ Use of plastic mulch – avoid landing of insect on crop plants, minimize; UV, IR light ➢ Use of physical barriers – fine mesh screen ➢ Sowing/Planting Dates - avoid - highest number of viruliferous insect vectors. Planting time – virus migration ➢ Remove plant debris from plastic tunnel houses and glasshouses ➢ Treatment of implements with 3% trisodium orthophosphate 4/22/2021 Department of FLA 14 Tripathi and Verma, 2017
  • 15. Methods for obtaining virus free stocks Thermotherapy Electrotherapy Meristem culture Chemotherapy Cryotherapy Virus free stocks Naturally occurring virus free material Department of FLA 15 4/22/2021
  • 16. (A) MERISTEM TIP CULTURE: ➢ An efficient tool for regeneration, elimination of viruses from infected plants and production of virus-free seed material ➢ Absence of virus in meristem - high metabolic activities, usually accompanied by elevated endogenous auxin content in shoot apices, lack of vascular system and virus inactivating system may inhibit virus multiplication ➢ The production of virus-free plants - determination of optimal size range of meristem/shoot tips (0.3-1.5 mm) and a high rate of plant regeneration ➢ Morel and Martin (1952) – eliminate viruses from dahlia using meristem culture ➢ Number of virus-free plantlets obtainable is inversely proportional to the size of the cultured tips (Faccioli and Marani,1998) Bhat et al., 2020 Department of FLA 16 4/22/2021
  • 17. Department of FLA 17 4/22/2021 Bhat et al., 2020
  • 18. Scientia Horticulturae, 2009, 119: 108–112 Elimination of mixed infection of Cucumber mosaic and Tomato aspermy virus from Chrysanthemum morifolium Ramat. cv. Pooja by shoot meristem culture Kumar, S., Khan, M.S., Raj, S.K. and Sharma, A.K. ➢ Eliminate CMV and TAV at a time by culturing shoot meristems of the naturally infected chrysanthemum cv. Pooja ➢ To produce virus-free chrysanthemum plants 18 4/22/2021 Department of FLA
  • 19. MATERIALS AND METHODS ➢ Naturally infected C. morifolium Ramat. cv. Pooja meristem size 0.3 mm - culture on MS medium ➢ 25 ± 2°C – 16/8 hr photoperiod - forthnightly ➢ DAC-ELISA - performed by using antiserum of CMV (PVAS 242a) and TAV (PVAS 24) ➢ RT-PCR using specific primers of CMV(AM180922 and AM180923) & (J566128), (AJ566129) primer for TAV ➢ RT-PCR Process:-denaturation at 94 oC for 5 min there were 25 cycles of amplification with denaturation at 94 for 1 min, annealing at 52 oC for 1min (CMV) and 56 oC for 1 min (TAV) and extension at 72 oC for 1 min following the final extension of 10 min at 72 °C. Department of FLA 19 4/22/2021 Kumar et al., 2009
  • 20. Figure 1: Gel electrophoresis of RT-PCR products showing 657 bp amplicons in naturally infected chrysanthemum samples obtained by CMV-specific primers (a) and TAV specific primers (b). PCR products from naturally infected and healthy chrysanthemum plants. Department of FLA 20 4/22/2021 Kumar et al., 2009
  • 21. Figure 2: Optimization of growth regulator concentrations(NAA and BAP) supplemented to MS media with 0.3 mm shoot meristem explants of healthy chrysanthemum Pooja cultivar Department of FLA 21 4/22/2021 Kumar et al., 2009
  • 22. Figure 3 (a and b): Multiple shoots regenerated from the mild callus at the end of excised shoot meristem in 20–25 days Figure 3 (c): Well developed shootlets excised after 55–60 days and positioned onto rooting medium which developed roots after 6 - 7 days Figure 3 (d): Acclimatized chrysanthemum cv. Pooja plants in glasshouse Department of FLA 22 4/22/2021 Kumar et al., 2009
  • 23. Table 1: Indexing for CMV- and TAV-free plants from Chrysanthemum cv. Pooja shoot meristems Table 2: Performance of in vitro-raised virus-free chrysanthemum cv. Pooja plants as compared to diseased plants with respect to growth parameters Department of FLA 23 4/22/2021 Virus-free plants Percentage of virus-free plants (virus-free/total) obtained as tested by ELISA RT-PCR Total CMV-free 81.2% (26/32) 84.0% (21/25) 65.6% (21/32) TAV-free 87.5% (28/32) 88.0% (22/25) 68.7% (22/32) Both CMV and TAV-free 78.1% (25/32) 84.0% (21/25) 65.6% (21/32) Sl. No. Explant type Growth parameters Plant height (cm) No. of branches per plant Length of branch (cm) No. of flowers per plant 1. CMV and TAV-free 34.40 ± 1.58* 9.05 ± 0.39* 26.60 ± 0.75* 38.05 ± 0.94* 2. Control (doubly infected plant) 17.33 ± 0.58* 4.33 ± 0.33* 12.00 ± 1.35* 24.33 ± 0.61* 3. Increase in performance over control, % (infected) 50.20 52.15 34.88 36.05 Kumar et al., 2009
  • 24. INFERENCE • Shoot meristem culture method – generate TAV-free and CMV-free chrysanthemums • Reasons for virus elimination: growth regulators action particularly cytokinin- loss of enzymes necessary for viral replication, RNA degradation due to cell injury Department of FLA 24 4/22/2021
  • 25. (B) THERMOTHERAPY: ➢ 35–42 °C for 4–6 weeks is applied to the target plant, depending on virus type and plant species and virus-host combination ➢ Higher the temperature and the longer the exposure duration are, the higher the virus-eradication frequency is. ➢ Kassanis (1949) eliminate PLRV - potato tubers – 37ºC and 25 days ➢ Mechanisms – ➢ (1) Prevent virus movement toward the meristematic cells of the treated shoots - result in production of larger virus free areas of the infected shoot tips, thus helping virus eradication ➢ (2) Inhibit viral replication or caused virus RNA degradation ➢ (3) Biogenesis of vsiRNAs and inhibited viral RNA accumulation, by upregulating the expression of key genes in the RNA silencing pathway ➢ Virus-free - carnation, narcissus, chrysanthemum, geranium 4/22/2021 Department of FLA 25 Wang et al., 2018
  • 26. Table 3: Some examples of in vitro thermotherapy followed by shoot tip culture for virus eradication 4/22/2021 Department of FLA 26 Wang et al., 2018 Plant species and cultivars or genotypes Viruses Temperatur e and duration Size of shoot tips (in mm) Virus-free frequency Chrysanthemum ‘Regol Time’ Chrysanthemum B virus (CVB) 38 °C, 30 days 0.3–1.0 12 Lilium × elegans geno- types 409 and 599 Lilium symptomless virus (LSV) 35 °C, 42 days 0.3 100 Lilium Asiatic hybrid ‘Vis- conti’, and LA hybrids ‘Fangio’ and ‘Lacorno’ LSV, lily mottle virus (LMoV) and cucumber mosaic virus (CMV) 35 °C, 5 weeks NS 100 (LSV) 100 (CMV) 100 (LMoV Begonia Prunus necrotic ringspot virus (PNRSV) 38 °C/22 °C, (day/night), 35 days 2-3 cm 37.5
  • 27. (C) CHEMOTHERAPY: ➢ Incorporation of antiviral compounds into explant and meristem culture media to obtain higher percentage of virus free progeny plants ➢ Synthetic nucleoside : tiazofurin, selenazofurin ,benzamide riboside ➢ Non-nucleosides : micophenolic acid were tested against CMV ➢ Antibiotic – streptothricin, terramycin, achromycin, agrimycin, aureomycin hydrochloride; dyes - malachite green and methylene blue; nicotinic acid, amino acids, IAA, 2, 4-D, hydroquinone ➢ Ribavirin/ virazole - 9 families ➢ Limitations - narrow antiviral spectrum, ineffectiveness against the latent virus, development of drug-resistant mutants and toxic side effects 4/22/2021 Department of FLA 27 Erik, 1996
  • 28. (D) ELECTROTHERAPY: ➢ Degrade viral nucleoprotein and eliminate its virulence ➢ First - eliminate Potato virus X (PVX) from potato -15 mA for 5 min - 60–100 % elimination of PVX (Lozoya-Saldana et al., 1996) 4/22/2021 Department of FLA 28 Figure 4: Electrotherapy treatments steps and equipment used to produce virus-free plants Natrium chloride solution
  • 29. Biotech, 2019, 3(9): 153-162 Elimination of Bean yellow mosaic virus from infected cormels of three cultivars of gladiolus using thermo-, electro- and chemotherapy Kaur, C., Raj, R., Kumar, S., Purshottam, D.K., Agrawal, L., Chauhan, P.S. and Raj, S.K. Objective:- to establish an effective and facile BYMV management strategy for quality improvement of gladiolus. Department of FLA 29 4/22/2021
  • 30. MATERIAL AND METHODS ➢ CSIR-NBRI, Lucknow ➢ Aldebaran, Tiger Flame and Vink’s Glory ➢ Indexed cormels (ten cormels/replication of each cultivar) of 0.3–0.5 cm3 size ➢ Thermotherapy - 37 ± 2 °C for 30 days ➢ Chemotherapy - 30, 40, 50 and 60 mg/L of ribavirin ➢ Electrotherapy - immerse in 1X TAE buffer in an electrophoresis tank - electric currents of 10, 20 and 30 mA for 20 min using a power supply ➢ Combination of chemotherapy and electrotherapy ➢ 23–25 °C with 16 h light. ➢ Regenerated plantlets – test for the presence or absence of BYMV - RT-PCR. Department of FLA 30 4/22/2021 Kaur et al., 2019
  • 31. Figure 5: a Leaf and corm samples of symptomatic showing mild to severe virus- like mosaic symptoms on leaflets and color breaking on florets b image of RT-PCR with CP-specific primers to check BYMV c Morphology of healthy and infected plants Department of FLA 31 4/22/2021 Kaur et al., 2019
  • 32. Figure 6: Different stages of production of BYMV-free gladiolus plants by combination of chemotherapy (30 mg/L) with electrotherapy (30 mA for 20 min). a Infected gladiolus mother b cormels getting electrotherapy in electrophoretic tank; c cormels explants in MSc media amended with ribavirin; d germination after 30 days; e proliferation in MSp medium; f harvesting of cormels after drying; and g acclimatization of gladiolus plantlets Department of FLA 32 4/22/2021 Kaur et al., 2019
  • 33. Figure 7: Graphical representation of RE, rate of BYMV elimination and TEI of three gladiolus cultivars treated with various treatments. a RE (%); b rate of BYMV elimination (%); and c % TEI Department of FLA 33 4/22/2021 Kaur et al., 2019
  • 34. Table 4: Results obtained in various treatments using thermotherapy, chemotherapy, electrotherapy and the combination of electro- with chemotherapy in three gladiolus cultivars and their respective germination efficiencies in MSg medium and virus-free plants Department of FLA 34 4/22/2021 Kaur et al., 2019
  • 35. Figure 8: Comparison of cormels and root systems of “Aldebaran” cultivar of gladiolus developed through various treatments with control Department of FLA 35 4/22/2021 Kaur et al., 2019
  • 36. Table 5: Performance of BYMV-free gladiolus corms developed through various treatments as compared to the control Department of FLA 36 4/22/2021 Cultivars Av. no. of cormels produced per plant Average size of cormels produced (in cm3) Control BYMV-free Control BYMV-free Aldebaran 2.0 ± 0.50 5.0 ± 0.50 0.35 ± 0.04 0.56 ± 0.07 Tiger Flame 1.0 ± 0.31 4.0 ± 0.31 0.30 ± 0.01 0.55 ± 0.02 Vink’s Glory 2.0 ± 0.57 6.0 ± 0.57 0.33 ± 0.07 0.51 ± 0.05 Kaur et al., 2019
  • 37. INFERENCE ➢ Therapies like thermo-, chemo- and electrotherapies alone and in the combination of chemo- and electrotherapies. ➢ Electrotherapy coupled with chemotherapy in three commercially important gladiolus cultivars (Aldebaran, Tiger Flame and Vink’s Glory cultivars) ➢ This therapy - effective than other treatments and can be recommended for better quality production and improvement of gladiolus, valuable crops. Department of FLA 37 4/22/2021
  • 38. (E) CRYOTHERAPY: ➢ Liquid nitrogen (-196ºC) or liquid nitrogen vapour (-165 to -190ºC) ➢ Infected cells are eliminated by the lethal effects of the ultra-low temperature ➢ Plum Pox Virus (PPV), CMV, PLRV ➢ Chrysanthemum morifolium - chrysanthemum stunt viroid (CSVd). Jeon et al. (2016) ➢ Brison et al. (1997) - eliminate Plum pox virus (PPV) - Prunus rootstock 4/22/2021 Department of FLA 38 Wang et al., 2008
  • 39. Springer-Verlag Wien, 2015, 1-10 Elimination of chrysanthemum stunt viroid and chrysanthemum chlorotic mottle viroid from infected chrysanthemum by cryopreservation Jeon, S.M., Naing, A.H., Kim, H.H., Chung, M.Y., Ki Byung Lim, K.B. and Kim, C.K. Objective:- to estimate the effect of various factors - vitrification solution, duration of exposure to LN, shoot-tip size, and low-temperature treatment, on the elimination of the viroids by cryopreservation Department of FLA 39 4/22/2021
  • 40. MATERIALS AND METHODS Figure 9: Disease symptoms on Chrysanthemum morifolium cultivars Department of FLA 40 4/22/2021 Figure 10: Viroid detection by RT-PCR. a Chrysanthemum morifolium. 252-bp for CSVd and 316-bp for CChMVd Jeon et al., 2015
  • 41. 4/22/2021 Department of FLA 41 Figure 11: Shoot regeneration from explants treated with PVS3 (a) and PVS2 (b) Figure 12: Comparison of the surface structures of shoot tips treated with PVS2 or PVS3 ▪ PVS2 - 30 % (w/v) glycerol, 15 % (w/v) ethylene glycol, 15 % (w/v) DMSO, and 0.4 M sucrose (Sakai et al. 1990) ▪ PVS3 - 30 % (w/v) glycerol and 0.4 M sucrose Jeon et al. (2015). Jeon et al., 2015
  • 42. Vitrification solution Viroid elimination % Detected by RT-PCR Detected by nested PCR Control 0b 0b PVS2 20a 13.3a PVS3 0b 0b 4/22/2021 Department of FLA 42 Table 6: Effects of PVS2 and PVS3 on elimination of CSVd Duration of exposure to LN (hr) Viroid elimination % Detected by RT-PCR Detected by nested PCR 1 20a 13.3a 3 20a 13.3a 5 13.3b 6.7b 7 13.3b 6.7b 10 13.3b 6.7b Table 7: Effects of duration of exposure to LN on CSVd elimination 252 bp 252 bp Jeon et al., 2015
  • 43. Table 8: Effects of shoot-tip size on CSVd elimination from infected chrysanthemum ‘Borami’ following cryopreservation Shoot tip size (mm) Viroid elimination % Detected by RT-PCR Detected by nested PCR LP 0 6.7c 6.7b LP 1-3 20a 13.3c LP 3-4 13.3b 6.7b 4/22/2021 Department of FLA 43 Low temperature Viroid elimination % Detected by RT-PCR Detected by nested PCR Control 20b 13.3b -20ºC for 1hr 6.7c 0d 4ºC for 4 weeks 26.7a 20a 4ºC for 8 weeks 20b 6.7c Table 9: Effects of low-temperature treatment on CSVd elimination from infected chrysanthemum ‘Borami’ following cryopreservation Jeon et al., 2015
  • 44. INFERENCE ➢ Low-temperature pretreatment – eliminate viroid ➢ Nested PCR > RT-PCR ➢ Cryopreservation > conventional methods ➢ 85 days/ 120 days ➢ Production of pathogen-free plants and for long-term storage ➢ Cryopreserved stocks could be a means to decrease inadvertent dispersal of plant pathogens. 4/22/2021 Department of FLA 44
  • 45. 4/22/2021 45 VECTORS ➢ Agent which carries or transmit an infectious pathogen into another living organisms
  • 46. CONTROL OF AIR BORNE VECTORS 4/22/2021 Department of FLA 46 natural pesticides • nicotine • pyrethrum • rotenone- based compound • Dioscorea floribunda (TMV) • Azadirachta indica • Boerhaavia diffusa Synthetic pesticides • chlorinated hydrocarbons • organophosphor us compounds • carbamates • (imidachloprid, carbofuran, monocrotophos, dicofol, tetradifon) Oil sprays • mineral oil • silicon oil • plant oil
  • 47. Table 10: Evaluation of different plants extracts and a chemical pesticide against aphids on sunflower Hysun-33 Treatments 24 HBS 24 HAS 48 HAS 72 HAS 168 HAS Emamectin benzoate 11.48 b 1.75 h 1.38 h 1.02 g 0.75 h A. indica oil 11.62 a 3.02 f 2.80 f 2.56 e 2.31 f A. indica seed extract 11.45 b 3.63 e 3.27 e 3.05 d 2.63 e A. sativum extract 11.58 a 4.97 c 4.78 c 4.40 c 4.55 c Parthenium extract 11.73 a 5.82 b 5.30 b 5.01 b 5.22 b D. alba seed extract 11.88 a 2.62 g 2.00 g 1.55 f 1.27 g C. longa extract 11.15 b 4.32 d 3.87 d 3.85 d 3.53 d Control 11.46 b 11.61 a 12.00 a 12.28 a 12.71 a 4/22/2021 Department of FLA 47 Said et al., 2015
  • 48. EXCLUSION OF SOIL BORNE VECTORS NEMATODE ➢ Fumigants & nematicides (methyl bromide, DD aldicarb) ➢ Clean planting stocks ➢ Crop rotation with break crops ➢ Nematode resistance variety ➢ Exclusion of nematode by quarantine FUNGUS ➢ Fungicide application (Bavistin & copper fungicides) ➢ Soil Sterilants and Disinfectants (to reduce active and resting spores) ➢ E.g-Chloropicrin, (PCNB), methyl bromide, and (D-D) 4/22/2021 Department of FLA 48
  • 49. BIOLOGICAL CONTROL ➢ Entomo-pathogens, parasitoids and predators – reduce 4/22/2021 Department of FLA 49 Dogan et al., 2019 Vectors Control agents Aphids (Aphididae) Coccinellids, Aphidolates aphidimyza, Adalia bipunctata and Aphidius colemani; Aphidiidae and Aphelinidae; Verticillium lecanii , Beauveria bassiana and Lecanicillium lecanii; Macrolophus caliginosus Leaf miner (Liriomyza trifolii) parasitoids (Diglyphus isaea, Chrysonotomyia formosa, Hemiptarsenus varicornis) Two-spotted spider mite (Tetranychus urticae) Phytoseilus persimilis Flower thrips (Thrips spp.) Orius spp., Predator mites
  • 50. Table 11: Usage dosages of some biological control agents and storage conditions 4/22/2021 Department of FLA 50 Dogan et al., 2019
  • 51. CROSS-PROTECTION ➢ “pre-immunization” ➢ A plant is deliberately infected with a mild strain of a virus - to protect the plant against damage caused by a more severe strain of the same virus ➢ Closely related strains of the same virus ➢ The protective strain preventing the challenge strain from uncoating upon entering the plant cell. The coat protein from the protective mild strain may recoat the challenge strain and prevent its replication ➢ Isle of Wight, 1965 –Tomato mosaic virus ➢ Property: induce milder symptoms, alter marketable properties of crops, genetically stable, provide protection against widest possible range of strains and easy & inexpensive to produce Pechinger et al., 2019 Department of FLA 51 4/22/2021
  • 52. TRANSGENIC RESISTANCE ➢ Deployment of virus resistant transgenic plants has become an important strategy to implement effective virus management ➢ Expression of nucleotide sequences of viral and non-viral origin - virus resistance Department of FLA 52 4/22/2021 Transgenic approach Pathogen derived resistance Pathogen targeted resistance Host resistance (R) Baulcombe, 1996
  • 53. Pathogen derived resistance ➢ Integration of pathogen components that interfere with the normal life cycle of the virus ➢ Hamilton (1980) ➢ PDR against TMV by expression of TMV coat protein (Powel-abel et al.,1986) 4/22/2021 53 Pathogen- derived resistance Coat protein mediated resistance MP mediated resistance RNAi mediated virus resistance Replicase mediated resistance Baulcombe, 1996
  • 54. Coat protein mediated resistance:- ➢ Resistance of transgenic plants that express genes encoding viral CPs to infection by the viruses from which the genes are derived ➢ Introduce CP genes, which will be expressed in genetically engineered plants in order to protect from virus infection ➢ Accumulation of the CP confers resistance to infection and/or disease development by the virus from which the CP gene was derived and by related viruses Movement protein mediated resistance:- ➢ Resistance - transgene specified a dysfunctional MP ➢ Expression of defective movement protein confer resistance against viruses ➢ Reduces virus movement throughout the infected plants ➢ Transgenic plants - contain dMP from TMV – tobamoviruses (Lapidot et al. 1993) ➢ MP is non-structural viral protein known to function in viral movement. 4/22/2021 Department of FLA 54 Baulcombe, 1996
  • 55. Transgenic Research, 2005, 14: 41–46 Transgenic resistance to Cymbidium mosaic virus in Dendrobium expressing the viral capsid protein gene Chang, C., Chen, Y.C., Hsu, Y.H., Wu, J.T., Hu, C.C., Chang, W.C. and Lin, N.S. Objective: To develop transgenic resistance against Cymbidium mosaic virus in Dendrobium through coat-protein mediated resistance KRC College of Horticulture, Arabhavi 55 4/22/2021
  • 56. MATERIALS AND METHODS ➢ RNA extraction from CymMV isolate, cDNA synthesis of CP gene and sequencing ➢ (RT-PCR) was performed for the synthesis of cDNA of CymMV CP gene ➢ Plasmid construction and transformation – pGEM-T ➢ pGEMCymMVCP contained the full-length CP gene of CymMV. ➢ pKYLX vector ➢ Plasmid pCYCP11 (CaMV 35S promoter, CymMV CP gene, and the hygR gene) ➢ 15 days - Dendrobium protocorms were bombarded with 1.0 µm diameter gold particles coated with pCYCP11 (5 µg pCYCP11/1.25 mg gold particle). Department of FLA 56 4/22/2021 Chang et al., 2005
  • 57. Figure 13: Regeneration of transgenic Dendrobium after particle bombardment (A) Flowering Dendrobium Hickam Deb. B) Protocorm-like bodies proliferating on medium supplemented with 20 mg/L hygromycin after 6 month selection (C) Transgenic lines planted on selection medium, showing green leaves and healthy roots (D) Transgenic plants transferred to growth chamber Department of FLA 57 4/22/2021 Chang et al., 2005
  • 58. Figure 15: (A) Northern blot analysis of CP gene expression in transgenic Dendrobium. (B) Western blot analysis using anti-CymMV serum for the detection of CP protein from wild type (lanes CK1 and CK2) and transgenic lines (lanes 15-9-1, 15- 4-3, 15-2-2, 9-1-3, 4-1-1, 3-4-2 and 3-4-1). (C and D) Resistance to CymMV infection as analyzed using ELISA Department of FLA 58 4/22/2021 1 µl/ml 10 µl/ml Chang et al., 2005
  • 59. INFERENCE ➢ Transform the CymMV CP gene into Dendrobium protocorms through biolistic transformation. ➢ CPMP provides a good protection from CymMV infection in Dendrobium ➢ CymMV-CS isolate - the production of transgenic orchids expressing this CP gene has a great potential to be resistant to infection by various CymMV isolates Department of FLA 59 4/22/2021
  • 60. RNAi mediated virus resistance:- ➢ Involves RNA silencing in which sequence-specific RNA degradation occurs ➢ Waterhouse et al. (1998) against PVY in transgenic tobacco plants ➢ Resistance based on RNA - durable - protein mediated resistance Replicase-Mediated Resistance (Rep-MR):- ➢ Replicase (Rep) protein ➢ Golemboski et al. (1990) - tobacco against TMV ➢ Resistance may be protein based (Rep-MR to PVY) or post transcriptional gene silencing (Rep-MR to PVX, Cowpea mosaic virus) ➢ Gives immune type reaction and there is a substantial inhibition of virus replication Kawazu et al., 2009 4/22/2021 Department of FLA 60
  • 61. Plant Cell Rep, 2008, 27:1027–1038. Agrobacterium tumefaciens-mediated transformation of poinsettia, Euphorbia pulcherrima, with virus-derived hairpin RNA constructs confers resistance to Poinsettia mosaic virus Clarke, J.L., Spetz, C., Haugslien, S., Xing, S., Dees, M.W., Moe, R. and Blystad, D.R. Objective:- to develop transgenic PnMV resistant poinsettia plants carrying PnMV derived hpRNA 4/22/2021 61
  • 62. MATERIAL AND METHODS ➢ Poinsettia cv. Millenium ➢ Heat therapy – eliminate PnMV ➢ A. tumefaciens strain LBA4404 ➢ 3 HpRNA constructs – pCP (viral coat protein), pR2 and pR3 (RNA- dependant RNA-polymerase (RdRp)) ➢ 1-1.5 mm explant ➢ Screening of transgenic poinsettia plants Department of FLA 62 4/22/2021 Charke et al., 2008
  • 63. Figure 14: Somatic embryogenesis in poinsettia cv. Millenium 4/22/2021 Department of FLA 63 Charke et al., 2008
  • 64. Table 12: Summary of five Agrobacterium-mediated transformation experiments on poinsettia cv. Millenium with pCP, pR2 and pR3 constructs Experiment a No. of explants No. of regenerate d plants No. of transformantsb Transformation efficiency (%)c 1 (CP) 185 54 3 1.6 2 (R3) 132 69 3 2.3 3 (R3) 172 66 6 3.5 4 (R2) 254 21 3 1.2 5 (R2) 125 18 3 2.4 a CP, R3, and R2 represent transformation experiments with constructs pCP, pR2 and pR3, respectively b Transformants verified by PCR and Southern blot analysis c Number of transformants/total number of explants transformed 4/22/2021 Department of FLA 64 868 228 18 9 6 Charke et al., 2008 2.1
  • 65. Figure 15: PCR analysis. PCR positive transformants detected with primer pairs for (a) CP, (b) R2 and (c) R3 fragments respectively. Figure 16: Southern blot analysis transformants carrying pCP, pR2 and pR3 constructs. 4/22/2021 Department of FLA 65 Charke et al., 2008
  • 66. Table 13: Immunological detection of PnMV on non-transformed and transformed poinsettia plants inoculated with PnMV 4/22/2021 Construct Transgenic plant a ELISAb 6 wpi 10wpi R2 72-1 0.1 0.1 72-2 0.1 0.2 R3 18-1 0.1 0.2 40B 0.8 2.4 41-2 0.5 2.6 62-1 0.1 0.2 41-5 0.7 2.8 CP 11-1 0.1 0.2 3-1 0.1 0.1 Control + 1 0.8 2.8 2 0.8 2.7 Department of FLA 66
  • 67. INFERENCE ➢ Develop Agrobacterium tumefaciens-mediated transformation of poinsettia, Euphorbia pulcherrima ➢ Transgenic PnMV resistant transgenic lines expressing PnMV-derived hairpin RNA constructs Department of FLA 67 4/22/2021
  • 68. ➢ Pathogen targeted resistance ➢ Integration of components that specifically target viral genes and their products ➢ Achieved by: ➢ Ribosome inactivating protein ➢ Interferons ➢ Ribozymes ➢ Host resistance ➢ Integration of existing host resistance (R) genes into non- resistant hosts Figure 17: Antiviral activities of interferon` 4/22/2021 Department of FLA 68 Kawazu et al., 2009
  • 69. Viruses that Enhance the Aesthetics of Some Ornamental Plants 69 Tulip (TBV) Camellia (CYMV) Nandina (NSPV) Canna (CYMV)
  • 70. 70 (A) Viola sp. (CMV); (B) coleus (CMV) (C) Geranium (PFBV) (D) Angelonia sp. (AFBV) (E) Impatiens (IFBV)
  • 71. Table 14: List of selected viruses that enhance the aesthetics of some ornamental plants 4/22/2021 Department of FLA 71 Rodrigo et al., 2012
  • 72. CONCLUSION ➢ Preventive measures are the most general approach to control viral diseases ➢ Indirect methods - use of modified cultural practices, use of virus-free planting materials, application of insecticides and oils for control, transgenic approach, cross protection etc. ➢ A single approach to control is unwise; integrated disease management is the best strategy to combat viral diseases in ornamental crops. 4/22/2021 Department of FLA 72
  • 73. 4/22/2021 Department of FLA 73 THANK YOU