Building and using the MarineSPEED dataset
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Presented at the LifeWatch users & stakeholders meeting in January 2018. Abstract: We present here MarineSPEED, a benchmark dataset for marine species distribution modelling. Using this dataset we showed that while temperature is a relevant predictor of global marine species distributions, considerable variation in predictor relevance is linked to the species distribution modelling (SDM) set-up. This benchmark dataset (MarineSPEED) was created by combining records from OBIS and GBIF with environmental data from Bio-ORACLE and MARSPEC and taxonomic information from WoRMS. Predictor relevance was analysed under different variations of SDMs for all combinations of predictors from eight correlation groups.
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Building and using the MarineSPEED dataset
- 1. Building and using the MarineSPEED benchmark dataset Samuel Bosch LifeWatch.be Users and Stakeholders Event 26/01/2018, Ostend, Belgium
- 2. What? Why? Who? Where? When? How? What did we learn? What’s next?
- 3. Acanthaster planci (Linnaeus, 1758) Image by J. Hanson
- 4. - 514 species - 18 phyla - 2 million distribution records A benchmark dataset for presence- only species distribution modelling
- 5. Image by: Université de Lausanne Species field observations Environmental data Model fitting Predicted species distributions
- 6. Acanthurus blochii (Valenciennes, 1835) Image by B. Harry
- 8. Eretmochelys imbricata(Linnaeus, 1766) Image by magicOlf
- 10. Octopus rubescens (Berry, 1953) Image by J. Kirkhart
- 12. Acropora palifera (Lamarck, 1816) Image by MDC Seamarc Maldives
- 13. Summer 2014 Image by G. Crescoli
- 20. Dasyatis brevicaudata (Hutton, 1875) Image by Alpha from Melbourne
- 25. MarineSPEED Environmental data Occurrences Sampling bias Cross- validation Correlation groups # of predictors SDM Algorithms Metrics Ranking method Shore distance Bathymetry SST (range) Salinity Calcite pH Chlorophyll a (mean) Chlorophyll a (min) Chlorophyll a (max) Chlorophyll a (range) Diffuse attenuation (mean) Diffuse attenuation (min) Diffuse attenuation (max) SST (mean) PAR (mean) PAR (max) Phosphate Nitrate Silicate Shoredistance Bathymetry SST(range) Salinity Calcite pH Chlorophylla(mean) Chlorophylla(min) Chlorophylla(max) Chlorophylla(range) Diffuseattenuation(mean) Diffuseattenuation(min) Diffuseattenuation(max) SST(mean) PAR(mean) PAR(max) Phosphate Nitrate Silicate Chlorophyl l a group SST group
- 26. Ulva lactuca (Linnaeus, 1753) Image by H. Krisp
- 31. Sepia officinalis (Linnaeus, 1758) Image by H. Hillewaert
- 33. Thanks
Editor's Notes
- Building and using the MarineSPEED benchmark dataset abstract: We present here MarineSPEED, a benchmark dataset for marine species distribution modelling. Using this dataset we showed that while temperature is a relevant predictor of global marine species distributions, considerable variation in predictor relevance is linked to the species distribution modelling (SDM) set-up. This benchmark dataset (MarineSPEED) was created by combining records from OBIS and GBIF with environmental data from Bio-ORACLE and MARSPEC and taxonomic information from WoRMS. Predictor relevance was analysed under different variations of SDMs for all combinations of predictors from eight correlation groups. Your presentation should include: An introduction about your project Your research question(s) Which LifeWatch.be infrastructure you used and which method(s) Your results Your future research plans
- Who was involved? What happened? Where did it take place? When did it take place? Why did that happen?
- FEBRUARY 2015
- A website
- FEBRUARY 2016
- More than 5 million models