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Metabolic Engineering 4, 12–21 (2002) 
doi:10.1006/mben.2001.0204, available online at http://www.idealibrary.com on 
Metabolic Engineering of Fatty Acid Biosynthesis in Plants 
numerous variations on this theme exist in nature particu-larly 
with regard to additional functional groups such as 
hydroxy, epoxy, cyclopropene, or acetylenic. Plants repre-sent 
a large reservoir of fatty acid diversity, synthesizing at 
least 200 different types of fatty acids (van de Loo et al., 
1993). Human use, however, has been predominantly 
restricted to a select few fatty acids that accumulate in 
domesticated plants. The four most important oilseed crops 
are, in descending order, soybean, oil palm, rapeseed, and 
sunflower, which together account for 65% of current 
worldwide vegetable oil production (Gunstone, 2001). The 
abundant fatty acids produced in these major commercial 
oilseeds comprise just 4 of the > 200 possibilities, namely 
linoleate, palmitate, laurate, and oleate. 
Why Plant Oils Are Attractive Targets for Metabolic 
Engineering 
Metabolic engineering of plant oils has attracted indus-trial 
and academic researchers for several reasons. First, 
although the fatty acid content and composition of plant 
membranes are highly conserved, seed oils vary greatly 
among plant species. This suggests that the storage form of 
1096-7176/02 $35.00 
12 © 2002 Elsevier Science 
⁄ All rights reserved. 
Jay J. Thelen and John B. Ohlrogge 
Department of Plant Biology, Michigan State University, East Lansing, Michigan 48824 
Received June 28, 2001; accepted August 22, 2001 
Fatty acids are the most abundant form of reduced carbon chains 
available from nature and have diverse uses ranging from food to 
industrial feedstocks. Plants represent a significant renewable source 
of fatty acids because many species accumulate them in the form of 
triacylglycerol as major storage components in seeds. With the 
advent of plant transformation technology, metabolic engineering of 
oilseed fatty acids has become possible and transgenic plant oils 
represent some of the first successes in design of modified plant pro-ducts. 
Directed gene down-regulation strategies have enabled the 
specific tailoring of common fatty acids in several oilseed crops. In 
addition, transfer of novel fatty acid biosynthetic genes from non-commercial 
plants has allowed the production of novel oil composi-tions 
in oilseed crops. These and future endeavors aim to produce 
seeds higher in oil content as well as new oils that are more stable, are 
healthier for humans, and can serve as a renewable source of indus-trial 
commodities. Large-scale new industrial uses of engineered 
plant oils are on the horizon but will require a better understanding of 
factors that limit the accumulation of unusual fatty acid structures in 
seeds. © 2002 Elsevier Science 
INTRODUCTION 
Plant oils represent a vast renewable resource of highly 
reduced carbon. Current world vegetable oil production is 
estimated at 87 million metric tons with an approximate 
market value of 40 billion U.S. dollars (Gunstone, 2001). 
Currently, the majority of vegetable oil goes directly to 
human consumption and as much as 25% of human caloric 
intake in developed countries is derived from plant fatty 
acids (Broun et al., 1999). In addition to their importance in 
human nutrition, plant fatty acids are also major ingre-dients 
of nonfood products such as soaps, detergents, 
lubricants, biofuels, cosmetics, and paints (Ohlrogge, 1994). 
The demand for vegetable oils has increased steadily in 
recent years (Gunstone, 2001) but production capacity to 
meet this demand is more than adequate and prices of 
vegetable oils have remained below or near $0.6 per 
kilogram. This low cost of production has stimulated 
interest in use of vegetable oils as renewable alternatives to 
petroleum-derived chemical feedstocks. 
Fatty acids stored in plant seeds are usually unbranched 
compounds with an even number of carbons ranging from 
12 to 22 and with 0 to 3 cis double bonds.1 However, 
1 Note on lipid nomenclature. A simple shorthand notation based on 
molecule length and the number and position of double bonds has been 
developed to designate fatty acids. For example, the common monounsa-turated 
fatty acid oleic acid (octadecenoic acid) is designated 18:1. The first 
value, 18, represents the number of carbons. The second value, 1, indicates 
the number of double bonds. In addition, the position of the double bonds, 
counting from the carboxyl group is designated by delta (D) and oleic acid 
can be more fully designated as 18:1 D9. The double bonds in naturally 
occurring fatty acids are almost exclusively cis isomers, and usually no 
designation for the type of double bond is used unless it is a trans isomer, as 
in 16:1 D3t. Some authors also designate the positions of the double bonds 
relative to the terminal methyl carbon. Thus, an omega-3 fatty acid con-tains 
a double bond 3 carbons from the methyl end of the fatty acid (e.g., 
18:3 D9, 12, 15 is an omega-3 fatty acid). The position at which a fatty acid 
is esterified to the glycerol backbone of glycerolipids is designated sn-3 (the 
terminal hydroxyl that is phosphorylated in glycerol 3-phosphate), sn-2 
(the central hydroxyl), and sn-1 (the terminal hydroxyl that is not 
phosphorylated).
fatty acids is tolerant to changes in chemical structure and is 
a good target for genetic manipulations that are unlikely to 
disturb the physiology of the plant. Second, up to one-third 
of plant oil is already used for nonfood applications and the 
chemical industry is familiar with fatty acid chemistry and 
applications. Third, as noted above, over 200 different 
fatty acid structures with attractive functional properties 
occur in plants. In many cases the pathways that produce 
these structures have been identified (review: Voelker and 
Kinney, 2001). Finally, rising costs of imported petroleum 
coupled with efforts to move toward renewable resources 
suggest good long-term prospects for increased use of plant 
oils to provide biobased alternatives to petroleum. 
Because plant oils have broad uses in both food and 
nonfood applications the goals of plant oilseed biotech-nologists 
are diverse. The major goals can be summarized 
as: 
• Increase content of ‘‘healthy’’ fatty acids and reduce 
‘‘unhealthy’’ fatty acids. 
• Improve oil stability to expand applications and 
reduce the need for hydrogenation. 
• Expand the repertoire of fatty acids available at low 
cost and high volume through exploitation of genetic 
diversity and enzyme engineering. 
• Increase oil content to reduce production costs. 
Some success has been achieved in reaching all of these 
goals. In at least two cases, this has led to new commercial 
crops and thus oilseed engineering has led the way toward a 
new generation of agricultural products whose traits have 
been enhanced through metabolic engineering. In other 
cases attempts to modify plant oils have had disappointing 
outcomes that reveal our ignorance of lipid biochemistry 
and seed metabolism. This review discusses some recent 
advances toward the goal of engineering qualitative and 
quantitative fatty acid traits in plants and some of the 
challenges that have emerged. 
Overview of Fatty Acid and Triacylglycerol Biosynthesis 
in Plants 
In plants, the reactions for de novo fatty acid synthesis 
(FAS)2 are located in plastids (Ohlrogge et al., 1979), which 
are plant-specific organelles bound by an envelope double 
membrane. Priming and elongation of nascent acyl chains 
requires acetyl- and malonyl-CoA, respectively, as direct 
precursors (Fig. 1A). The fatty acid synthase machinery is 
2 Abbreviations used: ACP, acyl carrier protein; ACCase, acetyl-CoA 
carboxylase; BC, biotin carboxylase; CHD, coronary heart disease; ER, 
endoplasmic reticulum; FAS, fatty acid synthesis; KAS, 3-ketoacyl-ACP 
synthase; LPAAT, lysophosphatidic acid acyltransferase; TAG, triacyl-glycerol. 
Metabolic Engineering 4, 12–21 (2002) 
doi:10.1006/mben.2001.0204 
similar to prokaryotes in that the enzymatic components are 
separable polypeptides rather than large multifunctional 
polypeptides as found in animals and fungi. The series of 
reactions necessary for de novo synthesis of fatty acids, up to 
18 C in length, has been elucidated and is discussed in 
detail elsewhere (Schultz and Ohlrogge, 2001; Voelker and 
Kinney, 2001). The first desaturation step for fatty acids is 
catalyzed by a plastidial stearoyl-acyl carrier protein (ACP) 
desaturase. Termination of plastidial fatty acid chain 
elongation is catalyzed by acyl-ACP thioesterases, which 
hydrolyze acyl chains from ACP. After termination, free 
fatty acids are activated to CoA esters, exported from the 
plastid, and assembled into glycerolipids at the endoplasmic 
reticulum (ER). In addition, further modifications (desatu-ration, 
hydroxylation, elongation, etc.) occur in the ER 
while acyl chains are esterified to glycerolipids or CoA 
(Fig. 1B). In developing seeds, the flux of acyl chains in the 
ER eventually leads to esterification on all three positions of 
glycerol to form triacylglycerol (TAG). The low polarity of 
TAG is believed to result in the accumulation of this lipid 
between bilayer leaflets leading to the budding of storage 
organelles termed oil bodies. 
TAILORING OFCOMMONFATTY ACIDS 
IN OILSEED CROPS 
Modification of naturally occurring common fatty acids 
found in oilseed crops has led to major technical achieve-ments 
and a commercial product in transgenic high-oleic 
soybean oil. Simply by overexpressing or suppressing single 
genes it has been possible to make large compositional 
changes (Table 1). Because seed-specific promoters are used 
the changes have been restricted to the storage oils of seeds, 
which appear to tolerate a wide range of oil physical 
properties. 
Current medical understanding indicates a strong impact 
of dietary fatty acids on cardiovascular disease and 
human health (Hu et al., 2001). Consequently, there is 
much interest in tailor-producing healthier vegetable oils 
and such products may help to balance consumer opposi-tion 
to ‘‘GMO’’ foods. One health concern regarding 
vegetable oil-derived food is the presence of trans-unsa-turated 
fatty acids. Most vegetable oil used for food 
applications is partially or fully hydrogenated during pro-cessing 
to make the oil semisolid for spreads and also 
to increase oxidative stability during storing or frying 
(Kinney, 1996). Industrial hydrogenation increases satu-rated 
fatty acid content and also results in production of 
trans-isomers of unsaturated fatty acids that are normally 
not found in vegetable oils and have been associated with 
coronary heart disease (Broun et al., 1999). For many 
13 
Fatty Acid Biosynthesis
FIG. 1. Fatty acid synthesis, modification, and assembly into triacylglycerols in plants. Numbers refer to reactions that have been modified in 
transgenic plants and are described in Table 1. (A) Simplified scheme of reactions of plastid fatty acid synthesis. In oilseeds, fatty acid synthesis is 
terminated by acyl-ACP thioesterases (FatA and FatB classes), which release free fatty acids, allowing their export from the plastid and reesterifica-tion 
to CoA at the plastid envelope. (B) Simplified scheme of reactions for modification of fatty acids in oilseeds and their assembly into triacylgly-cerols. 
After activation to CoA, fatty acids formed in the plastid can be sequentially esterified directly to glycerol 3-phosphate (G-3-P) to produce 
lysophosphatidic acid (LPA), phosphatidic acid (PA), diacylglycerol, and triacylglycerol. However, in most oilseeds the major flux of acyl chains 
involves movement through phosphatidylcholine (PC) pools where modifications such as further desaturation and hydroxylation occur. Only in jojoba 
or plants transformed with jojoba genes are wax esters formed in seeds. 
food applications, vegetable oils with a reduced amount of 
trans-unsaturated fatty acids are desirable to improve 
human health. This has been achieved using strategies 
such as cosuppression, antisense, and RNA interference to 
down-regulate endogenous stearoyl-ACP desaturase genes 
in soybean, cotton, and Brassica oilseeds (Table 1). In 
these plants, levels of stearic were increased up to 40% to 
provide a semisolid margarine feedstock without the need 
for hydrogenation. 
An oxidatively stable liquid oil low in saturated fatty 
acids was also produced in soybean by suppression of the 
oleoyl desaturase (Kinney, 1996). Oleic acid content was 
increased up to 86%, 18:2 content was reduced from 55% 
to less than 1%, and saturated fatty acids were reduced to 
10%. This oil has been produced commercially and is 
extremely stable for high-temperature frying applications. 
In addition, its stability matches that of mineral oil-derived 
lubricants and therefore nonfood uses as bio-degradable 
lubricants are under way. An added benefit to 
consumers from future use of engineered high-oleic oils in 
foods may be a reduction in coronary heart disease (CHD) 
associated with high omega-6 fatty acid consumption. In 
recent years evidence has accumulated that the balance of 
omega-3 and omega-6 unsaturated fatty acids in diets 
influences the risk of CHD (Hu et al., 2001). The domi-nance 
of plant oils with high omega-6 18:2 in many diets 
has led to omega-6/omega-3 consumption ratios near 
10:1, whereas populations that consume ratios near 1:1 
(e.g., Greenland, Japan) have strikingly lower incidence of 
CHD. 
ENGINEERING OF UNUSUAL FATTY ACIDS 
IN OILSEED CROPS 
Among the approximately 200 fatty acid structures 
produced by plants are several that might find wide use if 
available in high quantity and at low cost. Included in this 
list are hydroxy, epoxy, conjugated, and acetylenic fatty 
acids, all of which result from the action of enzymes 
closely related to the ubiquitous oleoyl desaturase (Broun 
et al., 1998). These fatty acids have interest because they 
provide a second reactive functional group to a hydro-carbon 
chain and offer opportunities for polymerizations 
or other chemical modifications. Therefore, considerable 
interest has developed in engineering high-yielding oilseeds 
to produce these or other specialty fatty acids and in a few 
Metabolic Engineering 4, 12–21 (2002) 
doi:10.1006/mben.2001.0204 
14 
Thelen and Ohlrogge
TABLE 1 
Selected Examples of Fatty Acid Engineering in Transgenic Plants 
Engineered reaction(s) 
Metabolic Engineering 4, 12–21 (2002) 
doi:10.1006/mben.2001.0204 
Engineered Transgenic Max. produced Gene 
fatty acid plant (mol %) Reaction (number) Gene source regulation Reference 
Caprylic, capric Brassica napus 38 Acyl-ACP thioesterase (1) Cuphea Up Dehesh et al., 1996 
Lauric Brassica napus 58 Acyl-ACP thioesterase (2) California bay Up Voelker et al., 1996 
Lauric Arabidopsis 24 Acyl-ACP thioesterase (2) California bay Up Voelker et al., 1992 
Palmitic Arabidopsis 39 Acyl-ACP thioesterase (3) Arabidopsis Up Dormann et al., 2000 
Palmitic Brassica napus 34 Acyl-ACP thioesterase (3) Cuphea Up Jones et al., 1995 
Stearic Soybean 30 Stearoyl-ACP D-9(5) and Soybean Down Kinney, 1996 
oleoyl-D-12 desaturase (7) 
Stearic Brassica napus 40 Stearoyl-ACP D-9 desat (5) Brassica Down Knutzon et al., 1992 
Stearic Cotton 38 Stearoyl-ACP D-9 desat (5) Cotton Down Liu et al., 2000 
Stearic Brassica napus 22 Acyl-ACP thioesterase (4) Mangosteen Up Hawkins and Kridl, 1998 
Petroselinic Tobacco 4 Palmitoyl-ACP D-4 desat (6) Coriander Up Cahoon et al., 1992 
Oleic Soybean 86 Oleoyl-D-12 desaturase (7) Soybean Down Kinney, 1996 
Oleic Brassica napus 89 Oleoyl-D-12 desaturase (7) Brassica Down Stoutjesdijk et al., 2000 
Oleic Cotton 77 Oleoyl-D-12 desaturase (7) Cotton Down Liu et al., 2000 
Oleic Brassica juncea 73 Oleoyl-D-12 desaturase (7) Brassica Down Stoutjesdijk et al., 2000 
Oleic Arabidopsis 54 Oleoyl-D-12 desaturase (7) Arabidopsis Down Okuley et al., 1994 
c-Linolenic (18:3 w-6) Brassica napus 47 Oleoyl-D-6 and D-12 desat (7) Mortierella apina Up Ursin et al., 2000 
c-Linolenic acid Tobacco 1 Oleoyl-D-6 desaturase (7) Cyanobacteria Up Reddy and Thomas, 1996 
Eleostearic, parinaric Soybean 17 Conjugase (11) Momordica Up Cahoon et al., 1999 
D-5 Eicosenoic Soybean 18 b-Ketoacyl-CoA synthase (8), Meadowfoam Up Cahoon et al., 2000 
acyl-CoA desaturase (9) 
Hydroxy fatty acids Arabidopsis 30 Oleate-12-hydroxylase (10) Castor, Lesquerella Up Smith et al., 2000 
Ricinoleic Arabidopsis 17 Oleate-12-hydroxylase (10) Castor Up Brown and Somerville, 1997 
Acetylenic Arabidopsis 25 Acetylenase (11) Crepis Up Lee et al., 1998 
12, 13-Epoxy-cis-9-oleic Arabidopsis 15 Epoxygenase (11) Crepis Up Singh et al., 2000 
Wax esters Arabidopsis 70 b-ketoacyl synthase (12), Jojoba Up Lardizabal et al., 2000 
acyl-CoA reductase (13), 
wax synthase (14) 
Note. The numbers after the names of engineered reactions refer to Fig. 1A and 1B. Reactions 1 to 6 occur in the plastid and reactions 7 to 14 
occur at the ER or other nonplastidial membrane. 
cases such engineering efforts have been successful (sum-marized 
in Table 1). In the following we discuss selected 
examples of the engineering of novel fatty acids in plants. 
Engineering of Fatty Acid Chain Length 
Plants that accumulate short- to medium-chain (C8 to 
C14) fatty acids in seed triacylglycerol have seed-specific 
acyl-ACP thioesterase activities toward the corresponding 
acyl-ACPs (Pollard et al., 1991; Davies, 1993). For example, 
California bay and Cuphea seeds accumulate up to 90% 
short chain saturated fatty acids in triacylglycerol. In 
groundbreaking studies, expression of a California bay 
thioesterase in the seeds of non-laurate (12:0)-accumu-lating 
plants, Arabidopsis and Brassica napus (rapeseed), 
resulted in the ‘‘short-circuiting’’ of acyl chain elongation 
to produce laurate up to 24 and 58% of total seed fatty 
acids, respectively (Table 1; Voelker et al., 1992, 1996). 
Position analysis of TAG revealed that laurate was present 
at both sn-1 and sn-3 positions but not the sn-2 position. 
Lack of laurate at the sn-2 position was attributed to the 
high specificity of lysophosphatidic acid acyltransferase 
15 
Fatty Acid Biosynthesis
(LPAAT). Further increases in laurate yield seemed pos-sible 
if all three positions of TAG were acylated with 
laurate. The introduction of a laurate-specific coconut 
LPAAT into rapeseed containing the California bay 
thioesterase resulted in further increases in laurate levels, 
up to 67% total fatty acid, by catalyzing laurate acylation 
at the sn-2 position of TAG (Knutzon et al., 1999). This 
level of laurate is higher than observed in palm kernel, a 
commercial source of laurate. Applications of high-laurate 
rapeseed oil include detergents and soaps, a large market 
that is currently met by imported palm kernel and coconut 
oils. 
The previous example demonstrates that the transfer of 
a single gene into rapeseed confers laurate accumulation at 
levels very similar to California bay seed. However, such 
success with a single gene may be the exception rather 
than the rule. For example, when a medium-chain thio-esterase 
from Cuphea hookeriana was introduced into 
rapeseed, caprylate (8:0) accumulated to only 12% in 
transgenic rapeseed, while Cuphea contains 50% caprylate 
(Dehesh et al., 1996). In another investigation, expression 
of elm or nutmeg FatB thioesterases in rapeseed did not 
result in seed containing 65% caprate (10:0) or 80% 
laurate as observed in these two respective plants but 
rather 4% caprate and 20% laurate, respectively (Voelker 
et al., 1997). In these examples short-chain fatty acids were 
significantly lower in transgenic hosts compared to donor 
species. One explanation for these differences is the low 
availability of short-chain acyl-ACP pools for thioesterase 
termination in non-short-chain-accumulating plants. This 
was addressed by crossing plants expressing condensing 
enzymes (3-ketoacyl-ACP synthase, KAS) from Cuphea 
that have unique specificity for 6:0-(caproic) and 8:0-acyl- 
ACPs with lines carrying Cuphea FatB thioesterases 
(Leonard et al., 1998; Dehesh et al., 1998). All lines carry-ing 
both a Cuphea KAS and a Cuphea thioesterase had 
higher levels of short-chain fatty acids than the single-transgene 
parents. Enhancement of short-chain fatty acid 
accumulation was attributed to the short-chain specificity 
of the Cuphea KAS, effectively increasing 10:0- and 12:0- 
acyl-ACP pool sizes for short-chain thioesterase cleavage. 
Thus obtaining significant amounts of short-chain fatty 
acids in TAG may require multiple genes which increase 
the substrate pools for the thioesterase as well as short-chain- 
specific acyltransferases which can assemble the 
novel fatty acids into TAG. 
Plants Sometimes Fight Back against Metabolic 
Engineering Schemes 
An unexpected lesson learned from the study of laurate-producing 
transgenic plants described above was that high-level 
production of novel fatty acids can induce a futile 
cycle of fatty acid synthesis and degradation (Fig. 2). 
By analyzing hundreds of independent transgenic lines, 
Voelker et al., (1996) found that laurate production in 
canola seeds increased linearly up to about 35 mol% with 
increased lauroyl-ACP thioesterase expression. However, 
to achieve 58 mol% laurate required 10-fold higher 
levels of the introduced enzyme, raising the question of 
what limits higher laurate accumulation. Eccleston and 
Ohlrogge (1998) examined these high-laurate canola seeds 
and found that enzymes for medium-chain fatty acid 
b-oxidation were increased severalfold, as were malate 
dehydrogenase and isocitrate lyase, which participate in 
the glyoxylate cycle for fatty acid carbon reutilization. 
These and other results led to the conclusion that high 
production of unusual fatty acids in transgenic hosts can 
induce pathways for their breakdown. Surprisingly, seed 
oil yield was not reduced, which led to the additional 
discovery that the FAS pathway was also induced, 
presumably to compensate for the loss by oxidation of 
medium-chain fatty acids. 
Production of Waxes 
Long-chain wax esters were once harvested from sperm 
whales and were a major ingredient of industrial lubri-cants 
and transmission fluids. Banning of whale harvests 
led to searches for alternative biological sources of such 
structures. Jojoba, a desert shrub found in the American 
southwest, is the only plant species known to accumulate 
waxes (up to 60% dry weight) rather than TAG as a seed 
FIG. 2. Scheme for a futile cycle of production and oxidation of 
lauric acid in transgenic canola, based on results of Eccleston and 
Ohlrogge (1998). Transgenic seeds that produce 58 mol% lauric acid 
were found to have increased activity of lauric acid b-oxidation, 
isocitrate lyase, and malate dehydrogenase. In addition, up to 50% of 
[14C]acetate added to seeds was recovered in malate, sucrose, and other 
water-soluble metabolites. These results suggest that up to half the lauric 
acid produced is degraded and returned to intermediate pools in a futile 
cycle of fatty acid synthesis and turnover. 
Metabolic Engineering 4, 12–21 (2002) 
doi:10.1006/mben.2001.0204 
16 
Thelen and Ohlrogge
storage reserve. These waxes are mostly derived from 
C20–C24 monounsaturated fatty acids and alcohols and 
are synthesized by the elongation of oleate followed by 
reduction to alcohols by a fatty acid reductase (Metz 
et al., 2000). The wax storage lipid is formed by a fatty acyl- 
CoA:fatty alcohol acyltransferase, also referred to as wax 
synthase. The reductase and acyltransferase were purified 
from jojoba and the corresponding cDNAs cloned (Metz et 
al., 2000; Lardizabal et al., 2000). Coordinated expression 
of three genes—a Lunaria annua long-chain acyl-CoA 
elongase and the jojoba reductase and acyltransferase—in 
Arabidopsis resulted in wax production at up to 70% of the 
oil present in mature seeds (Lardizabal et al., 2000). 
The high levels of accumulation indicated that all the genes 
necessary for this trait were identified. If this trait can be 
successfully transferred to commercial crops this would 
represent a large potential source of waxes for a variety of 
applications, including cosmetics and industrial lubricants. 
Production of Novel Monoenoic Fatty Acids 
Introduction of the first double bond in fatty acids occurs 
in plastids by a soluble desaturase specific for acyl-ACP 
substrates. The location of this double bond can vary 
depending upon specificity of the plastidial acyl-ACP desa-turase. 
Typically the double bond is inserted between 
carbons 9 and 10 of a stearoyl-ACP substrate. However, 
seed-specific plastidial acyl-ACP desaturases that intro-duce 
double bonds at the D4, D6, or D9 position of 
palmitoyl-ACP have been identified from coriander, 
black-eyed Susan vine (Thunbergia alata), and cat’s claw, 
respectively, which accumulate these unusual monoenes 
up to 80% in seed oil (Cahoon et al., 1992, 1994a, 1998). 
Double-bond position on palmitate and stearate alters the 
physical properties such that unusual monoenes have 
potentially different commercial uses including monomer 
feedstocks for specific nylon polymer applications or as 
higher melting unsaturated fatty acids for margarines. 
Since monomers for most nylons are derived from 
the petrochemical industry there is interest in plants as 
renewable sources for these precursors. To achieve wide use 
of such fatty acids it will be essential to move the unusual 
monoene trait into high-yielding oilseed crops from 
which the oil can be produced at low cost. However, intro-duction 
of a coriander D4 16:0-ACP desaturase or a 
Thunbergia D6 16:0-ACP desaturase into tobacco callus 
and Arabidopsis seed, respectively, resulted in less than 
10% accumulation of these unusual fatty acids (Cahoon 
et al., 1992; Schultz and Ohlrogge, 2001). The reason for the 
low levels of unusual monoene production in non-native 
plants remains unknown and represents a major challenge 
Metabolic Engineering 4, 12–21 (2002) 
doi:10.1006/mben.2001.0204 
in our understanding of plant lipid synthesis. Some evidence 
suggests specific isoforms of the cofactors, ferredoxin and 
ACP, may be important for production of unusual monoenes 
(Suh et al., 1999; Schultz et al., 2000). In addition, 
coriander and Thunbergia unusual monoenes are incor-porated 
into phosphatidylcholine pools prior to accu-mulation 
into TAG (Cahoon et al., 1994b; Schultz and 
Ohlrogge, 2000). Coriander also expresses KAS (Mekhedov 
et al., 2001), thioesterase (Dörmann et al., 1994), and 
acyltransferase (Dutta et al., 1992) activities specific for 
these unusual fatty acids, which are likely important for 
their accumulation in TAG. 
In a recent investigation, transgenic expression of an 
engineered castor D9 18:0-ACP desaturase (with improved 
specificity toward 16:0-ACP) in Arabidopsis seed resulted 
in 13% of total seed fatty acids as 16:1D9 and elonga-tion 
products 18:1D11 and 20:1D13 (Cahoon and Shanklin, 
2000). Expression of this same desaturase in fab1 Arabi-dopsis 
mutants containing a lesion in KAS II, which cata-lyzes 
the elongation of 16:0-ACP to 18:0-ACP, resulted in 
up to 30% accumulation of the same three fatty acids. 
Thus availability of 16:0 ACP substrate is likely one limi-tation 
for unusual monoene production. In addition, this 
study suggests that novel acyl-ACP desaturases produced 
by protein engineering strategies may be more effective 
than enzymes derived from wild species. 
Product Yield: The New Challenge in Oilseed 
Metabolic Engineering 
Identification of key genes as described earlier and their 
transfer into transgenic crops have occupied many aca-demic 
and industrial laboratories for the past 10–15 years. 
However, in many cases this is not the central problem 
in oilseed modification. For a new oil to be economic, 
the desired fatty acid almost always must be the major 
constituent to avoid expensive purification costs. Despite 
impressive successes with medium-chain fatty acids and 
wax esters, in most cases in which a newly identified gene 
has been transferred into another oilseed, the proportion 
of the desired product in the transgenic host has been 
considerably lower than in the wild species from which 
the gene was obtained. The activity of the introduced 
enzyme has generally not been limiting, so it is necessary to 
determine what other factors limit product accumulation. 
Accumulation of unusual fatty acids to levels found 
naturally will likely require introduction of activities in 
addition to those directly responsible for synthesizing the 
unusual fatty acid. One possible explanation for this is the 
presence of a redundant set of biosynthetic enzymes for 
novel fatty acids in seeds. Such a scenario would explain 
17 
Fatty Acid Biosynthesis
differences in substrate specificity between seed-specific 
lipid biosynthetic enzymes and those involved in general 
cell lipid synthesis. Presumably this is because most 
unusual fatty acids possess physical properties distinctly 
different from fatty acids commonly found in membranes, 
and thus plants must possess ‘‘editing’’ or exclusion 
mechanisms to prevent the accumulation of these fatty 
acids in lipid bilayers (reviewed in Volker and Kinney, 
2001). Addressing these issues will require more knowl-edge 
of the cellular biochemistry in oil-accumulating 
tissues than is currently available. 
PROGRESS TOWARD INCREASING SEED 
OIL CONTENT 
For both edible and industrial uses, an increase in seed 
oil content is desirable and has been a major goal of 
oilseed engineering. However, to be economically useful, 
such a change must not come at the expense of overall 
seed yield or at the loss of other high-value components. 
For example, soybean is the largest source of vegetable oil, 
comprising 30% of the world market, and now consti-tutes 
over 80% of all dietary vegetable oils in the United 
States. Although termed an oilseed, soybean contains only 
18–22% oil on a seed dry-weight basis and is grown prin-cipally 
as a high-protein meal for animal feeds. Thus, 
increasing oil in soybean will in most cases not be useful if 
it comes at the expense of high-value soy protein that 
drives the crop’s economics. By comparison, other oilseed 
crops (except cotton) are grown primarily for their oil and 
produce seeds with 40–60% oil. The wide range of seed oil 
percentage observed in nature suggests that this pathway 
might be amenable to metabolic engineering, particularly 
in ‘‘low-oil’’ oilseeds, provided the key mechanisms which 
control oil content are identified. 
Production of Malonyl-CoA by Acetyl-CoA Carboxylase 
Is a Key Regulatory Step 
The committed step for de novo FAS is the production 
of malonyl-CoA catalyzed by acetyl-CoA carboxylase 
(ACCase) (Fig. 1). Malonyl-CoA production appears to be 
a potential control point for this pathway, based upon 
analysis of acyl-CoA and acyl-ACP pool sizes (Post- 
Beittenmiller et al., 1991, 1992; Roughan, 1997). Since 
malonyl-CoA levels in plastids are very low (less than 
10%) compared to acetyl-CoA, it seemed likely that up-regulating 
ACCase activity would increase flux to fatty 
acids. This has been clearly shown to be the case in 
Escherichia coli (Davis et al., 2000). The plastidial ACCase 
from most plants is a complex comprising four different 
subunits. One early effort to increase ACCase was to 
overexpress the biotin carboxylase (BC) subunit using a 
CaMV 35S promoter in tobacco. Although BC protein 
increased threefold in leaves, there was no accompanying 
increase in the amount of other ACCase subunits 
(Shintani et al., 1997) and no effect on fatty acid content 
or composition. Thus, for ACCase—unlike some other multi-enzyme 
complexes—overexpressing just one subunit does 
not increase the amount of the remaining subunits. 
Evidence that increased malonyl-CoA pools could 
increase fatty acid production was obtained by targeting a 
homomeric ACCase to rapeseed plastids (Roesler et al., 
1997). Under the control of a seed-specific promoter this 
chimeric protein resulted in higher ACCase activities and 
increased oil yield by 3–5% on a seed dry-weight basis. 
These data provided the first evidence that seed oil could 
be quantitatively enhanced by increasing the pool size of 
malonyl-CoA precursor. However, the small increase 
pointed toward additional control points for FAS. 
Overexpression of Several Individual Fatty Acid Synthase 
Enzymes Does Not Increase Flux through Fatty Acid 
Biosynthesis 
Increasing malonyl-CoA precursor pools for FAS 
resulted in only slight increases in seed oil yield. Such a 
modest improvement would suggest that another step(s) 
might be limiting. Could fatty acid synthase activities also 
be limiting FAS? Several labs have addressed this question 
by overexpressing enzymes downstream of malonyl-CoA 
production. The conclusion from these investigations is 
that up-regulation of any one enzyme does not increase 
flux through FAS. Indeed, overexpression of some activi-ties 
actually decreased FAS and fatty acid content as 
observed with the overexpression of a condensing enzyme. 
Condensation of acetyl-CoA with malonyl-ACP is 
catalyzed by KAS III. Recently, a spinach KAS III 
was expressed in tobacco and resulted in approximately 
50-fold increases in activity above control levels. Rather 
than an increase in fatty acid content a 5–10% decrease 
was observed (Dehesh et al., 2001). In the same report, a 
Cuphea KAS III expressed in rapeseed seed embryos 
resulted in a 9% decrease in fatty acid content. An 
interesting and unexpected consequence of KAS III 
overexpression was an increase in ACP protein levels in 
tobacco leaves, although other fatty acid synthase activi-ties 
were unaffected. Decreases in fatty acid content as a 
result of KAS III overexpression were attributed to 
decreased rates of de novo FAS most likely by reducing 
malonyl-CoA pools for subsequent KAS condensation 
reactions. In a related study, targeting of an E. coli 
malonyl-CoA:ACP trans-acylase to rapeseed leucoplasts 
Metabolic Engineering 4, 12–21 (2002) 
doi:10.1006/mben.2001.0204 
18 
Thelen and Ohlrogge
increased this plastid activity up to 45-fold but did not 
increase fatty acid content (Verwoert et al., 1994). 
Based upon the aforementioned and other studies it 
seems unlikely that the up-regulation of any single fatty 
acid synthase enzyme will have a major positive effect on 
FAS flux. Although not all fatty acid synthase enzymes 
have been overexpressed to determine the effect on FAS, 
substantial increases in flux will likely require up-regula-tion 
of multiple activities. This conclusion has stimulated 
more comprehensive efforts to identify transcriptional, 
protein kinase, or other regulatory factors that might 
up-regulate the entire pathway (Girke et al., 2000). 
Preliminary studies suggest that reactions late in the 
TAG biosynthetic pathway may provide increased sink 
strength that could stimulate increased fatty acid produc-tion. 
Overexpression of a yeast long-chain sn-2 acyltrans-ferase 
resulted in > 50% (dry mass/seed) increases in seed 
oil content of Arabidopsis and rapeseed (Zou et al., 
1997). Field trials of the transgenic rapeseed gave increases of 
8.1–13.5% (Katavic et al., 2000). Recently, Jako et al. 
(2001) reported that overexpression of an Arabidopsis 
diacylglycerol acyltransferase in Arabidopsis seeds can also 
increase seed oil content as well as seed weight. Together, 
these studies suggest that increased flux into oil may be 
more easily achieved by strategies targeted at the later 
steps in the pathway. It is important to note that despite 
intense efforts in this area, commercial varieties with con-sistently 
increased oil yield per hectare have not been 
achieved through transgenic means. 
CONCLUSIONS 
Engineering of FAS has progressed rapidly in the past 5 
years and has led to the commercialization or field trial of 
several modified oilseed crops. Although the engineering 
of fatty acid chain length and degree and location of fatty 
acid desaturation has at least been demonstrated in prin-ciple, 
engineering plants with increased flux through FAS 
has been difficult. This is likely due to the complexity 
associated with the engineering of primary carbon meta-bolism 
and an unclear picture of how this pathway is 
regulated in vivo. One of the challenges that lie ahead is to 
understand the mechanism for feedback inhibition of fatty 
acid production in vivo (Shintani and Ohlrogge, 1995). 
Although plants with increased seed oil and those con-taining 
nutritional supplements may have an immediate 
market niche, plants engineered to accumulate industrial 
‘‘specialty oils’’ may encounter problems and will need to 
be cost-evaluated on an individual basis (Hitz, 1999). 
Some of these potential problems include expensive pro-cessing 
costs, loss of value associated with toxicity of the 
meal by-product (a particular problem with high-value 
Metabolic Engineering 4, 12–21 (2002) 
doi:10.1006/mben.2001.0204 
soybean meal), and occasional undesirable side-effects 
resulting from major alterations in fatty acid profiles 
(Knutzen et al., 1992; Miquel et al., 1993; Miquel and 
Browse, 1994). Nevertheless, the long-term forecast of 
vegetable oils as an alternative to petroleum for chemical 
feedstocks is not fanciful. With rapid advances occurring 
in plant lipid biotechnology and the increasing cost of 
petroleum, vegetable oils will eventually provide new 
cost-effective raw materials. 
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21 
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Fatty acid

  • 1. Metabolic Engineering 4, 12–21 (2002) doi:10.1006/mben.2001.0204, available online at http://www.idealibrary.com on Metabolic Engineering of Fatty Acid Biosynthesis in Plants numerous variations on this theme exist in nature particu-larly with regard to additional functional groups such as hydroxy, epoxy, cyclopropene, or acetylenic. Plants repre-sent a large reservoir of fatty acid diversity, synthesizing at least 200 different types of fatty acids (van de Loo et al., 1993). Human use, however, has been predominantly restricted to a select few fatty acids that accumulate in domesticated plants. The four most important oilseed crops are, in descending order, soybean, oil palm, rapeseed, and sunflower, which together account for 65% of current worldwide vegetable oil production (Gunstone, 2001). The abundant fatty acids produced in these major commercial oilseeds comprise just 4 of the > 200 possibilities, namely linoleate, palmitate, laurate, and oleate. Why Plant Oils Are Attractive Targets for Metabolic Engineering Metabolic engineering of plant oils has attracted indus-trial and academic researchers for several reasons. First, although the fatty acid content and composition of plant membranes are highly conserved, seed oils vary greatly among plant species. This suggests that the storage form of 1096-7176/02 $35.00 12 © 2002 Elsevier Science ⁄ All rights reserved. Jay J. Thelen and John B. Ohlrogge Department of Plant Biology, Michigan State University, East Lansing, Michigan 48824 Received June 28, 2001; accepted August 22, 2001 Fatty acids are the most abundant form of reduced carbon chains available from nature and have diverse uses ranging from food to industrial feedstocks. Plants represent a significant renewable source of fatty acids because many species accumulate them in the form of triacylglycerol as major storage components in seeds. With the advent of plant transformation technology, metabolic engineering of oilseed fatty acids has become possible and transgenic plant oils represent some of the first successes in design of modified plant pro-ducts. Directed gene down-regulation strategies have enabled the specific tailoring of common fatty acids in several oilseed crops. In addition, transfer of novel fatty acid biosynthetic genes from non-commercial plants has allowed the production of novel oil composi-tions in oilseed crops. These and future endeavors aim to produce seeds higher in oil content as well as new oils that are more stable, are healthier for humans, and can serve as a renewable source of indus-trial commodities. Large-scale new industrial uses of engineered plant oils are on the horizon but will require a better understanding of factors that limit the accumulation of unusual fatty acid structures in seeds. © 2002 Elsevier Science INTRODUCTION Plant oils represent a vast renewable resource of highly reduced carbon. Current world vegetable oil production is estimated at 87 million metric tons with an approximate market value of 40 billion U.S. dollars (Gunstone, 2001). Currently, the majority of vegetable oil goes directly to human consumption and as much as 25% of human caloric intake in developed countries is derived from plant fatty acids (Broun et al., 1999). In addition to their importance in human nutrition, plant fatty acids are also major ingre-dients of nonfood products such as soaps, detergents, lubricants, biofuels, cosmetics, and paints (Ohlrogge, 1994). The demand for vegetable oils has increased steadily in recent years (Gunstone, 2001) but production capacity to meet this demand is more than adequate and prices of vegetable oils have remained below or near $0.6 per kilogram. This low cost of production has stimulated interest in use of vegetable oils as renewable alternatives to petroleum-derived chemical feedstocks. Fatty acids stored in plant seeds are usually unbranched compounds with an even number of carbons ranging from 12 to 22 and with 0 to 3 cis double bonds.1 However, 1 Note on lipid nomenclature. A simple shorthand notation based on molecule length and the number and position of double bonds has been developed to designate fatty acids. For example, the common monounsa-turated fatty acid oleic acid (octadecenoic acid) is designated 18:1. The first value, 18, represents the number of carbons. The second value, 1, indicates the number of double bonds. In addition, the position of the double bonds, counting from the carboxyl group is designated by delta (D) and oleic acid can be more fully designated as 18:1 D9. The double bonds in naturally occurring fatty acids are almost exclusively cis isomers, and usually no designation for the type of double bond is used unless it is a trans isomer, as in 16:1 D3t. Some authors also designate the positions of the double bonds relative to the terminal methyl carbon. Thus, an omega-3 fatty acid con-tains a double bond 3 carbons from the methyl end of the fatty acid (e.g., 18:3 D9, 12, 15 is an omega-3 fatty acid). The position at which a fatty acid is esterified to the glycerol backbone of glycerolipids is designated sn-3 (the terminal hydroxyl that is phosphorylated in glycerol 3-phosphate), sn-2 (the central hydroxyl), and sn-1 (the terminal hydroxyl that is not phosphorylated).
  • 2. fatty acids is tolerant to changes in chemical structure and is a good target for genetic manipulations that are unlikely to disturb the physiology of the plant. Second, up to one-third of plant oil is already used for nonfood applications and the chemical industry is familiar with fatty acid chemistry and applications. Third, as noted above, over 200 different fatty acid structures with attractive functional properties occur in plants. In many cases the pathways that produce these structures have been identified (review: Voelker and Kinney, 2001). Finally, rising costs of imported petroleum coupled with efforts to move toward renewable resources suggest good long-term prospects for increased use of plant oils to provide biobased alternatives to petroleum. Because plant oils have broad uses in both food and nonfood applications the goals of plant oilseed biotech-nologists are diverse. The major goals can be summarized as: • Increase content of ‘‘healthy’’ fatty acids and reduce ‘‘unhealthy’’ fatty acids. • Improve oil stability to expand applications and reduce the need for hydrogenation. • Expand the repertoire of fatty acids available at low cost and high volume through exploitation of genetic diversity and enzyme engineering. • Increase oil content to reduce production costs. Some success has been achieved in reaching all of these goals. In at least two cases, this has led to new commercial crops and thus oilseed engineering has led the way toward a new generation of agricultural products whose traits have been enhanced through metabolic engineering. In other cases attempts to modify plant oils have had disappointing outcomes that reveal our ignorance of lipid biochemistry and seed metabolism. This review discusses some recent advances toward the goal of engineering qualitative and quantitative fatty acid traits in plants and some of the challenges that have emerged. Overview of Fatty Acid and Triacylglycerol Biosynthesis in Plants In plants, the reactions for de novo fatty acid synthesis (FAS)2 are located in plastids (Ohlrogge et al., 1979), which are plant-specific organelles bound by an envelope double membrane. Priming and elongation of nascent acyl chains requires acetyl- and malonyl-CoA, respectively, as direct precursors (Fig. 1A). The fatty acid synthase machinery is 2 Abbreviations used: ACP, acyl carrier protein; ACCase, acetyl-CoA carboxylase; BC, biotin carboxylase; CHD, coronary heart disease; ER, endoplasmic reticulum; FAS, fatty acid synthesis; KAS, 3-ketoacyl-ACP synthase; LPAAT, lysophosphatidic acid acyltransferase; TAG, triacyl-glycerol. Metabolic Engineering 4, 12–21 (2002) doi:10.1006/mben.2001.0204 similar to prokaryotes in that the enzymatic components are separable polypeptides rather than large multifunctional polypeptides as found in animals and fungi. The series of reactions necessary for de novo synthesis of fatty acids, up to 18 C in length, has been elucidated and is discussed in detail elsewhere (Schultz and Ohlrogge, 2001; Voelker and Kinney, 2001). The first desaturation step for fatty acids is catalyzed by a plastidial stearoyl-acyl carrier protein (ACP) desaturase. Termination of plastidial fatty acid chain elongation is catalyzed by acyl-ACP thioesterases, which hydrolyze acyl chains from ACP. After termination, free fatty acids are activated to CoA esters, exported from the plastid, and assembled into glycerolipids at the endoplasmic reticulum (ER). In addition, further modifications (desatu-ration, hydroxylation, elongation, etc.) occur in the ER while acyl chains are esterified to glycerolipids or CoA (Fig. 1B). In developing seeds, the flux of acyl chains in the ER eventually leads to esterification on all three positions of glycerol to form triacylglycerol (TAG). The low polarity of TAG is believed to result in the accumulation of this lipid between bilayer leaflets leading to the budding of storage organelles termed oil bodies. TAILORING OFCOMMONFATTY ACIDS IN OILSEED CROPS Modification of naturally occurring common fatty acids found in oilseed crops has led to major technical achieve-ments and a commercial product in transgenic high-oleic soybean oil. Simply by overexpressing or suppressing single genes it has been possible to make large compositional changes (Table 1). Because seed-specific promoters are used the changes have been restricted to the storage oils of seeds, which appear to tolerate a wide range of oil physical properties. Current medical understanding indicates a strong impact of dietary fatty acids on cardiovascular disease and human health (Hu et al., 2001). Consequently, there is much interest in tailor-producing healthier vegetable oils and such products may help to balance consumer opposi-tion to ‘‘GMO’’ foods. One health concern regarding vegetable oil-derived food is the presence of trans-unsa-turated fatty acids. Most vegetable oil used for food applications is partially or fully hydrogenated during pro-cessing to make the oil semisolid for spreads and also to increase oxidative stability during storing or frying (Kinney, 1996). Industrial hydrogenation increases satu-rated fatty acid content and also results in production of trans-isomers of unsaturated fatty acids that are normally not found in vegetable oils and have been associated with coronary heart disease (Broun et al., 1999). For many 13 Fatty Acid Biosynthesis
  • 3. FIG. 1. Fatty acid synthesis, modification, and assembly into triacylglycerols in plants. Numbers refer to reactions that have been modified in transgenic plants and are described in Table 1. (A) Simplified scheme of reactions of plastid fatty acid synthesis. In oilseeds, fatty acid synthesis is terminated by acyl-ACP thioesterases (FatA and FatB classes), which release free fatty acids, allowing their export from the plastid and reesterifica-tion to CoA at the plastid envelope. (B) Simplified scheme of reactions for modification of fatty acids in oilseeds and their assembly into triacylgly-cerols. After activation to CoA, fatty acids formed in the plastid can be sequentially esterified directly to glycerol 3-phosphate (G-3-P) to produce lysophosphatidic acid (LPA), phosphatidic acid (PA), diacylglycerol, and triacylglycerol. However, in most oilseeds the major flux of acyl chains involves movement through phosphatidylcholine (PC) pools where modifications such as further desaturation and hydroxylation occur. Only in jojoba or plants transformed with jojoba genes are wax esters formed in seeds. food applications, vegetable oils with a reduced amount of trans-unsaturated fatty acids are desirable to improve human health. This has been achieved using strategies such as cosuppression, antisense, and RNA interference to down-regulate endogenous stearoyl-ACP desaturase genes in soybean, cotton, and Brassica oilseeds (Table 1). In these plants, levels of stearic were increased up to 40% to provide a semisolid margarine feedstock without the need for hydrogenation. An oxidatively stable liquid oil low in saturated fatty acids was also produced in soybean by suppression of the oleoyl desaturase (Kinney, 1996). Oleic acid content was increased up to 86%, 18:2 content was reduced from 55% to less than 1%, and saturated fatty acids were reduced to 10%. This oil has been produced commercially and is extremely stable for high-temperature frying applications. In addition, its stability matches that of mineral oil-derived lubricants and therefore nonfood uses as bio-degradable lubricants are under way. An added benefit to consumers from future use of engineered high-oleic oils in foods may be a reduction in coronary heart disease (CHD) associated with high omega-6 fatty acid consumption. In recent years evidence has accumulated that the balance of omega-3 and omega-6 unsaturated fatty acids in diets influences the risk of CHD (Hu et al., 2001). The domi-nance of plant oils with high omega-6 18:2 in many diets has led to omega-6/omega-3 consumption ratios near 10:1, whereas populations that consume ratios near 1:1 (e.g., Greenland, Japan) have strikingly lower incidence of CHD. ENGINEERING OF UNUSUAL FATTY ACIDS IN OILSEED CROPS Among the approximately 200 fatty acid structures produced by plants are several that might find wide use if available in high quantity and at low cost. Included in this list are hydroxy, epoxy, conjugated, and acetylenic fatty acids, all of which result from the action of enzymes closely related to the ubiquitous oleoyl desaturase (Broun et al., 1998). These fatty acids have interest because they provide a second reactive functional group to a hydro-carbon chain and offer opportunities for polymerizations or other chemical modifications. Therefore, considerable interest has developed in engineering high-yielding oilseeds to produce these or other specialty fatty acids and in a few Metabolic Engineering 4, 12–21 (2002) doi:10.1006/mben.2001.0204 14 Thelen and Ohlrogge
  • 4. TABLE 1 Selected Examples of Fatty Acid Engineering in Transgenic Plants Engineered reaction(s) Metabolic Engineering 4, 12–21 (2002) doi:10.1006/mben.2001.0204 Engineered Transgenic Max. produced Gene fatty acid plant (mol %) Reaction (number) Gene source regulation Reference Caprylic, capric Brassica napus 38 Acyl-ACP thioesterase (1) Cuphea Up Dehesh et al., 1996 Lauric Brassica napus 58 Acyl-ACP thioesterase (2) California bay Up Voelker et al., 1996 Lauric Arabidopsis 24 Acyl-ACP thioesterase (2) California bay Up Voelker et al., 1992 Palmitic Arabidopsis 39 Acyl-ACP thioesterase (3) Arabidopsis Up Dormann et al., 2000 Palmitic Brassica napus 34 Acyl-ACP thioesterase (3) Cuphea Up Jones et al., 1995 Stearic Soybean 30 Stearoyl-ACP D-9(5) and Soybean Down Kinney, 1996 oleoyl-D-12 desaturase (7) Stearic Brassica napus 40 Stearoyl-ACP D-9 desat (5) Brassica Down Knutzon et al., 1992 Stearic Cotton 38 Stearoyl-ACP D-9 desat (5) Cotton Down Liu et al., 2000 Stearic Brassica napus 22 Acyl-ACP thioesterase (4) Mangosteen Up Hawkins and Kridl, 1998 Petroselinic Tobacco 4 Palmitoyl-ACP D-4 desat (6) Coriander Up Cahoon et al., 1992 Oleic Soybean 86 Oleoyl-D-12 desaturase (7) Soybean Down Kinney, 1996 Oleic Brassica napus 89 Oleoyl-D-12 desaturase (7) Brassica Down Stoutjesdijk et al., 2000 Oleic Cotton 77 Oleoyl-D-12 desaturase (7) Cotton Down Liu et al., 2000 Oleic Brassica juncea 73 Oleoyl-D-12 desaturase (7) Brassica Down Stoutjesdijk et al., 2000 Oleic Arabidopsis 54 Oleoyl-D-12 desaturase (7) Arabidopsis Down Okuley et al., 1994 c-Linolenic (18:3 w-6) Brassica napus 47 Oleoyl-D-6 and D-12 desat (7) Mortierella apina Up Ursin et al., 2000 c-Linolenic acid Tobacco 1 Oleoyl-D-6 desaturase (7) Cyanobacteria Up Reddy and Thomas, 1996 Eleostearic, parinaric Soybean 17 Conjugase (11) Momordica Up Cahoon et al., 1999 D-5 Eicosenoic Soybean 18 b-Ketoacyl-CoA synthase (8), Meadowfoam Up Cahoon et al., 2000 acyl-CoA desaturase (9) Hydroxy fatty acids Arabidopsis 30 Oleate-12-hydroxylase (10) Castor, Lesquerella Up Smith et al., 2000 Ricinoleic Arabidopsis 17 Oleate-12-hydroxylase (10) Castor Up Brown and Somerville, 1997 Acetylenic Arabidopsis 25 Acetylenase (11) Crepis Up Lee et al., 1998 12, 13-Epoxy-cis-9-oleic Arabidopsis 15 Epoxygenase (11) Crepis Up Singh et al., 2000 Wax esters Arabidopsis 70 b-ketoacyl synthase (12), Jojoba Up Lardizabal et al., 2000 acyl-CoA reductase (13), wax synthase (14) Note. The numbers after the names of engineered reactions refer to Fig. 1A and 1B. Reactions 1 to 6 occur in the plastid and reactions 7 to 14 occur at the ER or other nonplastidial membrane. cases such engineering efforts have been successful (sum-marized in Table 1). In the following we discuss selected examples of the engineering of novel fatty acids in plants. Engineering of Fatty Acid Chain Length Plants that accumulate short- to medium-chain (C8 to C14) fatty acids in seed triacylglycerol have seed-specific acyl-ACP thioesterase activities toward the corresponding acyl-ACPs (Pollard et al., 1991; Davies, 1993). For example, California bay and Cuphea seeds accumulate up to 90% short chain saturated fatty acids in triacylglycerol. In groundbreaking studies, expression of a California bay thioesterase in the seeds of non-laurate (12:0)-accumu-lating plants, Arabidopsis and Brassica napus (rapeseed), resulted in the ‘‘short-circuiting’’ of acyl chain elongation to produce laurate up to 24 and 58% of total seed fatty acids, respectively (Table 1; Voelker et al., 1992, 1996). Position analysis of TAG revealed that laurate was present at both sn-1 and sn-3 positions but not the sn-2 position. Lack of laurate at the sn-2 position was attributed to the high specificity of lysophosphatidic acid acyltransferase 15 Fatty Acid Biosynthesis
  • 5. (LPAAT). Further increases in laurate yield seemed pos-sible if all three positions of TAG were acylated with laurate. The introduction of a laurate-specific coconut LPAAT into rapeseed containing the California bay thioesterase resulted in further increases in laurate levels, up to 67% total fatty acid, by catalyzing laurate acylation at the sn-2 position of TAG (Knutzon et al., 1999). This level of laurate is higher than observed in palm kernel, a commercial source of laurate. Applications of high-laurate rapeseed oil include detergents and soaps, a large market that is currently met by imported palm kernel and coconut oils. The previous example demonstrates that the transfer of a single gene into rapeseed confers laurate accumulation at levels very similar to California bay seed. However, such success with a single gene may be the exception rather than the rule. For example, when a medium-chain thio-esterase from Cuphea hookeriana was introduced into rapeseed, caprylate (8:0) accumulated to only 12% in transgenic rapeseed, while Cuphea contains 50% caprylate (Dehesh et al., 1996). In another investigation, expression of elm or nutmeg FatB thioesterases in rapeseed did not result in seed containing 65% caprate (10:0) or 80% laurate as observed in these two respective plants but rather 4% caprate and 20% laurate, respectively (Voelker et al., 1997). In these examples short-chain fatty acids were significantly lower in transgenic hosts compared to donor species. One explanation for these differences is the low availability of short-chain acyl-ACP pools for thioesterase termination in non-short-chain-accumulating plants. This was addressed by crossing plants expressing condensing enzymes (3-ketoacyl-ACP synthase, KAS) from Cuphea that have unique specificity for 6:0-(caproic) and 8:0-acyl- ACPs with lines carrying Cuphea FatB thioesterases (Leonard et al., 1998; Dehesh et al., 1998). All lines carry-ing both a Cuphea KAS and a Cuphea thioesterase had higher levels of short-chain fatty acids than the single-transgene parents. Enhancement of short-chain fatty acid accumulation was attributed to the short-chain specificity of the Cuphea KAS, effectively increasing 10:0- and 12:0- acyl-ACP pool sizes for short-chain thioesterase cleavage. Thus obtaining significant amounts of short-chain fatty acids in TAG may require multiple genes which increase the substrate pools for the thioesterase as well as short-chain- specific acyltransferases which can assemble the novel fatty acids into TAG. Plants Sometimes Fight Back against Metabolic Engineering Schemes An unexpected lesson learned from the study of laurate-producing transgenic plants described above was that high-level production of novel fatty acids can induce a futile cycle of fatty acid synthesis and degradation (Fig. 2). By analyzing hundreds of independent transgenic lines, Voelker et al., (1996) found that laurate production in canola seeds increased linearly up to about 35 mol% with increased lauroyl-ACP thioesterase expression. However, to achieve 58 mol% laurate required 10-fold higher levels of the introduced enzyme, raising the question of what limits higher laurate accumulation. Eccleston and Ohlrogge (1998) examined these high-laurate canola seeds and found that enzymes for medium-chain fatty acid b-oxidation were increased severalfold, as were malate dehydrogenase and isocitrate lyase, which participate in the glyoxylate cycle for fatty acid carbon reutilization. These and other results led to the conclusion that high production of unusual fatty acids in transgenic hosts can induce pathways for their breakdown. Surprisingly, seed oil yield was not reduced, which led to the additional discovery that the FAS pathway was also induced, presumably to compensate for the loss by oxidation of medium-chain fatty acids. Production of Waxes Long-chain wax esters were once harvested from sperm whales and were a major ingredient of industrial lubri-cants and transmission fluids. Banning of whale harvests led to searches for alternative biological sources of such structures. Jojoba, a desert shrub found in the American southwest, is the only plant species known to accumulate waxes (up to 60% dry weight) rather than TAG as a seed FIG. 2. Scheme for a futile cycle of production and oxidation of lauric acid in transgenic canola, based on results of Eccleston and Ohlrogge (1998). Transgenic seeds that produce 58 mol% lauric acid were found to have increased activity of lauric acid b-oxidation, isocitrate lyase, and malate dehydrogenase. In addition, up to 50% of [14C]acetate added to seeds was recovered in malate, sucrose, and other water-soluble metabolites. These results suggest that up to half the lauric acid produced is degraded and returned to intermediate pools in a futile cycle of fatty acid synthesis and turnover. Metabolic Engineering 4, 12–21 (2002) doi:10.1006/mben.2001.0204 16 Thelen and Ohlrogge
  • 6. storage reserve. These waxes are mostly derived from C20–C24 monounsaturated fatty acids and alcohols and are synthesized by the elongation of oleate followed by reduction to alcohols by a fatty acid reductase (Metz et al., 2000). The wax storage lipid is formed by a fatty acyl- CoA:fatty alcohol acyltransferase, also referred to as wax synthase. The reductase and acyltransferase were purified from jojoba and the corresponding cDNAs cloned (Metz et al., 2000; Lardizabal et al., 2000). Coordinated expression of three genes—a Lunaria annua long-chain acyl-CoA elongase and the jojoba reductase and acyltransferase—in Arabidopsis resulted in wax production at up to 70% of the oil present in mature seeds (Lardizabal et al., 2000). The high levels of accumulation indicated that all the genes necessary for this trait were identified. If this trait can be successfully transferred to commercial crops this would represent a large potential source of waxes for a variety of applications, including cosmetics and industrial lubricants. Production of Novel Monoenoic Fatty Acids Introduction of the first double bond in fatty acids occurs in plastids by a soluble desaturase specific for acyl-ACP substrates. The location of this double bond can vary depending upon specificity of the plastidial acyl-ACP desa-turase. Typically the double bond is inserted between carbons 9 and 10 of a stearoyl-ACP substrate. However, seed-specific plastidial acyl-ACP desaturases that intro-duce double bonds at the D4, D6, or D9 position of palmitoyl-ACP have been identified from coriander, black-eyed Susan vine (Thunbergia alata), and cat’s claw, respectively, which accumulate these unusual monoenes up to 80% in seed oil (Cahoon et al., 1992, 1994a, 1998). Double-bond position on palmitate and stearate alters the physical properties such that unusual monoenes have potentially different commercial uses including monomer feedstocks for specific nylon polymer applications or as higher melting unsaturated fatty acids for margarines. Since monomers for most nylons are derived from the petrochemical industry there is interest in plants as renewable sources for these precursors. To achieve wide use of such fatty acids it will be essential to move the unusual monoene trait into high-yielding oilseed crops from which the oil can be produced at low cost. However, intro-duction of a coriander D4 16:0-ACP desaturase or a Thunbergia D6 16:0-ACP desaturase into tobacco callus and Arabidopsis seed, respectively, resulted in less than 10% accumulation of these unusual fatty acids (Cahoon et al., 1992; Schultz and Ohlrogge, 2001). The reason for the low levels of unusual monoene production in non-native plants remains unknown and represents a major challenge Metabolic Engineering 4, 12–21 (2002) doi:10.1006/mben.2001.0204 in our understanding of plant lipid synthesis. Some evidence suggests specific isoforms of the cofactors, ferredoxin and ACP, may be important for production of unusual monoenes (Suh et al., 1999; Schultz et al., 2000). In addition, coriander and Thunbergia unusual monoenes are incor-porated into phosphatidylcholine pools prior to accu-mulation into TAG (Cahoon et al., 1994b; Schultz and Ohlrogge, 2000). Coriander also expresses KAS (Mekhedov et al., 2001), thioesterase (Dörmann et al., 1994), and acyltransferase (Dutta et al., 1992) activities specific for these unusual fatty acids, which are likely important for their accumulation in TAG. In a recent investigation, transgenic expression of an engineered castor D9 18:0-ACP desaturase (with improved specificity toward 16:0-ACP) in Arabidopsis seed resulted in 13% of total seed fatty acids as 16:1D9 and elonga-tion products 18:1D11 and 20:1D13 (Cahoon and Shanklin, 2000). Expression of this same desaturase in fab1 Arabi-dopsis mutants containing a lesion in KAS II, which cata-lyzes the elongation of 16:0-ACP to 18:0-ACP, resulted in up to 30% accumulation of the same three fatty acids. Thus availability of 16:0 ACP substrate is likely one limi-tation for unusual monoene production. In addition, this study suggests that novel acyl-ACP desaturases produced by protein engineering strategies may be more effective than enzymes derived from wild species. Product Yield: The New Challenge in Oilseed Metabolic Engineering Identification of key genes as described earlier and their transfer into transgenic crops have occupied many aca-demic and industrial laboratories for the past 10–15 years. However, in many cases this is not the central problem in oilseed modification. For a new oil to be economic, the desired fatty acid almost always must be the major constituent to avoid expensive purification costs. Despite impressive successes with medium-chain fatty acids and wax esters, in most cases in which a newly identified gene has been transferred into another oilseed, the proportion of the desired product in the transgenic host has been considerably lower than in the wild species from which the gene was obtained. The activity of the introduced enzyme has generally not been limiting, so it is necessary to determine what other factors limit product accumulation. Accumulation of unusual fatty acids to levels found naturally will likely require introduction of activities in addition to those directly responsible for synthesizing the unusual fatty acid. One possible explanation for this is the presence of a redundant set of biosynthetic enzymes for novel fatty acids in seeds. Such a scenario would explain 17 Fatty Acid Biosynthesis
  • 7. differences in substrate specificity between seed-specific lipid biosynthetic enzymes and those involved in general cell lipid synthesis. Presumably this is because most unusual fatty acids possess physical properties distinctly different from fatty acids commonly found in membranes, and thus plants must possess ‘‘editing’’ or exclusion mechanisms to prevent the accumulation of these fatty acids in lipid bilayers (reviewed in Volker and Kinney, 2001). Addressing these issues will require more knowl-edge of the cellular biochemistry in oil-accumulating tissues than is currently available. PROGRESS TOWARD INCREASING SEED OIL CONTENT For both edible and industrial uses, an increase in seed oil content is desirable and has been a major goal of oilseed engineering. However, to be economically useful, such a change must not come at the expense of overall seed yield or at the loss of other high-value components. For example, soybean is the largest source of vegetable oil, comprising 30% of the world market, and now consti-tutes over 80% of all dietary vegetable oils in the United States. Although termed an oilseed, soybean contains only 18–22% oil on a seed dry-weight basis and is grown prin-cipally as a high-protein meal for animal feeds. Thus, increasing oil in soybean will in most cases not be useful if it comes at the expense of high-value soy protein that drives the crop’s economics. By comparison, other oilseed crops (except cotton) are grown primarily for their oil and produce seeds with 40–60% oil. The wide range of seed oil percentage observed in nature suggests that this pathway might be amenable to metabolic engineering, particularly in ‘‘low-oil’’ oilseeds, provided the key mechanisms which control oil content are identified. Production of Malonyl-CoA by Acetyl-CoA Carboxylase Is a Key Regulatory Step The committed step for de novo FAS is the production of malonyl-CoA catalyzed by acetyl-CoA carboxylase (ACCase) (Fig. 1). Malonyl-CoA production appears to be a potential control point for this pathway, based upon analysis of acyl-CoA and acyl-ACP pool sizes (Post- Beittenmiller et al., 1991, 1992; Roughan, 1997). Since malonyl-CoA levels in plastids are very low (less than 10%) compared to acetyl-CoA, it seemed likely that up-regulating ACCase activity would increase flux to fatty acids. This has been clearly shown to be the case in Escherichia coli (Davis et al., 2000). The plastidial ACCase from most plants is a complex comprising four different subunits. One early effort to increase ACCase was to overexpress the biotin carboxylase (BC) subunit using a CaMV 35S promoter in tobacco. Although BC protein increased threefold in leaves, there was no accompanying increase in the amount of other ACCase subunits (Shintani et al., 1997) and no effect on fatty acid content or composition. Thus, for ACCase—unlike some other multi-enzyme complexes—overexpressing just one subunit does not increase the amount of the remaining subunits. Evidence that increased malonyl-CoA pools could increase fatty acid production was obtained by targeting a homomeric ACCase to rapeseed plastids (Roesler et al., 1997). Under the control of a seed-specific promoter this chimeric protein resulted in higher ACCase activities and increased oil yield by 3–5% on a seed dry-weight basis. These data provided the first evidence that seed oil could be quantitatively enhanced by increasing the pool size of malonyl-CoA precursor. However, the small increase pointed toward additional control points for FAS. Overexpression of Several Individual Fatty Acid Synthase Enzymes Does Not Increase Flux through Fatty Acid Biosynthesis Increasing malonyl-CoA precursor pools for FAS resulted in only slight increases in seed oil yield. Such a modest improvement would suggest that another step(s) might be limiting. Could fatty acid synthase activities also be limiting FAS? Several labs have addressed this question by overexpressing enzymes downstream of malonyl-CoA production. The conclusion from these investigations is that up-regulation of any one enzyme does not increase flux through FAS. Indeed, overexpression of some activi-ties actually decreased FAS and fatty acid content as observed with the overexpression of a condensing enzyme. Condensation of acetyl-CoA with malonyl-ACP is catalyzed by KAS III. Recently, a spinach KAS III was expressed in tobacco and resulted in approximately 50-fold increases in activity above control levels. Rather than an increase in fatty acid content a 5–10% decrease was observed (Dehesh et al., 2001). In the same report, a Cuphea KAS III expressed in rapeseed seed embryos resulted in a 9% decrease in fatty acid content. An interesting and unexpected consequence of KAS III overexpression was an increase in ACP protein levels in tobacco leaves, although other fatty acid synthase activi-ties were unaffected. Decreases in fatty acid content as a result of KAS III overexpression were attributed to decreased rates of de novo FAS most likely by reducing malonyl-CoA pools for subsequent KAS condensation reactions. In a related study, targeting of an E. coli malonyl-CoA:ACP trans-acylase to rapeseed leucoplasts Metabolic Engineering 4, 12–21 (2002) doi:10.1006/mben.2001.0204 18 Thelen and Ohlrogge
  • 8. increased this plastid activity up to 45-fold but did not increase fatty acid content (Verwoert et al., 1994). Based upon the aforementioned and other studies it seems unlikely that the up-regulation of any single fatty acid synthase enzyme will have a major positive effect on FAS flux. Although not all fatty acid synthase enzymes have been overexpressed to determine the effect on FAS, substantial increases in flux will likely require up-regula-tion of multiple activities. This conclusion has stimulated more comprehensive efforts to identify transcriptional, protein kinase, or other regulatory factors that might up-regulate the entire pathway (Girke et al., 2000). Preliminary studies suggest that reactions late in the TAG biosynthetic pathway may provide increased sink strength that could stimulate increased fatty acid produc-tion. Overexpression of a yeast long-chain sn-2 acyltrans-ferase resulted in > 50% (dry mass/seed) increases in seed oil content of Arabidopsis and rapeseed (Zou et al., 1997). Field trials of the transgenic rapeseed gave increases of 8.1–13.5% (Katavic et al., 2000). Recently, Jako et al. (2001) reported that overexpression of an Arabidopsis diacylglycerol acyltransferase in Arabidopsis seeds can also increase seed oil content as well as seed weight. Together, these studies suggest that increased flux into oil may be more easily achieved by strategies targeted at the later steps in the pathway. It is important to note that despite intense efforts in this area, commercial varieties with con-sistently increased oil yield per hectare have not been achieved through transgenic means. CONCLUSIONS Engineering of FAS has progressed rapidly in the past 5 years and has led to the commercialization or field trial of several modified oilseed crops. Although the engineering of fatty acid chain length and degree and location of fatty acid desaturation has at least been demonstrated in prin-ciple, engineering plants with increased flux through FAS has been difficult. This is likely due to the complexity associated with the engineering of primary carbon meta-bolism and an unclear picture of how this pathway is regulated in vivo. One of the challenges that lie ahead is to understand the mechanism for feedback inhibition of fatty acid production in vivo (Shintani and Ohlrogge, 1995). Although plants with increased seed oil and those con-taining nutritional supplements may have an immediate market niche, plants engineered to accumulate industrial ‘‘specialty oils’’ may encounter problems and will need to be cost-evaluated on an individual basis (Hitz, 1999). 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