The document discusses research being conducted on the Hyla andersonii frog species. Samples were taken from populations in three states and genetic analysis was performed to measure allelic variation and test hypotheses about population fragmentation or migration. Various genetic markers and primers were tested through polymerase chain reaction and gel electrophoresis, with some primers producing clearer bands than others. The research is being advised by Drs. Camper and Zwiers and funded by the REAL Program at FMU, with collaboration from USC-Columbia to further analyze gene sequences.
9. DNA Analysis
Polymerase
Chain Reaction (PCR)
Gel Electrophoresis
10. Mitochondrial
Genes used in past
Results from mitochondrial genes
inconclusive
Additional Information needed
11. Test
new primers
Amplify new gene regions
Run gel electrophoresis
Temperature
tRNApheL/tRNAvalH
16Sh/12L1
12Sm/16Sa
16Sc/16Sd
MVZ15-L/CytbAR-H
MVZ25-L/CytbAR-H
42
44
46
48
50
52
55
12. Presence
of bands
Length of bands
Temperature
42
44
46
48
50
52
55
tRNApheL/tRNAvalH
x
x
x
x
x
x
x
16Sh/12L1
x
x
x
x
x
x
x
12Sm/16Sa
x
x
x
x
x
x
x
16Sc/16Sd
x
x
x
x
x
x
x
MVZ15-L/CytbAR-H
o
o
x
√
o
o
o
MVZ25-L/CytbAR-H
x
x
x
x
x
x
x
14. Advisors
Dr. Jeff Camper, PhD
Dr. Paul Zwiers, PhD
Funding
REAL Program at FMU
Collaborators
Dr. Joseph Quattro, PhD, USC-Columbia
Mark Roberts, USC- Columbia
Dr. Pearl Fernandes, PhD, USC-Sumter
Editor's Notes
3 isolated populations
Using samples from each of the 3 locationsGenetic information used to describe allelic variation in each of the isolated populationsGenetic signal follows hypothesis 1 or 2
Previous work done by Anderson et. Al. 20042 mitochondrial gene regions which totalled approximately 900 base pairs of mitochondrial data in their analysis344 base pairs from Cytb535 bp from 16sBoth from mitochondrial lociFound considerable variation combined within north and south carolina populations but relatively little variation in NJ and FL populations. With so little data, there is not enough information to tell if the genetic signal was a true phylogenetic signal or a bias of the dataResults inconclusive because not enough information available Using additional genetic information from mitochondrial and nuclear gene regions
3 stages of PCR Denaturation – dna molecule separates annealing stage- primers will anneal to the appropriate sequence elongation stage- taq polymerase builds the complementary strandUltimately amplifies the gene region of interestUse gel electrophoresis to see whether PCR was successful and whether the appropriate region was amplified based on fragment length