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CHEMISTRYCHEMISTRY
Composition of Matter
 Matter - Everything in
universe is composed of
matter
 Matter is anything that
occupies space or has
mass
 Mass – quantity of
matter an object has
 Weight – pull of
gravity on an object
ElementsElements
 Pure substances that cannot be broken
down chemically into simpler kinds of
matter
 More than 100 elements (92 naturally
occurring)
 90% of the mass of an
organism is composed of 4
elements (oxygen, carbon,
hydrogen and nitrogen)
 Each element unique
chemical symbol
 Consists of 1-2 letters
 First letter is always
capitalized
AtomsAtoms
 The simplest particle of
an element that retains
all the properties of that
element
 Properties of atoms
determine the structure
and properties of the
matter they compose
 Our understanding of the
structure of atoms based
on scientific models, not
observation
The NucleusThe Nucleus
 Central core
 Consists of positive
charged protons
and neutral
neutrons
 Positively charged
 Contains most of
the mass of the
atom
The ProtonsThe Protons
 All atoms of a given element have the
same number of protons
 Number of protons called the atomic
number
 Number of protons balanced by an equal
number of negatively charged electrons
The NeutronsThe Neutrons
 The number varies slightly among atoms
of the same element
 Different number of neutrons produces
isotopes of the same element
Atomic Mass
 Protons & neutrons are found in the
nucleus of an atom
 Protons and neutrons each have a
mass of 1 amu (atomic mass unit)
 The atomic mass of an atom is found
by adding the number of protons &
neutrons in an atom
The ElectronsThe Electrons
 Negatively charged high energy particles
with little or no mass
 Travel at very high speeds at various
distances (energy levels) from the
nucleus
 Electrons in the same energy level are
approximately the same distance from
the nucleus
 Outer energy levels have more energy
than inner levels
 Each level holds only a certain number of
electrons
Energy LevelsEnergy Levels
 Atoms have 7 energy levels
 The levels are K (closest to the
nucleus), L, M, N, O, P, Q
(furthest from the nucleus)
 The K level can only hold 2
electrons
 Levels L – Q can hold 8 electrons
(octet rule)
Periodic TablePeriodic Table
 Elements are arranged by their
atomic number on the Periodic Table
 The horizontal rows are called
Periods & tell the number of
energy levels
 Vertical groups are called Families &
tell the outermost number of
electrons
CompoundsCompounds
 Most
elements do
not exist by
themselves
 Readily
combine with
other
elements in
a
predictable
fashion
 A compound is a pure
substance made up of
atoms of two or more
elements
 The proportion of
atoms are always
fixed
 Chemical formula shows
the kind and proportion
of atoms of each
element that occurs in a
particular compound
 Molecules are the
simplest part of a
substance that
retains all of the
properties of the
substance and
exists in a free
state
 Some molecules are
large and complex
Chemical FormulasChemical Formulas
 Subscript after a symbol tell the
number of atoms of each element
 H20 has 2 atoms of hydrogen & 1
atom of oxygen
 Coefficients before a formula tell
the number of molecules
 3O2 represents 3 molecules of oxygen
or (3x2) or 6 atoms of oxygen
 The physical and
chemical
properties of a
compound differ
from the
physical and
chemical
properties of
the individual
elements that
compose it
 The tendency of
elements to combine and
form compounds depends
on the number and
arrangement of
electrons in their
outermost energy level
 Atoms are most stable
when their outer most
energy level is filled
 Most atoms are not stable in
their natural state
 Tend to react (combine) with
other atoms in order to
become more stable (undergo
chemical reactions)
 In chemical reactions bonds
are broken; atoms
rearranged and new chemical
bonds are formed that store
energy
Covalent Bonds
 Formed when two atoms share one or
more pairs of electrons
Ionic Bonds
 Some atoms become stable by losing or
gaining electrons
 Atoms that lose electrons are called
positive ions
 Atoms that gain electrons are called
negative ions
 Because positive and negative electrical
charges attract each other ionic bonds
form
Energy and MatterEnergy and Matter
 Energy
 The ability to do work or cause
change
 Occurs in various forms
 Can be converted to another form
 Forms important to biological
systems are chemical, thermal,
electrical and mechanical energy
 Free energy is the energy in a
system that is available for work
States of MatterStates of Matter
 Atoms are in constant motion
 The rate at which atoms or molecules in
a substance move determines its state
 Solid
 Molecules tightly linked together in
a definite shape
 Vibrate in place
 Fixed volume and shape
 Liquids
 Molecules not as tightly linked
as a solid
 Maintain fixed volume
 Able to flow and conform to
shape of container
Gas
Molecules have little
or no attraction to each
other
Fill the volume of the
occupied container
Move most rapidly
 To cause a substance to
change state, thermal energy
(heat) must be added to or
removed from a substance
Energy and Chemical Reactions
 Living things
undergo
thousands of
chemical
reactions as part
of the life
process
 Many are very complex
involving multistep sequences
called biochemical pathways
 Chemical equations represent
chemical reactions
 Reactants are shown on the
left side of the equation
 Products are shown on the
right side
 The number of
each kind of atom
must be the same
on either side of
the arrow (equation
must be balanced)
 Bonds may be
broken or made
forming new
compounds
Energy TransferEnergy Transfer
 Much of the energy
organisms need is
provided by sugar (food)
 Undergoes a series of
chemical reactions in
which energy is released
(cell respiration)
 The net release of free
energy is called an
exergonic (exothermic)
reaction
 Reactions that involve a
net absorption of free
energy are called
endergonic (endothermic)
reactions
 Photosynthesis is an
example
 Most reactions in living
organisms are endergonic;
therefore living organisms
require a constant source
of energy
 Most chemical reactions require energy
to begin
 The amount of energy needed to start
the reaction is called activation energy
 Certain chemical
substances
(catalysts)
reduce the
amount of
activation energy
required
 Biological
catalysts are
called enzymes
 Enzymes are an important class of
catalysts in living organisms
 Mostly protein
 Thousands of different kinds
 Each specific for a different chemical
reaction
Enzyme Structure
 Enzymes work on
substances called
substrates
 Substrates must fit into
a place on an enzyme
called the active site
 Enzymes are reusable!
Reduction-Oxidation Reactions
 Many of the chemical reactions that
help transfer energy in living organisms
involve the transfer of electrons
(reduction-oxidation = redox reactions)
 Oxidation reaction – reactant loses
electron(s) becoming more positive
 Reduction reaction – reactant gains
electron(s) becoming more negative
Solutions
SolutionsSolutions
 A solution is a
mixture in
which 2 or
more
substances are
uniformly
distributed in
another
substance
 Solute is the
substance dissolved
in the solution
 Particles may be
ions, atoms, or
molecules
 Solvent is the
substance in which
the solute is
dissolved
 Water is the
universal solvent
 Solutions can be composed of
varying proportions of a given
solute in a given solvent ---
vary in concentration
(measurement of the amount of
solute)
 A saturated solution is one in
which no more solute can be
dissolved
 Aqueous solution (water) are
universally important to living
things
 Dissociation of water
 Breaking apart of the water
molecule into two ions of
opposite charge (due to
strong attraction of oxygen
atom of one molecule for H
atom of another water
molecule)
 H2O  H+
(hydrogen ion) +
OH-
(hydroxide ion)
 H+
+ H2O  H3O
(hydronium ion)
Acids and BasesAcids and Bases
 One of the most important aspects of a
living system is the degree of acidity or
alkalinity
AcidsAcids
 Number of hydronium ions in solutions is
greater than the number of hydroxide
ions
 HCl  H+
+ Cl-
BasesBases
 Number of hydroxide ions in solution is
greater than the number of hydronium
ions
 NaOH  Na+
+ OH-
pH ScalepH Scale
 logarithmic
scale for
comparing the
relative
concentrations
of hydronium
ions and
hydroxide ions
in a solution
 ranges from 0
to 14
 Each pH is 10X
stronger than next
 e.g. ph 1 is 10 times
stronger than ph 2
 the lower the pH the stronger the acid
 the higher the pH the stronger the base
 pH 7.0 is neutral
BuffersBuffers
 Control of pH is very
important
 Most enzymes function
only within a very
narrow pH
 Control is accomplished
with buffers made by
the body
 Buffers keep a neutral
pH (pH 7)
 Buffers neutralize
small amounts of either
an acid or base added
to a solution
 Complex buffering
systems maintain the
pH values of your
body’s many fluids at
normal and safe levels
Essentials of Chemistry

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Essentials of Chemistry

  • 2. Composition of Matter  Matter - Everything in universe is composed of matter  Matter is anything that occupies space or has mass  Mass – quantity of matter an object has  Weight – pull of gravity on an object
  • 3. ElementsElements  Pure substances that cannot be broken down chemically into simpler kinds of matter  More than 100 elements (92 naturally occurring)
  • 4.  90% of the mass of an organism is composed of 4 elements (oxygen, carbon, hydrogen and nitrogen)  Each element unique chemical symbol  Consists of 1-2 letters  First letter is always capitalized
  • 5. AtomsAtoms  The simplest particle of an element that retains all the properties of that element  Properties of atoms determine the structure and properties of the matter they compose  Our understanding of the structure of atoms based on scientific models, not observation
  • 6. The NucleusThe Nucleus  Central core  Consists of positive charged protons and neutral neutrons  Positively charged  Contains most of the mass of the atom
  • 7. The ProtonsThe Protons  All atoms of a given element have the same number of protons  Number of protons called the atomic number  Number of protons balanced by an equal number of negatively charged electrons
  • 8. The NeutronsThe Neutrons  The number varies slightly among atoms of the same element  Different number of neutrons produces isotopes of the same element
  • 9. Atomic Mass  Protons & neutrons are found in the nucleus of an atom  Protons and neutrons each have a mass of 1 amu (atomic mass unit)  The atomic mass of an atom is found by adding the number of protons & neutrons in an atom
  • 10. The ElectronsThe Electrons  Negatively charged high energy particles with little or no mass  Travel at very high speeds at various distances (energy levels) from the nucleus
  • 11.  Electrons in the same energy level are approximately the same distance from the nucleus  Outer energy levels have more energy than inner levels  Each level holds only a certain number of electrons
  • 12. Energy LevelsEnergy Levels  Atoms have 7 energy levels  The levels are K (closest to the nucleus), L, M, N, O, P, Q (furthest from the nucleus)  The K level can only hold 2 electrons  Levels L – Q can hold 8 electrons (octet rule)
  • 13. Periodic TablePeriodic Table  Elements are arranged by their atomic number on the Periodic Table  The horizontal rows are called Periods & tell the number of energy levels  Vertical groups are called Families & tell the outermost number of electrons
  • 14.
  • 15. CompoundsCompounds  Most elements do not exist by themselves  Readily combine with other elements in a predictable fashion
  • 16.  A compound is a pure substance made up of atoms of two or more elements  The proportion of atoms are always fixed  Chemical formula shows the kind and proportion of atoms of each element that occurs in a particular compound
  • 17.  Molecules are the simplest part of a substance that retains all of the properties of the substance and exists in a free state  Some molecules are large and complex
  • 18. Chemical FormulasChemical Formulas  Subscript after a symbol tell the number of atoms of each element  H20 has 2 atoms of hydrogen & 1 atom of oxygen  Coefficients before a formula tell the number of molecules  3O2 represents 3 molecules of oxygen or (3x2) or 6 atoms of oxygen
  • 19.  The physical and chemical properties of a compound differ from the physical and chemical properties of the individual elements that compose it
  • 20.  The tendency of elements to combine and form compounds depends on the number and arrangement of electrons in their outermost energy level  Atoms are most stable when their outer most energy level is filled
  • 21.  Most atoms are not stable in their natural state  Tend to react (combine) with other atoms in order to become more stable (undergo chemical reactions)  In chemical reactions bonds are broken; atoms rearranged and new chemical bonds are formed that store energy
  • 22. Covalent Bonds  Formed when two atoms share one or more pairs of electrons
  • 23. Ionic Bonds  Some atoms become stable by losing or gaining electrons  Atoms that lose electrons are called positive ions
  • 24.  Atoms that gain electrons are called negative ions  Because positive and negative electrical charges attract each other ionic bonds form
  • 25. Energy and MatterEnergy and Matter  Energy  The ability to do work or cause change  Occurs in various forms  Can be converted to another form  Forms important to biological systems are chemical, thermal, electrical and mechanical energy  Free energy is the energy in a system that is available for work
  • 26. States of MatterStates of Matter  Atoms are in constant motion  The rate at which atoms or molecules in a substance move determines its state
  • 27.  Solid  Molecules tightly linked together in a definite shape  Vibrate in place  Fixed volume and shape
  • 28.  Liquids  Molecules not as tightly linked as a solid  Maintain fixed volume  Able to flow and conform to shape of container
  • 29. Gas Molecules have little or no attraction to each other Fill the volume of the occupied container Move most rapidly  To cause a substance to change state, thermal energy (heat) must be added to or removed from a substance
  • 30. Energy and Chemical Reactions  Living things undergo thousands of chemical reactions as part of the life process
  • 31.  Many are very complex involving multistep sequences called biochemical pathways  Chemical equations represent chemical reactions  Reactants are shown on the left side of the equation  Products are shown on the right side
  • 32.  The number of each kind of atom must be the same on either side of the arrow (equation must be balanced)  Bonds may be broken or made forming new compounds
  • 33. Energy TransferEnergy Transfer  Much of the energy organisms need is provided by sugar (food)  Undergoes a series of chemical reactions in which energy is released (cell respiration)  The net release of free energy is called an exergonic (exothermic) reaction
  • 34.  Reactions that involve a net absorption of free energy are called endergonic (endothermic) reactions  Photosynthesis is an example  Most reactions in living organisms are endergonic; therefore living organisms require a constant source of energy
  • 35.  Most chemical reactions require energy to begin  The amount of energy needed to start the reaction is called activation energy
  • 36.  Certain chemical substances (catalysts) reduce the amount of activation energy required  Biological catalysts are called enzymes
  • 37.  Enzymes are an important class of catalysts in living organisms  Mostly protein  Thousands of different kinds  Each specific for a different chemical reaction
  • 38. Enzyme Structure  Enzymes work on substances called substrates  Substrates must fit into a place on an enzyme called the active site  Enzymes are reusable!
  • 39. Reduction-Oxidation Reactions  Many of the chemical reactions that help transfer energy in living organisms involve the transfer of electrons (reduction-oxidation = redox reactions)
  • 40.  Oxidation reaction – reactant loses electron(s) becoming more positive
  • 41.  Reduction reaction – reactant gains electron(s) becoming more negative
  • 43. SolutionsSolutions  A solution is a mixture in which 2 or more substances are uniformly distributed in another substance
  • 44.  Solute is the substance dissolved in the solution  Particles may be ions, atoms, or molecules  Solvent is the substance in which the solute is dissolved  Water is the universal solvent
  • 45.  Solutions can be composed of varying proportions of a given solute in a given solvent --- vary in concentration (measurement of the amount of solute)  A saturated solution is one in which no more solute can be dissolved  Aqueous solution (water) are universally important to living things
  • 46.  Dissociation of water  Breaking apart of the water molecule into two ions of opposite charge (due to strong attraction of oxygen atom of one molecule for H atom of another water molecule)  H2O  H+ (hydrogen ion) + OH- (hydroxide ion)  H+ + H2O  H3O (hydronium ion)
  • 47. Acids and BasesAcids and Bases  One of the most important aspects of a living system is the degree of acidity or alkalinity
  • 48. AcidsAcids  Number of hydronium ions in solutions is greater than the number of hydroxide ions  HCl  H+ + Cl-
  • 49. BasesBases  Number of hydroxide ions in solution is greater than the number of hydronium ions  NaOH  Na+ + OH-
  • 50. pH ScalepH Scale  logarithmic scale for comparing the relative concentrations of hydronium ions and hydroxide ions in a solution  ranges from 0 to 14  Each pH is 10X stronger than next  e.g. ph 1 is 10 times stronger than ph 2
  • 51.  the lower the pH the stronger the acid  the higher the pH the stronger the base  pH 7.0 is neutral
  • 52. BuffersBuffers  Control of pH is very important  Most enzymes function only within a very narrow pH  Control is accomplished with buffers made by the body  Buffers keep a neutral pH (pH 7)
  • 53.  Buffers neutralize small amounts of either an acid or base added to a solution  Complex buffering systems maintain the pH values of your body’s many fluids at normal and safe levels