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Fungal Diseases and toxins
1
Mycotoxins and Mycotoxicoses
• Mycotoxins are fungal secondary metabolites that are toxic
when consumed by animals and man.
• The disease resulted by consuming mycotoxins are called
mycotoxicoses.
• One mold species may produce many different mycotoxins,
and the same mycotoxin may be produced by several species
• Mycotoxins accumulate in maturing corn, cereals, soya beans,
sorghum, peanuts and other food and feed crops in the field
and in grain during transportation and storage.
2
• Mycotoxins can appear in the food chain as a result of fungal
infection of crops, either by being eaten directly by humans or
by being used as livestock feed.
• Mycotoxins greatly resist decomposition or being broken
down in digestion
– they remain in the food chain in meat and dairy products
– Even temperature treatments, such as cooking and freezing,
do not destroy some mycotoxins.
3
Types of Mycotoxins
1. Aflatoxins
• Produced by Aspergillus flavus and A. parasiticus
• The fungi are common in soils and involved in decay of plant
materials
• Invade grain under storage and in the field
• More serious in tropical and subtropical countries where
cereals, peanuts and corn are important source of diet
• Attack all species of animals
• Cause liver cancer in human
4
2. Ergot alkaloids
• Produced by Claviceps purpureae
• The alkaloids produced by the black sclerotium (ergot)
• The chronic ergot poisoning cause gangrene, cramps, vomiting
and fatal in sever cases
• The ergot fungus infects the flowers of cereals and many
grasses when flowering occurs during cool & moist weather
• It produces a characteristic black, spur like sclerotia that
replace the seed
• Sclerotia is the ergot body
5
• Ergot alkaloids is important from medical point of view:
– used for menstrual disorders
– intestinal bleeding
– decrease blood pressure
– contract smooth muscles (uterus)
6
3. Zearalenone
• Produced by Fusarium species
• Cause estrogenic syndrome which is characterized by swollen
edematous vulva with enlarged mammary glands
• In young males, cause shrinkage of the testis
7
4. Ochratoxin
• Produced by Aspergillus ochraceus and penicillium
viridicatum primarily
• Produced in food and feed grains
• Chiefly attacks poultry and swine
• Damages kidneys and liver
• Carcinogenic
8
5. T 2 Toxin
• Is a tricothecene produced by Fusarium
• Is one of the deadly known toxin
• Damage all digestive tract and cause rapid death due to
internal hemorrhage
9
6. Vomitoxin
• Produced by Fusarium
• Cause acute GIT illness
7. Sterigmatocystin
• Produced by A. versicolor
• Carcinogenic
10
Mycoses
11
• Fungal infections are called mycoses
• People are at risk of fungal infections:
– taking strong antibiotics for a long period of time
• because antibiotics kill not only damaging bacteria, but
healthy bacteria as well
• this alters the balance of microorganisms in the mouth,
vagina, intestines and other places in the body
• results in an overgrowth of fungus.
12
• Individual with weakened immune systems are also at risk of
developing fungal infections.
– people with HIV/AIDS
– people taking immunosuppressive therapy (chemotherapy)
– People with diabetes
• Very young and very old people, also, are groups at risk.
13
Types of mycoses
A. Superficial mycoses
• Disease limited to the outer most layers of the skin and hair
e.g. Malassegia furfur
• Dermatomycoses
14
B. Cutaneous mycoses
• extend deeper into the epidermis, and also include invasive
hair and nail diseases
• The organisms that cause these diseases are called
dermatophytes (Microsporum, Trichophyton, and
Epidermophyton fungi), which together comprise 41 species
• The resulting diseases are often called ringworm (even though
there is no worm involved) or tinea.
• One common disease is the athlete's foot which most
commonly affects men and children before puberty.
15
3. Subcutaneous mycoses
• Deeper layer of skin, sometimes even bone
• These infections are chronic and can be initiated by piercing
trauma to the skin which allows the fungi to enter.
• These infections are difficult to treat and may require surgical
interventions
16
4. Systemic mycoses
• Also called deep mycoses
• Affect internal organs disseminate to multiple sites of the body
• Caused by dimorphic fungi such as Cryptococcus Neoformans
• pathogens originate primarily in the lungs and may spread to
many organ systems
17
18
5. Opportunistic mycoses
• Opportunistic fungi do not cause disease under normal
condition.
• They cause disease under special conditions such as:
– in immunologically compromised individuals such as
• AIDS patients
• extensive antibiotic users
• mmunosuppressive drugs
19
Examples of opportunistic mycoses
A. Candidiasis
• Are acute to chronic fungal infections
• Involve mouth, vagina, skin, nails, bronchi (lung), alimentary
tract, blood stream, UTI.
• Risk factors include:
– Age
– Pregnancy
– Diabetes
– AIDS
– long term antibiotic use.
– Burns
– Drug abuse
– Gastrointestinal damage
20
• Candida albicans
– is part of normal flora of skin, vagina, mucous membrane,
and GIT.
– Cause:
• oral trash:cause white curd like patches in the mouth
• Vulvovaginitis: thick yellow white discharge, burning
serration
• Cutaneous candidiasis: involves nails
• GIT, blood infection, bronchopulmonary infection etc.
21
B. Cryptocococcuses
• Most often cause meningitis and pulmonary infections
e.g. C. neoformans
C. Aspergilloses
• Caused by A. fumigatus and A. flavus
• Cause:
– allergic bronchopulmonary diseases
– Aspergillus pneumonitis
– Keratitis
– otomycosis (ear external infection)
– Aspergillus asthma etc.
22
D. Pneumocystis carni pneumonia
• Caused by P. carinii
• Is the major cause of morbidity and mortality in immune
compromised people
E. Zygomycosis(Mucor mycosis, phycomycosis)
• Caused by Rhizopus and mucor
• Growth of cotton like growths (fungal colonies) on the roof of
mouth or naves in diabetic patients
23
F. Fusarium
• Some times cause diseases in HIV/AIDS patients.
• It infects nails
G. Penicillum
• Sometimes cause keratitis, penicilliosis, otomycosis
24
Treatment
• Antifungal drugs are used to treat mycoses.
• Depending on the nature of the infection, a topical or systemic
agent may be used.
• Photochemotherapy is a technique used at medical centers for
the treatment of mycosis
25
Prevention
• Keeping the skin clean and dry, as well as maintaining good
hygiene, will help larger topical mycoses.
• Because fungal infections are contagious, it is important to
wash after touching other people or animals.
• Sports clothing should also be washed after use.
26
Plant Diseases
• Plant diseases reduce the harvest of food worldwide by about
30% each year.
• 70% of plant (crop) diseases are caused by fungi
• Diseases can take many forms, and cause many different types
of symptoms in host plants.
• Ex: necrosis (death), wilts, loss of fruit, economic damage to
harvested crops
27
Fungi as plant parasites
• Necrotrophic parasites:
– are parasites which kill off the host cells & feed
• Biotrophic parasites:
– absorb nutrients from host cells without killing the cell
28
Seedling pathogens of fungi
• Pythium spp: attack the emerging root tip
• Rhizoclonia solani: attack the young shoot base
• Fusarium spp: seed rot of cereals
Fruit diseases
• Fleshy fruits are rotten by some fungi
• Botrytis cineria: cause grey mould of soft fruits such as straw
berry, grapes
• P. italicum cause citrus fruits to rot
• P. expansum cause the rotting of apple
Wood rots
• Armillaria spp: it rots the wood and kill trees such as coffee
29
Example of Plant Diseases
30
1.Tomato early blight (Alternaria solani)
• caused by a soil-borne fungus, can over winter in plant debris
on the ground.
• causes dark sunken lesions on mature fruit, concentric rings
of necrosis, fruit often falls from the plant before harvest.
• also causes defoliation of the host plant
31
2. Grey Mold (Botrytis cinerea)
• caused by a soil-borne fungus, easily invades new tissue on
many plants.
• requires high humidity, close proximity of other plants.
• attacks stems first, causes black slimy lesions, which cause the
plant to die.
• lesions on fruit cause economic loss.
Grey Mold of bean, (Botrytis cinerea)
Botrytis mold on raspberries and strawberries
32
3. Corn Smut (Ustilago zeae)
• overwinters in soil as spores, which can survive in soil for over
3 years.
• causes ears of corn to turn black, with a greasy appearance.
Large amounts of
• spores are produced within the infected ears.
• these spores can be blown on the wind to other plants.
Corn smut, Ustilago zeae 33
4. Potato Late Blight (Phytophthora infestans)
• one of the most devastating plant diseases, it is responsible for
the Irish Potato Famine of the 1800’s.
• caused by a fungus, it will defoliate an entire field of potatoes
in a few days.
• tubers are also infected, and cause the disease to be transmitted
over years.
Infected tuber
Defoliated Plant
34
5. Black Spot on Rose (Diplocarpon rosae)
• a fungal disease, it causes black spots to form on leaves. The
spots eventually cover the entire leaf, which then falls off. All
of the leaves will fall eventually.
• defoliation of the plant leaves it open to drought and insect
damage.
• damaged plants may not live next year.
Black Spot on Rose (Diplocarpon rosae)
35
6. Fire Blight of Apple and Peach (Erwinia amylovora)
• a bacterial disease, spread by rain, as well as by insect vector.
• infects through the flowers, in early spring.
• causes a distinctive “shepherds crook” on infected limbs.
Limbs appear burned and the entire tree will eventually die.
Peach Limbs With Fire blight Apple Limbs With Fire blight
36
Control of Plant Diseases
• There are a variety of methods for the control of plant disease.
A. Cultural control: the use of specific techniques or practices to
eliminate or mitigate the pathogen.
– disinfecting pruning equipment
– removal of dead plants and plant debris
– spacing of crops to allow drying
– crop rotation
37
B. Biological Control: using plants that are immune to the
pathogen, or are at least tolerant.
– Using biopesticides (beneficial bacteria)
• which outcompete some diseases (mostly Erwinia)
38
C. Chemical control: the use of some pesticide to kill either the
pathogen or its vector. This usually has to be done over the
course of a season, not just once.
– Spraying fields to kill off the late blight fungus
– spraying antibacterial chemicals on fire blighted trees
– injecting trees with insecticide and fungicide to kill the
fungus and the vector
39
Applied area of mycology
40
Fungal Biotechnology
• Biotechnology which can simply be defined as:
– application of living organisms and their components to
industrial products and processes
• Biotechnology also offers the potential for new industrial
processes that require less energy and are based on renewable
raw materials.
41
• Biotechnology encompasses two distinct phases: Fermentation
and Product recovery
• Fermentation procedures must be developed for the cultivation
of microorganisms under optimal conditions and for the
production of desired metabolites or enzymes by the
organisms.
• Product recovery involves the extraction and purification of
biological products
42
• Some of the most important organisms used in biotechnology
are fungi.
• Only a few examples of the products and processes involving :
– Food Applications
– important industrial products (chemicals, pharmaceuticals)
– Processes (degrade toxic wastes)
43
Food Applications
Brewing and baking
– conversion of sugar into alcohol and carbon dioxide by yeasts
• In bread making carbon dioxide causes the dough to rise
giving lightness to the bread whilst the alcohol is driven off
during baking.
• Early processes were dependent on contamination by 'wild'
yeasts.
• Today pure strains are normally employed of baker's yeast
(Saccharomyces cerevisiae) are produced worldwide every
year.
44
Cheese production
– Penicillium roqueforti
– Penicillium candidum
– Penicillium caseicolum
– Penicillium camemberti
• play an important role in the development of the characteristic
flavors of these cheeses.
45
Edible mushrooms
• Cultivation of edible mushrooms outdoors has been practiced
for thousands of years
• More consistent crops and much higher yields were obtained:
– following the development of pure spawns
– sterilization/pasteurization technology
– a better understanding of substrate requirements and
– the use of environmentally controlled mushroom houses
46
Quorn myco-protein /SCP
• A recent innovation in food technology has been the
– development of Quorn myco-protein
– from a filamentous fungus of Fusarium venenatum.
• The filamentous nature of the biomass is responsible for the
meat-like texture and appearance of the final product.
• single-cell protein, or SCP, describes the protein-rich cell mass
derived from microorganisms grown on a large scale for either
animal or human consumption.
• SCP has a high content of protein containing all the essential
amino acids
47
• Microorganisms are an excellent source of SCP because of:
– their rapid growth rate
– their ability to use very inexpensive raw materials as
carbon sources
– the uniquely high efficiency, expressed as grams of protein
produced per kilo gram of raw material
48
49
Useful Products
• important industrial products (chemicals, pharmaceuticals etc.)
– produced from fungi using fermentation technology
• Early fermentations used open processes under nonsterile
conditions but this changed in the 1940s
– with the introduction of the stirred-tank bioreactor for penicillin
manufacture
• which required the development of novel engineering techniques to exclude
contaminating microorganisms.
50
• An example of a major commodity chemical manufactured by
fungal fermentation is
– citric acid which is widely used in the food and pharmaceutical
industries.
– antibiotics
51
Other Processes
• Fungi can be used in new production processes that are
themselves less polluting than traditional chemical processes
• some species of white rot fungi are already being employed to
degrade toxic wastes/ Bioremedation
52
• Bioremediation depends on the activities of living organisms
to clean up pollutants dispersed in the environment.
• Physical or chemical treatments, such as vaporization,
extraction, or adsorption, relocate rather than remove
pollutants.
• In contrast, there are many instances in which biodegradation
converts organic pollutants to harmless inorganic products,
including carbon dioxide, water, and halide ions.
• Other advantages are that bioremediation is generally
inexpensive and causes little disturbance to the environment.
53
• Lignin-degrading (note: decay caused by these
species gives wood a bleached appearance)
– such as Phanerochaete chrysosporium and
Trametes versicolor
• replace some of the chemical steps used in
paper making.
54
• The use of fungi as biocontrol agents to kill:
– insects (mycoinsecticides)
– weeds (mycoherbicides)
• has the potential to replace many of the toxic chemicals
currently in use.
55
ANTIBIOTICS PRODUCED BY FUNGI
56
ANTIBIOTICS PRODUCED BY FUNGI
A. Penicillin
• First produced from P. notatum, currently produced from p.
chrysogenum in cultures for high yield
B. Cephalosporins
• Produced from moulds called Cephalosporium
• Cephalosporins breakdown bacterial cell wall
57
C. Cycloserine
• Inhibits bacterial cell wall synthesis
• Produced by Trichoderma polysporum
• It is immune suppressant
• Not used as fungicide
D. Gliotoxins
• Have immunological and antibiotic activity
• Produced by fungi such as A. fumigatus
58
E. Griseofulvin
• Produced by P. griseofulvin
• Is fungistatic
• Used for the treatment of dermatophytes applied topically
• Production industrially is simple and cheap
59
F. Statins
• Produced by A. griseus a soil born fungi
• It removes lipoproreins from blood vessels in humans
• It acts in the liver on an enzyme which makes cholesterol and
hence stop cholesterol formation
• It reduces the chance of heart attack and diabetes
60
Isolation of fungal antibiotics
61
Isolation of fungal antibiotics
• Three steps involved:
1. Culture
• the fungus expected to produce antibiotic has to be cultured in
the laboratory
2. Bioassay
• is a biological method of detection of a substance
– detects the effect of a given fungal product on living organism
62
3. Extraction
• isolation of the active substance (the antibiotic) from the fungi
• It involves:
– Screening
– identification of microbial products
• The process of isolation and purification of antibiotics is called
downstream process (product recovery)
63
DESIRED PRODUCT IN CULTURE BROTH
INTRACELLULAR
PRODUCT
EXTRACELLULAR
PRODUCT
CELL DISRUPTION (physical,
chemical, enzymatic methods)
BROTH WITH SOLID AND LIQUID
SOLID-LIQUID SEPARATION
(Flocculation, Flotation,
Filtration, Centrifugation)
CONCENTRATION
(Evaporation, membrane
filtration, precipitation,
adsorption)
FORMULATION
(Drying, freeze drying,
crystallization)
FINAL PRODUCT
Fig. A summary of the major steps in downstream processing 64
• Intracellular metabolites: these products are located within the
cells.
– Nucleic acids
– Vitamins
– Enzymes
– Certain antibiotics (e.g. Sisomicin and Griseofulvin)
65
• Extracellular metabolites: they are present outside the cells (in
culture fluides)
– Amino acids
– Citric acid
– Alcohol
– Some enzyme (amylase and proteases)
– Most antibiotics
• In a few cases, metabolites are found both in the cells and the
culture filtrates; e.g. Flavomycin, Vitamin B12
66
• Test Two
– Fungal reproduction
– Fungal association with other organisms
– Mycotoxin
• December 28/2015
67
• Assignment one (10%)
– Literature review report on
• Antifugal therapy
• Hallucinating mushrooms
• Evaluation of each review will be based on originality of the
review, relevance of the content and understanding of the
topics
• Group work- peer learning grouping
• January 1/2016
68

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Fungi Diseases.pptx

  • 2. Mycotoxins and Mycotoxicoses • Mycotoxins are fungal secondary metabolites that are toxic when consumed by animals and man. • The disease resulted by consuming mycotoxins are called mycotoxicoses. • One mold species may produce many different mycotoxins, and the same mycotoxin may be produced by several species • Mycotoxins accumulate in maturing corn, cereals, soya beans, sorghum, peanuts and other food and feed crops in the field and in grain during transportation and storage. 2
  • 3. • Mycotoxins can appear in the food chain as a result of fungal infection of crops, either by being eaten directly by humans or by being used as livestock feed. • Mycotoxins greatly resist decomposition or being broken down in digestion – they remain in the food chain in meat and dairy products – Even temperature treatments, such as cooking and freezing, do not destroy some mycotoxins. 3
  • 4. Types of Mycotoxins 1. Aflatoxins • Produced by Aspergillus flavus and A. parasiticus • The fungi are common in soils and involved in decay of plant materials • Invade grain under storage and in the field • More serious in tropical and subtropical countries where cereals, peanuts and corn are important source of diet • Attack all species of animals • Cause liver cancer in human 4
  • 5. 2. Ergot alkaloids • Produced by Claviceps purpureae • The alkaloids produced by the black sclerotium (ergot) • The chronic ergot poisoning cause gangrene, cramps, vomiting and fatal in sever cases • The ergot fungus infects the flowers of cereals and many grasses when flowering occurs during cool & moist weather • It produces a characteristic black, spur like sclerotia that replace the seed • Sclerotia is the ergot body 5
  • 6. • Ergot alkaloids is important from medical point of view: – used for menstrual disorders – intestinal bleeding – decrease blood pressure – contract smooth muscles (uterus) 6
  • 7. 3. Zearalenone • Produced by Fusarium species • Cause estrogenic syndrome which is characterized by swollen edematous vulva with enlarged mammary glands • In young males, cause shrinkage of the testis 7
  • 8. 4. Ochratoxin • Produced by Aspergillus ochraceus and penicillium viridicatum primarily • Produced in food and feed grains • Chiefly attacks poultry and swine • Damages kidneys and liver • Carcinogenic 8
  • 9. 5. T 2 Toxin • Is a tricothecene produced by Fusarium • Is one of the deadly known toxin • Damage all digestive tract and cause rapid death due to internal hemorrhage 9
  • 10. 6. Vomitoxin • Produced by Fusarium • Cause acute GIT illness 7. Sterigmatocystin • Produced by A. versicolor • Carcinogenic 10
  • 12. • Fungal infections are called mycoses • People are at risk of fungal infections: – taking strong antibiotics for a long period of time • because antibiotics kill not only damaging bacteria, but healthy bacteria as well • this alters the balance of microorganisms in the mouth, vagina, intestines and other places in the body • results in an overgrowth of fungus. 12
  • 13. • Individual with weakened immune systems are also at risk of developing fungal infections. – people with HIV/AIDS – people taking immunosuppressive therapy (chemotherapy) – People with diabetes • Very young and very old people, also, are groups at risk. 13
  • 14. Types of mycoses A. Superficial mycoses • Disease limited to the outer most layers of the skin and hair e.g. Malassegia furfur • Dermatomycoses 14
  • 15. B. Cutaneous mycoses • extend deeper into the epidermis, and also include invasive hair and nail diseases • The organisms that cause these diseases are called dermatophytes (Microsporum, Trichophyton, and Epidermophyton fungi), which together comprise 41 species • The resulting diseases are often called ringworm (even though there is no worm involved) or tinea. • One common disease is the athlete's foot which most commonly affects men and children before puberty. 15
  • 16. 3. Subcutaneous mycoses • Deeper layer of skin, sometimes even bone • These infections are chronic and can be initiated by piercing trauma to the skin which allows the fungi to enter. • These infections are difficult to treat and may require surgical interventions 16
  • 17. 4. Systemic mycoses • Also called deep mycoses • Affect internal organs disseminate to multiple sites of the body • Caused by dimorphic fungi such as Cryptococcus Neoformans • pathogens originate primarily in the lungs and may spread to many organ systems 17
  • 18. 18
  • 19. 5. Opportunistic mycoses • Opportunistic fungi do not cause disease under normal condition. • They cause disease under special conditions such as: – in immunologically compromised individuals such as • AIDS patients • extensive antibiotic users • mmunosuppressive drugs 19
  • 20. Examples of opportunistic mycoses A. Candidiasis • Are acute to chronic fungal infections • Involve mouth, vagina, skin, nails, bronchi (lung), alimentary tract, blood stream, UTI. • Risk factors include: – Age – Pregnancy – Diabetes – AIDS – long term antibiotic use. – Burns – Drug abuse – Gastrointestinal damage 20
  • 21. • Candida albicans – is part of normal flora of skin, vagina, mucous membrane, and GIT. – Cause: • oral trash:cause white curd like patches in the mouth • Vulvovaginitis: thick yellow white discharge, burning serration • Cutaneous candidiasis: involves nails • GIT, blood infection, bronchopulmonary infection etc. 21
  • 22. B. Cryptocococcuses • Most often cause meningitis and pulmonary infections e.g. C. neoformans C. Aspergilloses • Caused by A. fumigatus and A. flavus • Cause: – allergic bronchopulmonary diseases – Aspergillus pneumonitis – Keratitis – otomycosis (ear external infection) – Aspergillus asthma etc. 22
  • 23. D. Pneumocystis carni pneumonia • Caused by P. carinii • Is the major cause of morbidity and mortality in immune compromised people E. Zygomycosis(Mucor mycosis, phycomycosis) • Caused by Rhizopus and mucor • Growth of cotton like growths (fungal colonies) on the roof of mouth or naves in diabetic patients 23
  • 24. F. Fusarium • Some times cause diseases in HIV/AIDS patients. • It infects nails G. Penicillum • Sometimes cause keratitis, penicilliosis, otomycosis 24
  • 25. Treatment • Antifungal drugs are used to treat mycoses. • Depending on the nature of the infection, a topical or systemic agent may be used. • Photochemotherapy is a technique used at medical centers for the treatment of mycosis 25
  • 26. Prevention • Keeping the skin clean and dry, as well as maintaining good hygiene, will help larger topical mycoses. • Because fungal infections are contagious, it is important to wash after touching other people or animals. • Sports clothing should also be washed after use. 26
  • 27. Plant Diseases • Plant diseases reduce the harvest of food worldwide by about 30% each year. • 70% of plant (crop) diseases are caused by fungi • Diseases can take many forms, and cause many different types of symptoms in host plants. • Ex: necrosis (death), wilts, loss of fruit, economic damage to harvested crops 27
  • 28. Fungi as plant parasites • Necrotrophic parasites: – are parasites which kill off the host cells & feed • Biotrophic parasites: – absorb nutrients from host cells without killing the cell 28
  • 29. Seedling pathogens of fungi • Pythium spp: attack the emerging root tip • Rhizoclonia solani: attack the young shoot base • Fusarium spp: seed rot of cereals Fruit diseases • Fleshy fruits are rotten by some fungi • Botrytis cineria: cause grey mould of soft fruits such as straw berry, grapes • P. italicum cause citrus fruits to rot • P. expansum cause the rotting of apple Wood rots • Armillaria spp: it rots the wood and kill trees such as coffee 29
  • 30. Example of Plant Diseases 30
  • 31. 1.Tomato early blight (Alternaria solani) • caused by a soil-borne fungus, can over winter in plant debris on the ground. • causes dark sunken lesions on mature fruit, concentric rings of necrosis, fruit often falls from the plant before harvest. • also causes defoliation of the host plant 31
  • 32. 2. Grey Mold (Botrytis cinerea) • caused by a soil-borne fungus, easily invades new tissue on many plants. • requires high humidity, close proximity of other plants. • attacks stems first, causes black slimy lesions, which cause the plant to die. • lesions on fruit cause economic loss. Grey Mold of bean, (Botrytis cinerea) Botrytis mold on raspberries and strawberries 32
  • 33. 3. Corn Smut (Ustilago zeae) • overwinters in soil as spores, which can survive in soil for over 3 years. • causes ears of corn to turn black, with a greasy appearance. Large amounts of • spores are produced within the infected ears. • these spores can be blown on the wind to other plants. Corn smut, Ustilago zeae 33
  • 34. 4. Potato Late Blight (Phytophthora infestans) • one of the most devastating plant diseases, it is responsible for the Irish Potato Famine of the 1800’s. • caused by a fungus, it will defoliate an entire field of potatoes in a few days. • tubers are also infected, and cause the disease to be transmitted over years. Infected tuber Defoliated Plant 34
  • 35. 5. Black Spot on Rose (Diplocarpon rosae) • a fungal disease, it causes black spots to form on leaves. The spots eventually cover the entire leaf, which then falls off. All of the leaves will fall eventually. • defoliation of the plant leaves it open to drought and insect damage. • damaged plants may not live next year. Black Spot on Rose (Diplocarpon rosae) 35
  • 36. 6. Fire Blight of Apple and Peach (Erwinia amylovora) • a bacterial disease, spread by rain, as well as by insect vector. • infects through the flowers, in early spring. • causes a distinctive “shepherds crook” on infected limbs. Limbs appear burned and the entire tree will eventually die. Peach Limbs With Fire blight Apple Limbs With Fire blight 36
  • 37. Control of Plant Diseases • There are a variety of methods for the control of plant disease. A. Cultural control: the use of specific techniques or practices to eliminate or mitigate the pathogen. – disinfecting pruning equipment – removal of dead plants and plant debris – spacing of crops to allow drying – crop rotation 37
  • 38. B. Biological Control: using plants that are immune to the pathogen, or are at least tolerant. – Using biopesticides (beneficial bacteria) • which outcompete some diseases (mostly Erwinia) 38
  • 39. C. Chemical control: the use of some pesticide to kill either the pathogen or its vector. This usually has to be done over the course of a season, not just once. – Spraying fields to kill off the late blight fungus – spraying antibacterial chemicals on fire blighted trees – injecting trees with insecticide and fungicide to kill the fungus and the vector 39
  • 40. Applied area of mycology 40
  • 41. Fungal Biotechnology • Biotechnology which can simply be defined as: – application of living organisms and their components to industrial products and processes • Biotechnology also offers the potential for new industrial processes that require less energy and are based on renewable raw materials. 41
  • 42. • Biotechnology encompasses two distinct phases: Fermentation and Product recovery • Fermentation procedures must be developed for the cultivation of microorganisms under optimal conditions and for the production of desired metabolites or enzymes by the organisms. • Product recovery involves the extraction and purification of biological products 42
  • 43. • Some of the most important organisms used in biotechnology are fungi. • Only a few examples of the products and processes involving : – Food Applications – important industrial products (chemicals, pharmaceuticals) – Processes (degrade toxic wastes) 43
  • 44. Food Applications Brewing and baking – conversion of sugar into alcohol and carbon dioxide by yeasts • In bread making carbon dioxide causes the dough to rise giving lightness to the bread whilst the alcohol is driven off during baking. • Early processes were dependent on contamination by 'wild' yeasts. • Today pure strains are normally employed of baker's yeast (Saccharomyces cerevisiae) are produced worldwide every year. 44
  • 45. Cheese production – Penicillium roqueforti – Penicillium candidum – Penicillium caseicolum – Penicillium camemberti • play an important role in the development of the characteristic flavors of these cheeses. 45
  • 46. Edible mushrooms • Cultivation of edible mushrooms outdoors has been practiced for thousands of years • More consistent crops and much higher yields were obtained: – following the development of pure spawns – sterilization/pasteurization technology – a better understanding of substrate requirements and – the use of environmentally controlled mushroom houses 46
  • 47. Quorn myco-protein /SCP • A recent innovation in food technology has been the – development of Quorn myco-protein – from a filamentous fungus of Fusarium venenatum. • The filamentous nature of the biomass is responsible for the meat-like texture and appearance of the final product. • single-cell protein, or SCP, describes the protein-rich cell mass derived from microorganisms grown on a large scale for either animal or human consumption. • SCP has a high content of protein containing all the essential amino acids 47
  • 48. • Microorganisms are an excellent source of SCP because of: – their rapid growth rate – their ability to use very inexpensive raw materials as carbon sources – the uniquely high efficiency, expressed as grams of protein produced per kilo gram of raw material 48
  • 49. 49
  • 50. Useful Products • important industrial products (chemicals, pharmaceuticals etc.) – produced from fungi using fermentation technology • Early fermentations used open processes under nonsterile conditions but this changed in the 1940s – with the introduction of the stirred-tank bioreactor for penicillin manufacture • which required the development of novel engineering techniques to exclude contaminating microorganisms. 50
  • 51. • An example of a major commodity chemical manufactured by fungal fermentation is – citric acid which is widely used in the food and pharmaceutical industries. – antibiotics 51
  • 52. Other Processes • Fungi can be used in new production processes that are themselves less polluting than traditional chemical processes • some species of white rot fungi are already being employed to degrade toxic wastes/ Bioremedation 52
  • 53. • Bioremediation depends on the activities of living organisms to clean up pollutants dispersed in the environment. • Physical or chemical treatments, such as vaporization, extraction, or adsorption, relocate rather than remove pollutants. • In contrast, there are many instances in which biodegradation converts organic pollutants to harmless inorganic products, including carbon dioxide, water, and halide ions. • Other advantages are that bioremediation is generally inexpensive and causes little disturbance to the environment. 53
  • 54. • Lignin-degrading (note: decay caused by these species gives wood a bleached appearance) – such as Phanerochaete chrysosporium and Trametes versicolor • replace some of the chemical steps used in paper making. 54
  • 55. • The use of fungi as biocontrol agents to kill: – insects (mycoinsecticides) – weeds (mycoherbicides) • has the potential to replace many of the toxic chemicals currently in use. 55
  • 57. ANTIBIOTICS PRODUCED BY FUNGI A. Penicillin • First produced from P. notatum, currently produced from p. chrysogenum in cultures for high yield B. Cephalosporins • Produced from moulds called Cephalosporium • Cephalosporins breakdown bacterial cell wall 57
  • 58. C. Cycloserine • Inhibits bacterial cell wall synthesis • Produced by Trichoderma polysporum • It is immune suppressant • Not used as fungicide D. Gliotoxins • Have immunological and antibiotic activity • Produced by fungi such as A. fumigatus 58
  • 59. E. Griseofulvin • Produced by P. griseofulvin • Is fungistatic • Used for the treatment of dermatophytes applied topically • Production industrially is simple and cheap 59
  • 60. F. Statins • Produced by A. griseus a soil born fungi • It removes lipoproreins from blood vessels in humans • It acts in the liver on an enzyme which makes cholesterol and hence stop cholesterol formation • It reduces the chance of heart attack and diabetes 60
  • 61. Isolation of fungal antibiotics 61
  • 62. Isolation of fungal antibiotics • Three steps involved: 1. Culture • the fungus expected to produce antibiotic has to be cultured in the laboratory 2. Bioassay • is a biological method of detection of a substance – detects the effect of a given fungal product on living organism 62
  • 63. 3. Extraction • isolation of the active substance (the antibiotic) from the fungi • It involves: – Screening – identification of microbial products • The process of isolation and purification of antibiotics is called downstream process (product recovery) 63
  • 64. DESIRED PRODUCT IN CULTURE BROTH INTRACELLULAR PRODUCT EXTRACELLULAR PRODUCT CELL DISRUPTION (physical, chemical, enzymatic methods) BROTH WITH SOLID AND LIQUID SOLID-LIQUID SEPARATION (Flocculation, Flotation, Filtration, Centrifugation) CONCENTRATION (Evaporation, membrane filtration, precipitation, adsorption) FORMULATION (Drying, freeze drying, crystallization) FINAL PRODUCT Fig. A summary of the major steps in downstream processing 64
  • 65. • Intracellular metabolites: these products are located within the cells. – Nucleic acids – Vitamins – Enzymes – Certain antibiotics (e.g. Sisomicin and Griseofulvin) 65
  • 66. • Extracellular metabolites: they are present outside the cells (in culture fluides) – Amino acids – Citric acid – Alcohol – Some enzyme (amylase and proteases) – Most antibiotics • In a few cases, metabolites are found both in the cells and the culture filtrates; e.g. Flavomycin, Vitamin B12 66
  • 67. • Test Two – Fungal reproduction – Fungal association with other organisms – Mycotoxin • December 28/2015 67
  • 68. • Assignment one (10%) – Literature review report on • Antifugal therapy • Hallucinating mushrooms • Evaluation of each review will be based on originality of the review, relevance of the content and understanding of the topics • Group work- peer learning grouping • January 1/2016 68