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Incorporating ARGOVOC in DSpace-based
Agricultural Repositories




         Dr. Devika P. Madalli
               &
         Nabonita Guha
         Documentation Research & Training Centre
         Indian Statistical Institute, Bangalore
Overview
       Some Observation on present ontology plugin
       AGROVOC Thesaurus Plugin for DSpace
       AGROVOC in SKOS
       Difference between Thesaurus and Ontology
       Moving towards Ontology




Nov. 10, 2006     Seventh Agricultural Ontology Service (AOS) Workshop   2
Some Observations
       Present ontology plugin integrated with DSpace 1.4 doesn’t
       support synonyms and related terms
       It shows only broader and narrower relationship
       It requires the conversion of OWL or SKOS representation of
       AGROVOC into the native plugin format every time
       AGROVOC is updated
       Ideally, thesaurus input can be either in SKOS or OWL format
       (can be achieved by XLST)
       Cron job checks updates on AGROVOC site and downloads
       either SKOS or OWL file
       Alternatively, ontology should be displayed on the fly from the
       AGROVOC site (idea from Dr. Johannes Keizer)
Nov. 10, 2006         Seventh Agricultural Ontology Service (AOS) Workshop   3
AGROVOC Thesaurus Plug-in
       To provide controlled vocabulary support in subject description
       in DSpace and depict:
           Equivalence
           Homographs
           Broader/narrower/associated relationship
       To …
           Provide standard access points to document; &
           Thesaurus based Indexing & Searching




Nov. 10, 2006         Seventh Agricultural Ontology Service (AOS) Workshop   4
Handling Synonyms
       At the time of creating the metadata
                The synonymous terms are added along with the standard
                term


       At the time of search
                If the user enters a non-standard term, it will be replaced
                by standard term, and search is performed using the
                standard term




Nov. 10, 2006              Seventh Agricultural Ontology Service (AOS) Workshop   5
Handling Homographs
       Homograph resolution (spelling same but different
       meaning)
          Can be resolved using context of the given term

                At the search stage, the system will retrieve the subject
                string attached to the document along with the associated
                documents
                    Fish – agriculture
                    Fish – cooking
                    Fish – decoration


Nov. 10, 2006             Seventh Agricultural Ontology Service (AOS) Workshop   6
AGROVOC in SKOS
SKOS
       SKOS = Simple Knowledge Organization System

       Provides a model for expressing the basic structure
       and content of concept schemes [1] in RDF syntax

       Concept Scheme = thesaurus, classification
       scheme, taxonomy, subject heading list,
       terminologies, etc



Nov. 10, 2006      Seventh Agricultural Ontology Service (AOS) Workshop   8
SKOS: Classes

       Classes [2]
                ConceptScheme (AGROVOC, MeSH, AAT, etc)

                Concept (actual terms, e.g. animals, crops, etc)

                Collection (group of concepts e.g. meat cattle)




Nov. 10, 2006             Seventh Agricultural Ontology Service (AOS) Workshop   9
SKOS: Properties
       Properties [2]
                altLabel                                              isSubjectOf
                broader                                               member
                changeNote                                            definition
                narrower                                              note
                prefLabel                                             primarySubject
                scopeNote                                             related
                hasTopConcept                                         subject
                historyNote                                           example
                isPrimarySubjectOf                                    subjectIndicator


Nov. 10, 2006             Seventh Agricultural Ontology Service (AOS) Workshop           10
Thesaurus Vs Ontology
Thesaurus is …
       Controlled vocabulary tools in which relationship
       between concept terms are shown as:
                Equivalence = synonyms
                Homographic = same spelling
                Hierarchical = broader -> narrower
                Associative relationships = related terms


       Represents the terms denoting certain concepts



Nov. 10, 2006              Seventh Agricultural Ontology Service (AOS) Workshop   12
Ontology is …
       An ontology defines the terms used to describe
       and represent an area of knowledge (subject
       matter) [3]
                Model for the meaning of those terms
                Definition of the vocabulary used




Nov. 10, 2006              Seventh Agricultural Ontology Service (AOS) Workshop   13
Cattle
    COW                           BT
                                                  Suckler Cow
                                       NT

                                        NT          Dairy Cow

                                  RT
                                                  Heifers
                                   RT

(Real world entity)                RT            Cow Milk

                                             Milk yielding cows




                      Related Terms in AGROVOC for Cow
Domestic Animal




              Cattle                                 Cows
                              skos:prefLabel


         skos:Broader                      skos:Related
                            1939
                                                                  Cow milk
                                                 skos:Related


      skos:Narrower       skos:Narrower
                                                              Milk yielding cows

                                               skos:Related
Suckler Cow            Dairy Cow
                                                                       Heifers
http://www.fao.org/aos/agrovoc#c_1939

                       SKOS representation of AGROVOC Terms
Animals

                   subClassOf
   subClassOf

Domestic Animal                 Wild

           subClassOf
                                          RDF Representation of AGROVOC Terms
            Cattle


                subClassOf

                                COW

                   subClassOf
                                       subClassOf


          Heifers
                                  Milk yielding cows                        Cow milk

                                                                            Range
                                                    Domain   hasByproduct
Current Approach
       To develop a plugin which can provide thesaural
       support in DSpace

       Not only specific to AGROVOC, but can support
       any thesaurus in DSpace represented in SKOS




Nov. 10, 2006      Seventh Agricultural Ontology Service (AOS) Workshop   17
Moving Towards Ontology
       Decision regarding the nature of Information
       Retrieval
                Document retrieval ; or
                Retrieval of exact information extracted from the document

       To develop a generic framework for Agriculture
       domain knowledge with scopes for further extension
       for narrower domains

       To incorporate the inferencing mechanism defining
       certain rules (SWRL)
Nov. 10, 2006             Seventh Agricultural Ontology Service (AOS) Workshop   18
ic
                                                             ant
                                                            m
                                                          Se


                                                                     Ontology-based
                                                                     information search
                                                                     & retrieval
                                           d
                                        ure
                                     ct
                              S   tru

                                               Controlled Vocabulary
                                               in formal syntax (RDF)

               d
            ure
         ct
  s   tru
Un
                   Uncontrolled Vocabulary
References
1.     Alistair Miles & Dan Brickley. SKOS Core Guide. W3C Working
       draft 10 May 2005. http://www.w3.org/TR/swbp-skos-core-guide

2.     Alistair Miles & Dan Brickley. SKOS Core Vocabulary
       Specification. W3C Working Draft 2 November 2005.
       http://www.w3.org/TR/swbp-skos-core-spec/


3.     Dr. Leo Obrst. Presentation on the ontology spectrum & semantic
       models. MITRE, Information Semantics Group, January 12 & 19,
       2006.
       http://ontolog.cim3.net/file/resource/presentation/LeoObrst_20060112
       /OntologySpectrumSemanticModels--LeoObrst_20060112.ppt


Nov. 10, 2006          Seventh Agricultural Ontology Service (AOS) Workshop   20
Thank You


                                                     Devika P. Madalli
                                               devika@drtc.isibang.ac.in

                                                        Nabonita Guha
                                                  guha@drtc.isibang.ac.in



Nov. 10, 2006   Seventh Agricultural Ontology Service (AOS) Workshop    21

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Incorporating AGROVOC in DSpace-based Agricultural Repositories

  • 1. Incorporating ARGOVOC in DSpace-based Agricultural Repositories Dr. Devika P. Madalli & Nabonita Guha Documentation Research & Training Centre Indian Statistical Institute, Bangalore
  • 2. Overview Some Observation on present ontology plugin AGROVOC Thesaurus Plugin for DSpace AGROVOC in SKOS Difference between Thesaurus and Ontology Moving towards Ontology Nov. 10, 2006 Seventh Agricultural Ontology Service (AOS) Workshop 2
  • 3. Some Observations Present ontology plugin integrated with DSpace 1.4 doesn’t support synonyms and related terms It shows only broader and narrower relationship It requires the conversion of OWL or SKOS representation of AGROVOC into the native plugin format every time AGROVOC is updated Ideally, thesaurus input can be either in SKOS or OWL format (can be achieved by XLST) Cron job checks updates on AGROVOC site and downloads either SKOS or OWL file Alternatively, ontology should be displayed on the fly from the AGROVOC site (idea from Dr. Johannes Keizer) Nov. 10, 2006 Seventh Agricultural Ontology Service (AOS) Workshop 3
  • 4. AGROVOC Thesaurus Plug-in To provide controlled vocabulary support in subject description in DSpace and depict: Equivalence Homographs Broader/narrower/associated relationship To … Provide standard access points to document; & Thesaurus based Indexing & Searching Nov. 10, 2006 Seventh Agricultural Ontology Service (AOS) Workshop 4
  • 5. Handling Synonyms At the time of creating the metadata The synonymous terms are added along with the standard term At the time of search If the user enters a non-standard term, it will be replaced by standard term, and search is performed using the standard term Nov. 10, 2006 Seventh Agricultural Ontology Service (AOS) Workshop 5
  • 6. Handling Homographs Homograph resolution (spelling same but different meaning) Can be resolved using context of the given term At the search stage, the system will retrieve the subject string attached to the document along with the associated documents Fish – agriculture Fish – cooking Fish – decoration Nov. 10, 2006 Seventh Agricultural Ontology Service (AOS) Workshop 6
  • 8. SKOS SKOS = Simple Knowledge Organization System Provides a model for expressing the basic structure and content of concept schemes [1] in RDF syntax Concept Scheme = thesaurus, classification scheme, taxonomy, subject heading list, terminologies, etc Nov. 10, 2006 Seventh Agricultural Ontology Service (AOS) Workshop 8
  • 9. SKOS: Classes Classes [2] ConceptScheme (AGROVOC, MeSH, AAT, etc) Concept (actual terms, e.g. animals, crops, etc) Collection (group of concepts e.g. meat cattle) Nov. 10, 2006 Seventh Agricultural Ontology Service (AOS) Workshop 9
  • 10. SKOS: Properties Properties [2] altLabel isSubjectOf broader member changeNote definition narrower note prefLabel primarySubject scopeNote related hasTopConcept subject historyNote example isPrimarySubjectOf subjectIndicator Nov. 10, 2006 Seventh Agricultural Ontology Service (AOS) Workshop 10
  • 12. Thesaurus is … Controlled vocabulary tools in which relationship between concept terms are shown as: Equivalence = synonyms Homographic = same spelling Hierarchical = broader -> narrower Associative relationships = related terms Represents the terms denoting certain concepts Nov. 10, 2006 Seventh Agricultural Ontology Service (AOS) Workshop 12
  • 13. Ontology is … An ontology defines the terms used to describe and represent an area of knowledge (subject matter) [3] Model for the meaning of those terms Definition of the vocabulary used Nov. 10, 2006 Seventh Agricultural Ontology Service (AOS) Workshop 13
  • 14. Cattle COW BT Suckler Cow NT NT Dairy Cow RT Heifers RT (Real world entity) RT Cow Milk Milk yielding cows Related Terms in AGROVOC for Cow
  • 15. Domestic Animal Cattle Cows skos:prefLabel skos:Broader skos:Related 1939 Cow milk skos:Related skos:Narrower skos:Narrower Milk yielding cows skos:Related Suckler Cow Dairy Cow Heifers http://www.fao.org/aos/agrovoc#c_1939 SKOS representation of AGROVOC Terms
  • 16. Animals subClassOf subClassOf Domestic Animal Wild subClassOf RDF Representation of AGROVOC Terms Cattle subClassOf COW subClassOf subClassOf Heifers Milk yielding cows Cow milk Range Domain hasByproduct
  • 17. Current Approach To develop a plugin which can provide thesaural support in DSpace Not only specific to AGROVOC, but can support any thesaurus in DSpace represented in SKOS Nov. 10, 2006 Seventh Agricultural Ontology Service (AOS) Workshop 17
  • 18. Moving Towards Ontology Decision regarding the nature of Information Retrieval Document retrieval ; or Retrieval of exact information extracted from the document To develop a generic framework for Agriculture domain knowledge with scopes for further extension for narrower domains To incorporate the inferencing mechanism defining certain rules (SWRL) Nov. 10, 2006 Seventh Agricultural Ontology Service (AOS) Workshop 18
  • 19. ic ant m Se Ontology-based information search & retrieval d ure ct S tru Controlled Vocabulary in formal syntax (RDF) d ure ct s tru Un Uncontrolled Vocabulary
  • 20. References 1. Alistair Miles & Dan Brickley. SKOS Core Guide. W3C Working draft 10 May 2005. http://www.w3.org/TR/swbp-skos-core-guide 2. Alistair Miles & Dan Brickley. SKOS Core Vocabulary Specification. W3C Working Draft 2 November 2005. http://www.w3.org/TR/swbp-skos-core-spec/ 3. Dr. Leo Obrst. Presentation on the ontology spectrum & semantic models. MITRE, Information Semantics Group, January 12 & 19, 2006. http://ontolog.cim3.net/file/resource/presentation/LeoObrst_20060112 /OntologySpectrumSemanticModels--LeoObrst_20060112.ppt Nov. 10, 2006 Seventh Agricultural Ontology Service (AOS) Workshop 20
  • 21. Thank You Devika P. Madalli devika@drtc.isibang.ac.in Nabonita Guha guha@drtc.isibang.ac.in Nov. 10, 2006 Seventh Agricultural Ontology Service (AOS) Workshop 21