1.
Semantics for Biodiversity, May 16th – 18th 2012. Kansas University, Lawrence, KS. Dag Endresen, GBIF

2.
genesys-pgr.orgThe GENESYS gateway to genetic resources provides access to information on morethan 2.3 million genebank accessions, http://www.genesys-pgr.org/

3.
Potential of the GBIF technologyhttp://data.gbif.org/datasets/network/2 3

4.
Multiple data export services European Crop Databases European Genebank EURISCO dataset Catalog Global Crop GBIF Registries 4

5.
2005 : BioCASE demoGenebank/germplasm extension to the ABCD 2.06 5

6.
2010 : IPT installations for EURISCO  EURISCO  NordGen (Nordic)  Bioversity-Montpellier (France)  IPK Gatersleben (Germany)  BLE (Germany)  WUR CGN (The Netherlands)  CRI (Czech Republic)  VIR (Russian Federation)  SeedNET (Balkan)  Baltic (Estonia, Latvia, Lithuania) 6

7.
Darwin CoreThe purpose of DwC terms is to facilitate data sharing• a well-defined standard core vocabulary• a flexible framework to maximize re-usability• approved as TDWG standard 2009“The Darwin Core is primarily based on taxa, their occurrence in natureas documented by observations, specimens, and samples, and relatedinformation.”http://rs.tdwg.org/dwc/The Darwin Core can be extended by new terms toshare additional information.Wieczorek J, Bloom D, Guralnick R, Blum S, Döring M, Giovanni R,Robertson T, Vieglais D (2012). Darwin Core: An Evolving Community-Developed Biodiversity Data Standard. PLoS ONE 7(1): e29715.doi:10.1371/journal.pone.0029715 7

8.
Darwin Core extension for genebanksDwC Germplasm : DRAFT 0.1 : August 26, 2009• “MCPD in Darwin Core”• Additional terms to describe germplasm samples• Includes terms from the breeding/cultivation event• Includes additional terms for crop trait experiments• Includes terms for international crop treaty regulationshttp://code.google.com/p/darwincore-germplasmhttp://rs.nordgen.org/dwc/ (draft version)http://purl.org/germplasm/terms# (coming soon) 8

9.
Alercia, A., S. Diulgheroff, T. Metz(2001). FAO/IPGRI Multi-croppassport descriptors, December2001. International Plant GeneticResources Institute (IPGRI) / Foodand Agriculture Organization of theUnited Nations (FAO), Rome, Italy.Available athttp://apps3.fao.org/wiews/mcpd/MCPD_Dec2001_EN.pdf 9

10.
DwC Germplasm (1)

11.
DwC Germplasm (2)

12.
DwC Germplasm (3)

13.
DwC Germplasm (4)

14.
DwC Germplasm (5)

15.
Germplasm vocabulary of terms (RDF/SKOS)…… http://rs.gbif.org/sandbox/terms/germplasm/germplasm_01.rdf http://purl.org/germplasm/ (in preparation) http://kos.gbif.org/wiki/Germplasm (wiki forum) 15

16.
Darwin Core Archive (DwC-A) DwC-A publish dwc records including extensions Simple text based format Zipped single file archive Germplasm.txt

17.
Darwin Core Archive extension (XML) … http://rs.gbif.org/extension/nordgen/0.1/germplasm.xml 17

18.
GBIF Vocabulary Serverhttp://vocabularies.gbif.org/node/163947 18

19.
1. Mint and maintain concepts and terms, in domain-expert working groups. 2. Release final version as a RDF Vocabulary. 3. REUSE terms from published RDF vocabularies Wiki and ontologies when designing new DwC-A Vocabulary extensions, controlled value vocabularies Management (and new Ontologies). 4 1 4. Publish at the GBIF Resources Repository. 5. Browse at the GBIF Resources Browser. Resources Repository RDF 2 Vocabulary ISOcat GBIF 5 Vocabulary of Concepts Resources Management (rdf, skos) Browser 1 proposed spreadsheet processor Darwin Core Archive extensions & Excel controlled GBIF Vocabularies 3 vocabularies as a collaborative Template for management tool for Vocabularies Darwin Core Archive 1 GBIF Vocabularies extensions and controlled vocabularies.Collaborative management tools

20.
Evaluation of various tools for collaborativemanagement of RDF vocabularies. GBIF Resources Repository Wiki Vocabulary Management Resources RDF Repository Vocabulary DwC-A ISOcat of Concepts Extensions & GBIF IPT Controlled Vocabulary Management (rdf, skos) vocabularies ? proposed Scratchpads spreadsheet processor MS Excel Template for Vocabularies Wiki Forum Wiki forum for terms as for Terms an open community platform for description of new and (reused) existing terms.

21.
http://community.gbif.org/pg/groups/21382/